Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008142.1

Orthogroup ID

OG0010733

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2314

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008142.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1489 bp

acatgcttattggcagggagtaatctctgaatttagtattccacaagctgagagtccagataaggaggagttccgatttgaatggctctacgccaatgggttgctcgcagttattttctgttttggtttgcttttgactgcccttaagagcagaaaagcaagatcatggtggtatggcacaggctggctgagaagctttaccgccgactatggggttccccttatggtcttaacatggacagcaatgtcttatgctttacccagtgaagttccacatgcagttcctaggcggctcgtctgtccatttccatgggacaaagaatcactgtaccactggacagtcataatggacatgggcaaggtcccaatagtttacatctttgctgcctttataccagccattatgatagcaggtctatactttttcgaccacagtgtagcttcacagctggcacaacagaaggagtttaatcttcaaaaaccatctgcataccattatgatttgttactgctgggaataatgacattgatttgtgggttgcttggacttccgccatcaaatggggtccttccacagtcccccatgcacactaagagtcttgctacactaaggaggcaggtgatccgaaagaagatggtgaagagtgccaaggattgcatgaaagaaaatgcaagcaactctgagatttatggaaggatggaggctgtgtttatagaaatggaaggcggttctcctccaaatcccaaggagttggcaaacttgaaggaggctgtgatgaaagctgatgatgggggagatttgaagggaaaatttgatcctgagaaacacattgatgctcatttgcctgttcgggtcaatgagcaaagagtgagcaacctcttgcagtcgcttcttgtgggagtctcaatattgggaatagccgcaatcaaaatgatacctacctcagttttgtggggatactttgcctatatggcaattgatagtctcccaggtagtcagttctttgagaggattttgctgctcttcatcagccctagtcgccgttacaaggtcttggaaggttctcatgcttcattcgtggagttagtaccatacaagtacattgttgggttcacgctcttccaagtggtttactttttgatgtgtttcggggtgacatggatacctatagccggaatattgttcccattgccattcttccttcttatcagcataaggcaacatgtgctacccaggttctttcaccctgcccatcttcaagaacttgattcttgtgagtgggaagaatgtcctggtgctccacaagaaaaaccacatgaagctggcggtgacgaggagggtacagaatcgttctttgatgctgagatattggatgagatgacaaccagcagaggcgagttgaagcttaggaccagcttcagtagtactgaagacaggtgcatcccgacgatgctccccgaatatgacaagacagtggattctgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006873 GO:0006885 GO:0007154 GO:0008150 GO:0008509 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015238 GO:0015318 GO:0015562 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0051716 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071496 GO:0071944 GO:0080029 GO:0080139 GO:0098656 GO:0098660 GO:0098661 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

495

Amino Acids

55.99

Weight (kDa)

