Polygalacturonase-like
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0004926.1_g000014 Rmu_sc0008355.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00128690 |
| rosa_samantha | Rh2CG262900 Rh2DG265400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 323 |
| AcsI | RAATTY | 1 cut(s) | 132 |
| AfaI | GTAC | 1 cut(s) | 280 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 233, 323 |
| AjnI | CCWGG | 1 cut(s) | 226 |
| AoxI | GGCC | 2 cut(s) | 14, 171 |
| ApoI | RAATTY | 1 cut(s) | 132 |
| AspLEI | GCGC | 1 cut(s) | 191 |
| AspS9I | GGNCC | 2 cut(s) | 14, 224 |
| AvaII | GGWCC | 1 cut(s) | 224 |
| BbsI | GAAGAC | 1 cut(s) | 319 |
| BccI | CCATC | 3 cut(s) | 25, 128, 231 |
| BciT130I | CCWGG | 1 cut(s) | 228 |
| Bme1390I | CCNGG | 1 cut(s) | 228 |
| Bme18I | GGWCC | 1 cut(s) | 224 |
| BmgT120I | GGNCC | 2 cut(s) | 14, 224 |
| BmiI | GGNNCC | 1 cut(s) | 15 |
| BmrFI | CCNGG | 1 cut(s) | 228 |
| BmsI | GCATC | 1 cut(s) | 310 |
| BpiI | GAAGAC | 1 cut(s) | 319 |
| BpmI | CTGGAG | 1 cut(s) | 249 |
| BsaWI | WCCGGW | 1 cut(s) | 125 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 233, 323 |
| Bse118I | RCCGGY | 1 cut(s) | 191 |
| Bse1I | ACTGG | 1 cut(s) | 157 |
| Bse3DI | GCAATG | 1 cut(s) | 29 |
| BseBI | CCWGG | 1 cut(s) | 228 |
| BseGI | GGATG | 1 cut(s) | 242 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 233, 323 |
| BseMI | GCAATG | 1 cut(s) | 29 |
| BseNI | ACTGG | 1 cut(s) | 157 |
| BseRI | GAGGAG | 1 cut(s) | 246 |
| BshFI | GGCC | 2 cut(s) | 16, 173 |
| BsiSI | CCGG | 3 cut(s) | 126, 177, 192 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 233, 323 |
| BsnI | GGCC | 2 cut(s) | 16, 173 |
| BspACI | CCGC | 1 cut(s) | 323 |
| BspANI | GGCC | 2 cut(s) | 16, 173 |
| BspLI | GGNNCC | 1 cut(s) | 15 |
| BsrDI | GCAATG | 1 cut(s) | 29 |
| BsrFI | RCCGGY | 1 cut(s) | 191 |
| BsrI | ACTGG | 1 cut(s) | 157 |
| BssAI | RCCGGY | 1 cut(s) | 191 |
| Bst2UI | CCWGG | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 1 cut(s) | 257 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 186 |
| BstDEI | CTNAG | 2 cut(s) | 293, 332 |
| BstEII | GGTNACC | 1 cut(s) | 115 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 231 |
| BstF5I | GGATG | 1 cut(s) | 242 |
| BstHHI | GCGC | 1 cut(s) | 191 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 186, 197 |
| BstNI | CCWGG | 1 cut(s) | 228 |
| BstPI | GGTNACC | 1 cut(s) | 115 |
| BstSCI | CCNGG | 1 cut(s) | 226 |
| BstV2I | GAAGAC | 1 cut(s) | 319 |
| BsuRI | GGCC | 2 cut(s) | 16, 173 |
| BtsCI | GGATG | 1 cut(s) | 242 |
| BtsIMutI | CAGTG | 1 cut(s) | 150 |
| CfoI | GCGC | 1 cut(s) | 191 |
| Cfr10I | RCCGGY | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 2 cut(s) | 14, 224 |
| Csp6I | GTAC | 1 cut(s) | 279 |
| CviJI | RGCY | 3 cut(s) | 16, 50, 173 |
| CviKI_1 | RGCY | 3 cut(s) | 16, 50, 173 |
| CviQI | GTAC | 1 cut(s) | 279 |
| DdeI | CTNAG | 2 cut(s) | 293, 332 |
| Eco147I | AGGCCT | 1 cut(s) | 173 |
