Rh7AG041800

23 kDa jasmonate-induced protein-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
2793161 .. 2793508
348 bp
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UTR
Exon/CDS
Intron
Rh7AG041800.1

Sequence Viewer

Length: 240 bp
ATGGCGTGGTCCAACCCATGGTCTACAGACCCTGCAGAGCAGAACTCGGTCTGGACTGAGACCCGTGAAGTTGACCACTACACTGATACTGAATGGGAGCCCATTATTGAACTTACTGTCCCTAGAACCAACCACACTGACACATGGAAGGATTGCGTGTCAGCGATAACAATTACTGATGAAATTTCAGCGACAGTGAAAGCAAAATTCACTTCAAATGCTGATGATGACGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.0

Weight (kDa)

4.07

Isoelectric Point (pI)

20.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020066)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AccI GTMKAC 1 cut(s) 23
AcsI RAATTY 2 cut(s) 183, 206
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 110, 216
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
Alw26I GTCTC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 32
ApoI RAATTY 2 cut(s) 183, 206
AspS9I GGNCC 1 cut(s) 9
AvaII GGWCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 2 cut(s) 24, 33
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 99
BmsI GCATC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 118, 196
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 24, 33
BtgI CCRYGG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 81, 135, 201
CaiI CAGNNNCTG 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 9
CviAII CATG 2 cut(s) 18, 144
CviJI RGCY 1 cut(s) 100
CviKI_1 RGCY 1 cut(s) 100
DdeI CTNAG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 21, 147
FaiI YATR 2 cut(s) 19, 145
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 17, 143
FblI GTMKAC 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 102
FspBI CTAG 1 cut(s) 123
Hin1II CATG 2 cut(s) 21, 147
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 24, 73
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 24, 73
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 118, 196
HpyCH4V TGCA 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 21, 147
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 2 cut(s) 37, 45
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 3 cut(s) 171, 183, 206
MmeI TCCRAC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 17
NlaIII CATG 2 cut(s) 21, 147
NlaIV GGNNCC 1 cut(s) 99
PflMI CCANNNNNTGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 2 cut(s) 24, 33
SinI GGWCC 1 cut(s) 9
Sse9I AATT 3 cut(s) 171, 183, 206
SspMI CTAG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 2 cut(s) 118, 196
TaqII GACCGA 1 cut(s) 37
TasI AATT 3 cut(s) 171, 183, 206
TscAI CASTG 3 cut(s) 88, 142, 201
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 3 cut(s) 88, 142, 201
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 9
XapI RAATTY 2 cut(s) 183, 206
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.