5.77

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32510 AT4G32510 AT5G25430
fragaria_vesca	FvH4_2g29710
malus_domestica	MD15G1119200.v1.1
prunus_persica	Prupe.1G472500_v2.0.a1 Prupe.1G472500_v2.0.a1
pyrus_communis	pycom15g10750
rosa_chinensis	RchiOBHm_Chr6g0298721
rosa_laevigata	RLG00000011491
rosa_multiflora	Rmu_sc0008099.1_g000001 Rmu_sc0008142.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169390
rosa_rugosa	Rorug06G0282800 Rorug06G0282800
rosa_samantha	Rh6AG393900 Rh6BG401700 Rh6CG407600 Rh6DG394200
rosa_wichuraiana	Rw6G034440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	608
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	2 cut(s)	402, 608
AccB7I	CCANNNNNTGG	1 cut(s)	561
AciI	CCGC	6 cut(s)	202, 290, 552, 727, 922, 1327
AclWI	GGATC	2 cut(s)	617, 810
AcsI	RAATTY	2 cut(s)	30, 810
AcuI	CTGAAG	2 cut(s)	1403, 1450
AfaI	GTAC	5 cut(s)	330, 1090, 1101, 1343, 1427
AfiI	CCNNNNNNNGG	4 cut(s)	211, 561, 1049, 1173
AflII	CTTAAG	1 cut(s)	144
AflIII	ACRYGT	1 cut(s)	1223
AgsI	TTSAA	6 cut(s)	81, 477, 764, 803, 1260, 1403
AjnI	CCWGG	3 cut(s)	989, 1233, 1292
AluBI	AGCT	8 cut(s)	48, 196, 441, 449, 783, 1323, 1406, 1417
AluI	AGCT	8 cut(s)	48, 196, 441, 449, 783, 1323, 1406, 1417
Alw21I	GWGCWC	1 cut(s)	1301
Alw26I	GTCTC	2 cut(s)	908, 990
AlwI	GGATC	2 cut(s)	617, 810
ApeKI	GCWGC	2 cut(s)	384, 1019
ApoI	RAATTY	2 cut(s)	30, 810
AspA2I	CCTAGG	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	362, 566, 1411
AsuHPI	GGTGA	5 cut(s)	632, 650, 1166, 1236, 1341
AvaII	GGWCC	3 cut(s)	362, 566, 1411
AvrII	CCTAGG	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	1438
Bbv12I	GWGCWC	1 cut(s)	1301
BbvI	GCAGC	2 cut(s)	371, 1006
BccI	CCATC	6 cut(s)	491, 563, 629, 692, 783, 1261
BceAI	ACGGC	1 cut(s)	1027
BciT130I	CCWGG	3 cut(s)	991, 1235, 1294
BciVI	GTATCC	2 cut(s)	951, 1156
BcoDI	GTCTC	2 cut(s)	908, 990
BfaI	CTAG	2 cut(s)	286, 1036
BfmI	CTRYAG	1 cut(s)	1168
BfrI	CTTAAG	1 cut(s)	144
BfuAI	ACCTGC	2 cut(s)	402, 608
BfuI	GTATCC	2 cut(s)	951, 1156
BglI	GCCNNNNNGGC	1 cut(s)	972
BisI	GCNGC	4 cut(s)	291, 385, 922, 1020
BlnI	CCTAGG	1 cut(s)	285
BlsI	GCNGC	4 cut(s)	292, 386, 923, 1021
BmcAI	AGTACT	1 cut(s)	1427
Bme1390I	CCNGG	3 cut(s)	991, 1235, 1294
Bme18I	GGWCC	3 cut(s)	362, 566, 1411
BmgT120I	GGNCC	3 cut(s)	362, 566, 1411
BmiI	GGNNCC	3 cut(s)	217, 364, 567
BmrFI	CCNGG	3 cut(s)	991, 1235, 1294
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	4 cut(s)	824, 1349, 1441, 1450
