Polygalacturonase-like
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0004926.1_g000014 Rmu_sc0008355.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00128690 |
| rosa_samantha | Rh2CG262900 Rh2DG265400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 148 |
| AciI | CCGC | 1 cut(s) | 132 |
| AcuI | CTGAAG | 1 cut(s) | 18 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 285 |
| AgsI | TTSAA | 1 cut(s) | 227 |
| AluBI | AGCT | 1 cut(s) | 122 |
| AluI | AGCT | 1 cut(s) | 122 |
| Alw26I | GTCTC | 2 cut(s) | 133, 250 |
| AoxI | GGCC | 2 cut(s) | 114, 197 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 111, 129, 143, 161 |
| AspLEI | GCGC | 3 cut(s) | 26, 215, 420 |
| AspS9I | GGNCC | 2 cut(s) | 114, 197 |
| AsuC2I | CCSGG | 1 cut(s) | 158 |
| AxyI | CCTNAGG | 1 cut(s) | 19 |
| BccI | CCATC | 4 cut(s) | 68, 224, 259, 326 |
| BcnI | CCSGG | 1 cut(s) | 158 |
| BcoDI | GTCTC | 2 cut(s) | 133, 250 |
| BfoI | RGCGCY | 1 cut(s) | 216 |
| BfuAI | ACCTGC | 1 cut(s) | 148 |
| Bme1390I | CCNGG | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 2 cut(s) | 114, 197 |
| BmrFI | CCNGG | 1 cut(s) | 158 |
| BmrI | ACTGGG | 1 cut(s) | 271 |
| BmuI | ACTGGG | 1 cut(s) | 271 |
| BpuMI | CCSGG | 1 cut(s) | 158 |
| BsaWI | WCCGGW | 1 cut(s) | 323 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 387, 417 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 285 |
| Bse118I | RCCGGY | 2 cut(s) | 233, 278 |
| Bse1I | ACTGG | 3 cut(s) | 266, 290, 355 |
| Bse21I | CCTNAGG | 1 cut(s) | 19 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 285 |
| BseNI | ACTGG | 3 cut(s) | 266, 290, 355 |
| BshFI | GGCC | 2 cut(s) | 116, 199 |
| BsiSI | CCGG | 5 cut(s) | 158, 234, 279, 324, 375 |
| BslFI | GGGAC | 2 cut(s) | 140, 374 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 285 |
| BsmAI | GTCTC | 2 cut(s) | 133, 250 |
| BsmBI | CGTCTC | 1 cut(s) | 250 |
| BsmFI | GGGAC | 2 cut(s) | 140, 374 |
| BsnI | GGCC | 2 cut(s) | 116, 199 |
| BspACI | CCGC | 1 cut(s) | 132 |
| BspANI | GGCC | 2 cut(s) | 116, 199 |
| BspMI | ACCTGC | 1 cut(s) | 148 |
| BsrFI | RCCGGY | 2 cut(s) | 233, 278 |
| BsrI | ACTGG | 3 cut(s) | 266, 290, 355 |
| BssAI | RCCGGY | 2 cut(s) | 233, 278 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 403 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 384 |
| BstC8I | GCNNGC | 1 cut(s) | 235 |
| BstDEI | CTNAG | 2 cut(s) | 13, 19 |
| BstEII | GGTNACC | 1 cut(s) | 313 |
| BstH2I | RGCGCY | 1 cut(s) | 216 |
| BstHHI | GCGC | 3 cut(s) | 26, 215, 420 |
| BstMAI | GTCTC | 2 cut(s) | 133, 250 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 23, 140, 210, 384 |
| BstNSI | RCATGY | 1 cut(s) | 305 |
| BstPI | GGTNACC | 1 cut(s) | 313 |
| BstSCI | CCNGG | 1 cut(s) | 156 |
| Bsu36I | CCTNAGG | 1 cut(s) | 19 |
| BsuRI | GGCC | 2 cut(s) | 116, 199 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 348 |
| BveI | ACCTGC | 1 cut(s) | 148 |
| Cac8I | GCNNGC | 1 cut(s) | 235 |
| CfoI | GCGC | 3 cut(s) | 26, 215, 420 |
| Cfr10I | RCCGGY | 2 cut(s) | 233, 278 |
| Cfr13I | GGNCC | 2 cut(s) | 114, 197 |
| CviAII | CATG | 4 cut(s) | 111, 201, 302, 423 |
| CviJI | RGCY | 5 cut(s) | 17, 116, 122, 199, 289 |
| CviKI_1 | RGCY | 5 cut(s) | 17, 116, 122, 199, 289 |
| DdeI | CTNAG | 2 cut(s) | 13, 19 |