| Eco47I | GGWCC | 1 cut(s) | 224 |
| Eco91I | GGTNACC | 1 cut(s) | 115 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 231 |
| EcoO109I | RGGNCCY | 1 cut(s) | 224 |
| EcoO65I | GGTNACC | 1 cut(s) | 115 |
| EcoRI | GAATTC | 1 cut(s) | 132 |
| EcoRII | CCWGG | 1 cut(s) | 226 |
| FaiI | YATR | 2 cut(s) | 71, 353 |
| FauI | CCCGC | 1 cut(s) | 316 |
| FokI | GGATG | 1 cut(s) | 249 |
| GlaI | GCGC | 1 cut(s) | 190 |
| GsuI | CTGGAG | 1 cut(s) | 249 |
| HaeIII | GGCC | 2 cut(s) | 16, 173 |
| HapII | CCGG | 3 cut(s) | 126, 177, 192 |
| HhaI | GCGC | 1 cut(s) | 191 |
| Hin6I | GCGC | 1 cut(s) | 189 |
| HinP1I | GCGC | 1 cut(s) | 189 |
| HinfI | GANTC | 1 cut(s) | 297 |
| HpaII | CCGG | 3 cut(s) | 126, 177, 192 |
| Hpy188III | TCNNGA | 1 cut(s) | 137 |
| Hpy99I | CGWCG | 1 cut(s) | 361 |
| HpyAV | CCTTC | 1 cut(s) | 63 |
| HpyCH4III | ACNGT | 1 cut(s) | 257 |
| HpyCH4IV | ACGT | 1 cut(s) | 22 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 168, 245 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 186, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 293, 332 |
| HpySE526I | ACGT | 1 cut(s) | 22 |
| HspAI | GCGC | 1 cut(s) | 189 |
| LmnI | GCTCC | 1 cut(s) | 197 |
| LpnPI | CCDG | 7 cut(s) | 66, 138, 139, 190, 205, 213, 240 |
| LweI | GCATC | 1 cut(s) | 310 |
| MaeII | ACGT | 1 cut(s) | 22 |
| MaeIII | GTNAC | 4 cut(s) | 83, 115, 251, 265 |
| MboII | GAAGA | 1 cut(s) | 324 |
| MluCI | AATT | 1 cut(s) | 132 |
| MnlI | CCTC | 3 cut(s) | 184, 224, 227 |
| MspI | CCGG | 3 cut(s) | 126, 177, 192 |
| MspR9I | CCNGG | 1 cut(s) | 228 |
| MvaI | CCWGG | 1 cut(s) | 228 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 186, 197 |
| NlaIV | GGNNCC | 1 cut(s) | 15 |
| PceI | AGGCCT | 1 cut(s) | 173 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 261 |
| PfeI | GAWTC | 1 cut(s) | 297 |
| PpuMI | RGGWCCY | 1 cut(s) | 224 |
| Psp5II | RGGWCCY | 1 cut(s) | 224 |
| Psp6I | CCWGG | 1 cut(s) | 226 |
| PspEI | GGTNACC | 1 cut(s) | 115 |
| PspGI | CCWGG | 1 cut(s) | 226 |
| PspN4I | GGNNCC | 1 cut(s) | 15 |
| PspPI | GGNCC | 2 cut(s) | 14, 224 |
| PspPPI | RGGWCCY | 1 cut(s) | 224 |
| RsaI | GTAC | 1 cut(s) | 280 |
| RsaNI | GTAC | 1 cut(s) | 279 |
| Sau96I | GGNCC | 2 cut(s) | 14, 224 |
| ScrFI | CCNGG | 1 cut(s) | 228 |
| SetI | ASST | 3 cut(s) | 25, 186, 229 |
| SfaNI | GCATC | 1 cut(s) | 310 |
| SgrAI | CRCCGGYG | 1 cut(s) | 191 |
| SinI | GGWCC | 1 cut(s) | 224 |
| Sse9I | AATT | 1 cut(s) | 132 |
| SseBI | AGGCCT | 1 cut(s) | 173 |
| SsiI | CCGC | 1 cut(s) | 323 |
| StuI | AGGCCT | 1 cut(s) | 173 |
| StyD4I | CCNGG | 1 cut(s) | 226 |
| TaaI | ACNGT | 1 cut(s) | 257 |
| TaiI | ACGT | 1 cut(s) | 25 |
| TasI | AATT | 1 cut(s) | 132 |
| TfiI | GAWTC | 1 cut(s) | 297 |
| TscAI | CASTG | 1 cut(s) | 157 |
| TspGWI | ACGGA | 1 cut(s) | 156 |
| TspRI | CASTG | 1 cut(s) | 157 |
| VpaK11BI | GGWCC | 1 cut(s) | 224 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 231 |
| XapI | RAATTY | 1 cut(s) | 132 |