Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008355.1

Orthogroup ID

OG0021669

Physical Location & Seq

Genomic Coordinates Forward (+)

23234 .. 23623

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008355.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggccaaggcagtcacttacagcgtgaccaccttaggagccaaaccagatggcaagaccgactcaactaaggccttcctttctgcatgggctaaagcttgtgcctcggtgcaacccgcggtgatttacgtgccggcagggaggttcttgctccgcaatgccttgttcagcggaccatgcaagaacagccgcatcaccttccgaatcgccggcacccttgttgctccgtccgattatcgggtcatcggaaatgccggtaactggcttctctttctgcacgtcaacggagtcaccatttccggaggaattcttgacggtcaaggcactggtttgtgggcttgcaagaactccggcaagagttgccccacgggagccacggtaagcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

129

Amino Acids

13.37

Weight (kDa)

9.84

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021669)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004926.1_g000014 Rmu_sc0008355.1_g000009
rosa_roxburghii	Rroxscaffold_2G00128690
rosa_samantha	Rh2CG262900 Rh2DG265400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccII	CGCG	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	5 cut(s)	117, 119, 154, 171, 190
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	237, 261
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	2 cut(s)	3, 72
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	133, 187, 283
AvaII	GGWCC	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	212
BccI	CCATC	1 cut(s)	44
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	173
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	3 cut(s)	40, 214, 373
BmsI	GCATC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	130
BsaJI	CCNNGG	5 cut(s)	6, 105, 117, 366, 375
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 261
Bse118I	RCCGGY	3 cut(s)	133, 209, 254
Bse1I	ACTGG	2 cut(s)	266, 331
Bse21I	CCTNAGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	163
BseAI	TCCGGA	1 cut(s)	299
BseDI	CCNNGG	5 cut(s)	6, 105, 117, 366, 375
BseLI	CCNNNNNNNGG	2 cut(s)	237, 261
BseMI	GCAATG	1 cut(s)	163
BseNI	ACTGG	2 cut(s)	266, 331
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	5, 74
BshNI	GGYRCC	1 cut(s)	212
BsiSI	CCGG	5 cut(s)	134, 210, 255, 300, 351
BslI	CCNNNNNNNGG	2 cut(s)	237, 261
BsnI	GGCC	2 cut(s)	5, 74
Bsp13I	TCCGGA	1 cut(s)	299
BspACI	CCGC	5 cut(s)	117, 119, 154, 171, 190
BspANI	GGCC	2 cut(s)	5, 74
BspEI	TCCGGA	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	3 cut(s)	40, 214, 373
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	163
BsrFI	RCCGGY	3 cut(s)	133, 209, 254
BsrI	ACTGG	2 cut(s)	266, 331
BssAI	RCCGGY	3 cut(s)	133, 209, 254
BssECI	CCNNGG	5 cut(s)	6, 105, 117, 366, 375
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	317, 379
BstAPI	GCANNNNNTGC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	135, 211, 340
BstDEI	CTNAG	2 cut(s)	34, 69
BstDSI	CCRYGG	3 cut(s)	117, 366, 375
BstFNI	CGCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 186, 360
BstUI	CGCG	1 cut(s)	119
Bsu36I	CCTNAGG	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	5, 74
BtgI	CCRYGG	3 cut(s)	117, 366, 375
BtrI	CACGTC	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	3 cut(s)	135, 211, 340
Cfr10I	RCCGGY	3 cut(s)	133, 209, 254
Cfr13I	GGNCC	1 cut(s)	173
Cfr42I	CCGCGG	1 cut(s)	120
CviAII	CATG	2 cut(s)	87, 177
CviJI	RGCY	9 cut(s)	5, 41, 74, 92, 98, 189, 265, 338, 374
CviKI_1	RGCY	9 cut(s)	5, 41, 74, 92, 98, 189, 265, 338, 374
DdeI	CTNAG	2 cut(s)	34, 69
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	173
Eco81I	CCTNAGG	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	90, 180
FaiI	YATR	2 cut(s)	88, 178
FatI	CATG	2 cut(s)	86, 176
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	5, 74
HapII	CCGG	5 cut(s)	134, 210, 255, 300, 351
Hin1II	CATG	2 cut(s)	90, 180
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	3 cut(s)	62, 204, 288
HpaII	CCGG	5 cut(s)	134, 210, 255, 300, 351
HphI	GGTGA	3 cut(s)	133, 187, 283
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	203, 232, 248
Hpy188III	TCNNGA	2 cut(s)	300, 311
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	85, 208
HpyCH4III	ACNGT	2 cut(s)	317, 379
HpyCH4IV	ACGT	2 cut(s)	129, 279
HpyCH4V	TGCA	5 cut(s)	86, 112, 180, 277, 342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 186, 360
HpyF3I	CTNAG	2 cut(s)	34, 69
HpySE526I	ACGT	2 cut(s)	129, 279
Hsp92II	CATG	2 cut(s)	90, 180
Kpn2I	TCCGGA	1 cut(s)	299
KroI	GCCGGC	2 cut(s)	133, 209
KroNI	GCCGGC	2 cut(s)	135, 211
KspI	CCGCGG	1 cut(s)	120
LmnI	GCTCC	4 cut(s)	38, 156, 229, 371
LpnPI	CCDG	9 cut(s)	60, 123, 147, 223, 247, 268, 312, 313, 364
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	2 cut(s)	129, 279
MaeIII	GTNAC	4 cut(s)	13, 25, 257, 289
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	306, 385
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	56, 297
MnlI	CCTC	3 cut(s)	115, 135, 296
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	299
MroNI	GCCGGC	2 cut(s)	133, 209
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	388
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	119, 171
MspI	CCGG	5 cut(s)	134, 210, 255, 300, 351
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	177, 186, 360
NaeI	GCCGGC	2 cut(s)	135, 211
NgoMIV	GCCGGC	2 cut(s)	133, 209
NlaIII	CATG	2 cut(s)	90, 180
NlaIV	GGNNCC	3 cut(s)	40, 214, 373
NmuCI	GTSAC	3 cut(s)	13, 25, 289
PceI	AGGCCT	1 cut(s)	74
PdiI	GCCGGC	2 cut(s)	135, 211
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	2 cut(s)	56, 296
PpsI	GAGTC	2 cut(s)	56, 296
Ppu21I	YACGTR	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	40, 214, 373
PspPI	GGNCC	1 cut(s)	173
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	56, 297
SetI	ASST	6 cut(s)	35, 100, 132, 146, 200, 282
SfaNI	GCATC	1 cut(s)	201
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	173
Sse9I	AATT	2 cut(s)	306, 385
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	5 cut(s)	117, 119, 154, 171, 190
StuI	AGGCCT	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	317, 379
TaiI	ACGT	2 cut(s)	132, 282
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	306, 385
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	3 cut(s)	13, 25, 289
Tsp45I	GTSAC	3 cut(s)	13, 25, 289
TspGWI	ACGGA	2 cut(s)	216, 300
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.