BmuI	ACTGGG	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	1438
Bpu10I	CCTNAGC	1 cut(s)	1407
BsaJI	CCNNGG	6 cut(s)	285, 309, 649, 745, 989, 1233
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 561, 1049, 1173
Bse1I	ACTGG	2 cut(s)	262, 339
Bse3DI	GCAATG	2 cut(s)	250, 1188
BseBI	CCWGG	3 cut(s)	991, 1235, 1294
BseDI	CCNNGG	6 cut(s)	285, 309, 649, 745, 989, 1233
BseGI	GGATG	3 cut(s)	703, 1379, 1441
BseLI	CCNNNNNNNGG	4 cut(s)	211, 561, 1049, 1173
BseMI	GCAATG	2 cut(s)	250, 1188
BseMII	CTCAG	6 cut(s)	40, 180, 673, 811, 958, 1354
BseNI	ACTGG	2 cut(s)	262, 339
BseRI	GAGGAG	3 cut(s)	81, 724, 1350
BseXI	GCAGC	2 cut(s)	371, 1006
BseYI	CCCAGC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	1301
BsiSI	CCGG	1 cut(s)	1174
BslFI	GGGAC	3 cut(s)	327, 348, 563
BslI	CCNNNNNNNGG	4 cut(s)	211, 561, 1049, 1173
BsmAI	GTCTC	2 cut(s)	908, 990
BsmFI	GGGAC	3 cut(s)	327, 348, 563
Bsp1286I	GDGCHC	1 cut(s)	1301
Bsp143I	GATC	3 cut(s)	162, 622, 815
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	6 cut(s)	202, 290, 552, 727, 922, 1327
BspCNI	CTCAG	6 cut(s)	41, 181, 674, 812, 957, 1355
BspLI	GGNNCC	3 cut(s)	217, 364, 567
BspMI	ACCTGC	2 cut(s)	402, 608
BspPI	GGATC	2 cut(s)	617, 810
BspQI	GCTCTTC	2 cut(s)	1029, 1125
BspTI	CTTAAG	1 cut(s)	144
BsrDI	GCAATG	2 cut(s)	250, 1188
BsrI	ACTGG	2 cut(s)	262, 339
BssECI	CCNNGG	6 cut(s)	285, 309, 649, 745, 989, 1233
BssMI	GATC	3 cut(s)	162, 622, 815
BssT1I	CCWWGG	4 cut(s)	285, 309, 649, 745
Bst2UI	CCWGG	3 cut(s)	991, 1235, 1294
Bst4CI	ACNGT	5 cut(s)	328, 341, 435, 577, 1475
Bst6I	CTCTTC	3 cut(s)	636, 1029, 1125
BstAFI	CTTAAG	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	1226
BstC8I	GCNNGC	5 cut(s)	106, 186, 451, 674, 1325
BstDEI	CTNAG	9 cut(s)	49, 189, 592, 609, 682, 820, 944, 1363, 1407
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	703, 1379, 1441
BstKTI	GATC	3 cut(s)	165, 625, 818
BstMAI	GTCTC	2 cut(s)	908, 990
BstMBI	GATC	3 cut(s)	162, 622, 815
BstMWI	GCNNNNNNNGC	3 cut(s)	972, 1039, 1226
BstNI	CCWGG	3 cut(s)	991, 1235, 1294
BstNSI	RCATGY	3 cut(s)	6, 279, 1227
BstSCI	CCNGG	3 cut(s)	989, 1233, 1292
BstSFI	CTRYAG	1 cut(s)	1168
BstV1I	GCAGC	2 cut(s)	371, 1006
BstV2I	GAAGAC	1 cut(s)	1438
BstXI	CCANNNNNNTGG	2 cut(s)	310, 752
BsuI	GTATCC	2 cut(s)	951, 1156
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	703, 1379, 1441
BtsIMutI	CAGTG	5 cut(s)	269, 324, 332, 440, 1480
BveI	ACCTGC	2 cut(s)	402, 608
Cac8I	GCNNGC	5 cut(s)	106, 186, 451, 674, 1325