| EciI | GGCGGA | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 1 cut(s) | 18 |
| Eco81I | CCTNAGG | 1 cut(s) | 19 |
| Eco91I | GGTNACC | 1 cut(s) | 313 |
| EcoO65I | GGTNACC | 1 cut(s) | 313 |
| Esp3I | CGTCTC | 1 cut(s) | 250 |
| FaeI | CATG | 4 cut(s) | 114, 204, 305, 426 |
| FaiI | YATR | 5 cut(s) | 112, 153, 202, 303, 424 |
| FaqI | GGGAC | 2 cut(s) | 140, 374 |
| FatI | CATG | 4 cut(s) | 110, 200, 301, 422 |
| GlaI | GCGC | 3 cut(s) | 25, 214, 419 |
| HaeII | RGCGCY | 1 cut(s) | 216 |
| HaeIII | GGCC | 2 cut(s) | 116, 199 |
| HapII | CCGG | 5 cut(s) | 158, 234, 279, 324, 375 |
| HhaI | GCGC | 3 cut(s) | 26, 215, 420 |
| Hin1II | CATG | 4 cut(s) | 114, 204, 305, 426 |
| Hin6I | GCGC | 3 cut(s) | 24, 213, 418 |
| HinP1I | GCGC | 3 cut(s) | 24, 213, 418 |
| HincII | GTYRAC | 1 cut(s) | 10 |
| HindII | GTYRAC | 1 cut(s) | 10 |
| HindIII | AAGCTT | 1 cut(s) | 120 |
| HinfI | GANTC | 1 cut(s) | 86 |
| HpaII | CCGG | 5 cut(s) | 158, 234, 279, 324, 375 |
| Hpy166II | GTNNAC | 1 cut(s) | 10 |
| Hpy188I | TCNGA | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 335 |
| Hpy8I | GTNNAC | 1 cut(s) | 10 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 403 |
| HpyCH4V | TGCA | 3 cut(s) | 110, 204, 366 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 23, 140, 210, 384 |
| HpyF3I | CTNAG | 2 cut(s) | 13, 19 |
| Hsp92II | CATG | 4 cut(s) | 114, 204, 305, 426 |
| HspAI | GCGC | 3 cut(s) | 24, 213, 418 |
| KroI | GCCGGC | 1 cut(s) | 233 |
| KroNI | GCCGGC | 1 cut(s) | 235 |
| LmnI | GCTCC | 2 cut(s) | 62, 395 |
| MaeIII | GTNAC | 5 cut(s) | 37, 49, 281, 313, 407 |
| MluCI | AATT | 1 cut(s) | 228 |
| MlyI | GAGTC | 1 cut(s) | 80 |
| MnlI | CCTC | 2 cut(s) | 159, 382 |
| MroNI | GCCGGC | 1 cut(s) | 233 |
| MseI | TTAA | 1 cut(s) | 192 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspI | CCGG | 5 cut(s) | 158, 234, 279, 324, 375 |
| MspR9I | CCNGG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 23, 140, 210, 384 |
| NaeI | GCCGGC | 1 cut(s) | 235 |
| NciI | CCSGG | 1 cut(s) | 158 |
| NgoMIV | GCCGGC | 1 cut(s) | 233 |
| NlaIII | CATG | 4 cut(s) | 114, 204, 305, 426 |
| NmuCI | GTSAC | 2 cut(s) | 37, 49 |
| NspI | RCATGY | 1 cut(s) | 305 |
| PdiI | GCCGGC | 1 cut(s) | 235 |
| PleI | GAGTC | 1 cut(s) | 80 |
| PpsI | GAGTC | 1 cut(s) | 80 |
| PspEI | GGTNACC | 1 cut(s) | 313 |
| PspPI | GGNCC | 2 cut(s) | 114, 197 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SaqAI | TTAA | 1 cut(s) | 192 |
| Sau96I | GGNCC | 2 cut(s) | 114, 197 |
| SchI | GAGTC | 1 cut(s) | 80 |
| ScrFI | CCNGG | 1 cut(s) | 158 |
| SetI | ASST | 4 cut(s) | 124, 142, 170, 374 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| Sse9I | AATT | 1 cut(s) | 228 |
| SsiI | CCGC | 1 cut(s) | 132 |
| StyD4I | CCNGG | 1 cut(s) | 156 |
| TaaI | ACNGT | 2 cut(s) | 49, 403 |
| TaqII | GACCGA | 1 cut(s) | 98 |
| TasI | AATT | 1 cut(s) | 228 |
| Tru1I | TTAA | 1 cut(s) | 192 |
| Tru9I | TTAA | 1 cut(s) | 192 |
| TscAI | CASTG | 2 cut(s) | 52, 355 |
| TseFI | GTSAC | 2 cut(s) | 37, 49 |
| Tsp45I | GTSAC | 2 cut(s) | 37, 49 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 354 |
| TspRI | CASTG | 2 cut(s) | 52, 355 |
| XceI | RCATGY | 1 cut(s) | 305 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |