Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009047.1

Orthogroup ID

OG0020066

Physical Location & Seq

Genomic Coordinates Reverse (-)

9652 .. 10260

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009047.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgtttagcgggttgctccttaggggaagactaaagaccagagatagggtctcaaggtttagggtgataagtgataactcctgccccttgtgccaagaggataatgaaacagccaatcacctttttggttactgcaggtttgctaaggaagtctggaacctggcaaatatagtttccccaatcaactgggaagagggctaccttaaggtgttcaaggagctcatccttttacaacaatttaatggtttattgtttgaaaaaatcattactatttattggcaaatctggaaggctatgaatgatgttattttccgcaatgcatcacctagtccaagacctgtcacttcagcagctgctatagtgcaaaataactctgatcttcctaccttctctagcaccgggttgccatcccctcatccaaatacaatcaaatggcaatctcctgctaaatactgtgttaaaaacaactttgatggctctgtttgtcaacattctgctacaagaggttttgtaattagggattcctttggaaaaccctctgtttgcagcagcttgacaatttgggaagattacaattctagttgcggaagccactgcccttcaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

202

Amino Acids

22.87

Weight (kDa)

8.94

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020066)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001147.1_g000006 Rmu_sc0009047.1_g000002
rosa_samantha	Rh1AG068000 Rh1AG068300 Rh1AG068500 Rh7AG041800 Rh7DG041900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AciI	CCGC	3 cut(s)	9, 313, 585
AcuI	CTGAAG	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	214, 257, 603
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	3 cut(s)	220, 353, 552
AluI	AGCT	3 cut(s)	220, 353, 552
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	353
ApeKI	GCWGC	4 cut(s)	350, 353, 546, 549
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	76, 110, 315
AxyI	CCTNAGG	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	4 cut(s)	340, 362, 558, 561
BccI	CCATC	2 cut(s)	415, 467
BciT130I	CCWGG	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	3 cut(s)	327, 393, 579
BfmI	CTRYAG	2 cut(s)	133, 357
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	4 cut(s)	351, 354, 547, 550
BlsI	GCNGC	4 cut(s)	352, 355, 548, 551
Bme1390I	CCNGG	2 cut(s)	161, 400
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	161, 400
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	329
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	161
BseGI	GGATG	3 cut(s)	222, 407, 415
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	4 cut(s)	340, 362, 558, 561
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	3 cut(s)	9, 313, 585
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	20, 144
BstF5I	GGATG	3 cut(s)	222, 407, 415
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	159, 398
BstSFI	CTRYAG	2 cut(s)	133, 357
BstV1I	GCAGC	4 cut(s)	340, 362, 558, 561
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	222, 407, 415
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	592
BveI	ACCTGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	353
CviJI	RGCY	8 cut(s)	113, 198, 220, 293, 353, 477, 552, 591
CviKI_1	RGCY	8 cut(s)	113, 198, 220, 293, 353, 477, 552, 591
DdeI	CTNAG	2 cut(s)	20, 144
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	330
Eco81I	CCTNAGG	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	222
FaiI	YATR	3 cut(s)	170, 296, 359
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	4 cut(s)	351, 354, 547, 550
FokI	GGATG	3 cut(s)	209, 394, 402
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	351, 354, 547, 550
FspBI	CTAG	3 cut(s)	327, 393, 579
GluI	GCNGC	4 cut(s)	351, 354, 547, 550
HapII	CCGG	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	1 cut(s)	521
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	3 cut(s)	76, 110, 315
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	2 cut(s)	154, 286
Hpy8I	GTNNAC	1 cut(s)	488
HpyAV	CCTTC	3 cut(s)	283, 397, 609
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	4 cut(s)	135, 320, 364, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	20, 144
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	21, 217
Lsp1109I	GCAGC	4 cut(s)	340, 362, 558, 561
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	3 cut(s)	327, 393, 579
MaeIII	GTNAC	2 cut(s)	128, 340
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	4 cut(s)	39, 203, 371, 578
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	236, 513, 558, 574
MnlI	CCTC	5 cut(s)	91, 187, 423, 497, 547
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	3 cut(s)	204, 240, 459
MspA1I	CMGCKG	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	161, 400
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	376
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	4 cut(s)	352, 355, 548, 551
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	204, 240, 459
SatI	GCNGC	4 cut(s)	351, 354, 547, 550
Sau3AI	GATC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	161, 400
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	133, 357
SmlI	CTYRAG	2 cut(s)	52, 203
SmoI	CTYRAG	2 cut(s)	52, 203
Sse9I	AATT	4 cut(s)	236, 513, 558, 574
SsiI	CCGC	3 cut(s)	9, 313, 585
SspMI	CTAG	3 cut(s)	327, 393, 579
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	159, 398
TaaI	ACNGT	1 cut(s)	455
TasI	AATT	4 cut(s)	236, 513, 558, 574
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	3 cut(s)	204, 240, 459
Tru9I	TTAA	3 cut(s)	204, 240, 459
TscAI	CASTG	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	4 cut(s)	350, 353, 546, 549
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	120, 311
TspRI	CASTG	1 cut(s)	599
Vha464I	CTTAAG	1 cut(s)	203
XspI	CTAG	3 cut(s)	327, 393, 579
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.