Cfr13I	GGNCC	3 cut(s)	362, 566, 1411
Csp6I	GTAC	5 cut(s)	329, 1089, 1100, 1342, 1426
CviQI	GTAC	5 cut(s)	329, 1089, 1100, 1342, 1426
DdeI	CTNAG	9 cut(s)	49, 189, 592, 609, 682, 820, 944, 1363, 1407
DpnI	GATC	3 cut(s)	164, 624, 817
DpnII	GATC	3 cut(s)	162, 622, 815
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	3 cut(s)	636, 1029, 1125
EarI	CTCTTC	3 cut(s)	636, 1029, 1125
EciI	GGCGGA	1 cut(s)	541
Eco130I	CCWWGG	4 cut(s)	285, 309, 649, 745
Eco47I	GGWCC	3 cut(s)	362, 566, 1411
Eco57I	CTGAAG	2 cut(s)	1403, 1450
EcoO109I	RGGNCCY	2 cut(s)	362, 566
EcoRII	CCWGG	3 cut(s)	989, 1233, 1292
EcoT14I	CCWWGG	4 cut(s)	285, 309, 649, 745
ErhI	CCWWGG	4 cut(s)	285, 309, 649, 745
FaqI	GGGAC	3 cut(s)	327, 348, 563
Fnu4HI	GCNGC	4 cut(s)	291, 385, 922, 1020
FokI	GGATG	3 cut(s)	710, 1386, 1428
Fsp4HI	GCNGC	4 cut(s)	291, 385, 922, 1020
FspBI	CTAG	2 cut(s)	286, 1036
GluI	GCNGC	4 cut(s)	291, 385, 922, 1020
GsaI	CCCAGC	1 cut(s)	516
HapII	CCGG	1 cut(s)	1174
HindIII	AAGCTT	2 cut(s)	194, 1404
HinfI	GANTC	7 cut(s)	53, 321, 596, 901, 1269, 1347, 1479
HpaII	CCGG	1 cut(s)	1174
HphI	GGTGA	5 cut(s)	632, 650, 1166, 1236, 1341
Hpy166II	GTNNAC	3 cut(s)	374, 1114, 1133
Hpy188I	TCNGA	5 cut(s)	29, 75, 627, 683, 1484
Hpy188III	TCNNGA	4 cut(s)	57, 819, 1260, 1445
Hpy8I	GTNNAC	3 cut(s)	374, 1114, 1133
Hpy99I	CGWCG	1 cut(s)	1451
HpyAV	CCTTC	8 cut(s)	455, 579, 688, 717, 758, 797, 1053, 1212
HpyCH4III	ACNGT	5 cut(s)	328, 341, 435, 577, 1475
HpyCH4V	TGCA	7 cut(s)	279, 489, 587, 658, 672, 884, 1441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	972, 1039, 1226
HpyF3I	CTNAG	9 cut(s)	49, 189, 592, 609, 682, 820, 944, 1363, 1407
Kzo9I	GATC	3 cut(s)	162, 622, 815
LguI	GCTCTTC	2 cut(s)	1029, 1125
LmnI	GCTCC	2 cut(s)	1304, 1459
Lsp1109I	GCAGC	2 cut(s)	371, 1006
LweI	GCATC	4 cut(s)	824, 1349, 1441, 1450
MaeI	CTAG	2 cut(s)	286, 1036
MaeIII	GTNAC	4 cut(s)	505, 1044, 1154, 1329
MalI	GATC	3 cut(s)	164, 624, 817
MboI	GATC	3 cut(s)	162, 622, 815
MboII	GAAGA	9 cut(s)	465, 644, 653, 1016, 1112, 1190, 1248, 1296, 1443
MfeI	CAATTG	1 cut(s)	976
MhlI	GDGCHC	1 cut(s)	1301
MluCI	AATT	3 cut(s)	30, 810, 976
MlyI	GAGTC	3 cut(s)	62, 605, 910
MseI	TTAA	3 cut(s)	145, 231, 469
MslI	CAYNNNNRTG	2 cut(s)	308, 832
MspA1I	CMGCKG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	144
MspI	CCGG	1 cut(s)	1174
MspR9I	CCNGG	3 cut(s)	991, 1235, 1294
MunI	CAATTG	1 cut(s)	976
MvaI	CCWGG	3 cut(s)	991, 1235, 1294
MwoI	GCNNNNNNNGC	3 cut(s)	972, 1039, 1226
