Rh7DG041900

23 kDa jasmonate-induced protein-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
3060563 .. 3060913
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG041900.1

Sequence Viewer

Length: 243 bp
ATGGCGTGGTCCAACCCATGGTCTACAGACCCTGCAGAGCAGAACTCGGTCTGGACTGACACCCGTGAAGTTGACCACTACACTGATACAGAATGGGAGCCCATTCGTGATGAACTTACTGTCCCTAGAACCAACCACAGTGACACATGGAAGGATTGCGTGTCAGCGATAACAATTACTGATGAAATTTCAGCGACAGTGAAAGCAAAATTCACTTCAAATGCTGATGATGACGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.13

Weight (kDa)

4.1

Isoelectric Point (pI)

11.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020066)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AccI GTMKAC 1 cut(s) 23
AcsI RAATTY 2 cut(s) 186, 209
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 219
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AlwNI CAGNNNCTG 1 cut(s) 32
ApoI RAATTY 2 cut(s) 186, 209
AspS9I GGNCC 1 cut(s) 9
AvaII GGWCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 102
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 24, 33
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 99
BmsI GCATC 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 17
Bst4CI ACNGT 3 cut(s) 121, 140, 199
BstDSI CCRYGG 1 cut(s) 17
BstSFI CTRYAG 2 cut(s) 24, 33
BtgI CCRYGG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 81, 145, 204
CaiI CAGNNNCTG 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 9
CviAII CATG 2 cut(s) 18, 147
CviJI RGCY 1 cut(s) 100
CviKI_1 RGCY 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 21, 150
FaiI YATR 2 cut(s) 19, 148
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 17, 146
FblI GTMKAC 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 102
FspBI CTAG 1 cut(s) 126
Hin1II CATG 2 cut(s) 21, 150
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 24, 73
Hpy188III TCNNGA 2 cut(s) 52, 107
Hpy8I GTNNAC 2 cut(s) 24, 73
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 3 cut(s) 121, 140, 199
HpyCH4V TGCA 1 cut(s) 35
Hsp92II CATG 2 cut(s) 21, 150
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 2 cut(s) 37, 45
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 3 cut(s) 174, 186, 209
MmeI TCCRAC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 17
NlaIII CATG 2 cut(s) 21, 150
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 2 cut(s) 24, 33
SinI GGWCC 1 cut(s) 9
Sse9I AATT 3 cut(s) 174, 186, 209
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 3 cut(s) 121, 140, 199
TaqII GACCGA 1 cut(s) 37
TasI AATT 3 cut(s) 174, 186, 209
TscAI CASTG 3 cut(s) 88, 145, 204
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 126, 198
TspRI CASTG 3 cut(s) 88, 145, 204
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 9
XapI RAATTY 2 cut(s) 186, 209
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.