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	3 cut(s)	162, 622, 815
NlaIV	GGNNCC	3 cut(s)	217, 364, 567
NmuCI	GTSAC	2 cut(s)	1154, 1329
NspI	RCATGY	3 cut(s)	6, 279, 1227
PaqCI	CACCTGC	1 cut(s)	608
PciI	ACATGT	1 cut(s)	1223
PciSI	GCTCTTC	2 cut(s)	1029, 1125
PfeI	GAWTC	4 cut(s)	321, 1269, 1347, 1479
PflMI	CCANNNNNTGG	1 cut(s)	561
PkrI	GCNGC	4 cut(s)	292, 386, 923, 1021
PleI	GAGTC	3 cut(s)	61, 604, 909
PpsI	GAGTC	3 cut(s)	61, 604, 909
PpuMI	RGGWCCY	2 cut(s)	362, 566
PscI	ACATGT	1 cut(s)	1223
Psp5II	RGGWCCY	2 cut(s)	362, 566
Psp6I	CCWGG	3 cut(s)	989, 1233, 1292
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	3 cut(s)	989, 1233, 1292
PspN4I	GGNNCC	3 cut(s)	217, 364, 567
PspPI	GGNCC	3 cut(s)	362, 566, 1411
PspPPI	RGGWCCY	2 cut(s)	362, 566
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	5 cut(s)	330, 1090, 1101, 1343, 1427
RsaNI	GTAC	5 cut(s)	329, 1089, 1100, 1342, 1426
RseI	CAYNNNNRTG	2 cut(s)	308, 832
SapI	GCTCTTC	2 cut(s)	1029, 1125
SaqAI	TTAA	3 cut(s)	145, 231, 469
SatI	GCNGC	4 cut(s)	291, 385, 922, 1020
Sau3AI	GATC	3 cut(s)	162, 622, 815
Sau96I	GGNCC	3 cut(s)	362, 566, 1411
ScaI	AGTACT	1 cut(s)	1427
SchI	GAGTC	3 cut(s)	62, 605, 910
ScrFI	CCNGG	3 cut(s)	991, 1235, 1294
SduI	GDGCHC	1 cut(s)	1301
SfaNI	GCATC	4 cut(s)	824, 1349, 1441, 1450
SfcI	CTRYAG	1 cut(s)	1168
SinI	GGWCC	3 cut(s)	362, 566, 1411
SmiMI	CAYNNNNRTG	2 cut(s)	308, 832
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
Sse9I	AATT	3 cut(s)	30, 810, 976
SsiI	CCGC	6 cut(s)	202, 290, 552, 727, 922, 1327
SspI	AATATT	2 cut(s)	910, 1180
SspMI	CTAG	2 cut(s)	286, 1036
StyD4I	CCNGG	3 cut(s)	989, 1233, 1292
StyI	CCWWGG	4 cut(s)	285, 309, 649, 745
TaaI	ACNGT	5 cut(s)	328, 341, 435, 577, 1475
TaqI	TCGA	1 cut(s)	427
TasI	AATT	3 cut(s)	30, 810, 976
TatI	WGTACW	2 cut(s)	1099, 1425
TauI	GCSGC	2 cut(s)	293, 924
TfiI	GAWTC	4 cut(s)	321, 1269, 1347, 1479
Tru1I	TTAA	3 cut(s)	145, 231, 469
Tru9I	TTAA	3 cut(s)	145, 231, 469
TscAI	CASTG	5 cut(s)	269, 331, 339, 440, 1480
TseFI	GTSAC	2 cut(s)	1154, 1329
TseI	GCWGC	2 cut(s)	384, 1019
Tsp45I	GTSAC	2 cut(s)	1154, 1329
TspDTI	ATGAA	5 cut(s)	675, 792, 1016, 1063, 1333
TspRI	CASTG	5 cut(s)	269, 331, 339, 440, 1480
Van91I	CCANNNNNTGG	1 cut(s)	561
Vha464I	CTTAAG	1 cut(s)	144
VpaK11BI	GGWCC	3 cut(s)	362, 566, 1411
XapI	RAATTY	2 cut(s)	30, 810
XceI	RCATGY	3 cut(s)	6, 279, 1227
XmaJI	CCTAGG	1 cut(s)	285
XspI	CTAG	2 cut(s)	286, 1036
ZrmI	AGTACT	1 cut(s)	1427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.