Rh1AG068000

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020066
Physical Location & Seq
Reverse (-)
11396840 .. 11397841
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG068000.1

Sequence Viewer

Length: 453 bp
ATGGCGAAAGTCCACATTGACAATCGTACTTCGAACCCTATGAGGTTTCATTCTAATGAAAATAGGCATGGGTACCCTAGTGCAGCATACCCATCAAAAATTGAAAAGGGCCAGGGGGCAAGTTTTTCGAACACCAAAGACTCATTTGGATCTGTAGCAGCTGTTGTGTTTCGCGGCAAGATCGGAACTGAGGACTGTGACCACCTGATTGCGTGGTCCAACCCAAATTTCCTAAATTCCCAAGGACAATATGGGAACTCGGTCTGGGTTGAGACCCGTGAAGCTGGCAACTACACTGACGTCGTATTGAAGAATATATATGACGAGATGATAGATAAGCCTCGCAGCAACCACCATGACGAATGGAATGGATTCGTGTCAAATATAACAATTACCAATGAAACTTCCGCGAAAGTGGAAGCAACATTCACTTTTAAAAACAACGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.81

Weight (kDa)

6.04

Isoelectric Point (pI)

22.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 4 - 131 4.5e-10 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020066)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001147.1_g000006 Rmu_sc0009047.1_g000002
rosa_samantha Rh1AG068000 Rh1AG068300 Rh1AG068500 Rh7AG041800 Rh7DG041900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 72
AccII CGCG 2 cut(s) 174, 410
AciI CCGC 2 cut(s) 174, 408
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 2 cut(s) 226, 235
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 28, 74
AgsI TTSAA 2 cut(s) 104, 310
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 2 cut(s) 161, 284
AluI AGCT 2 cut(s) 161, 284
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 3 cut(s) 83, 158, 345
ApoI RAATTY 2 cut(s) 226, 235
Asp700I GAANNNNTTC 1 cut(s) 371
Asp718I GGTACC 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 109, 216
AsuII TTCGAA 2 cut(s) 32, 128
AvaII GGWCC 1 cut(s) 216
BaeI ACNNNNGTAYC 2 cut(s) 64, 97
BanI GGYRCC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 95, 170, 357
BccI CCATC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 4 cut(s) 84, 159, 175, 346
BlsI GCNGC 4 cut(s) 85, 160, 176, 347
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 109, 216
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 436
Bpu14I TTCGAA 2 cut(s) 32, 128
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 112, 241
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 112, 241
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 3 cut(s) 95, 170, 357
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 2 cut(s) 174, 410
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 266
BsnI GGCC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 266
Bsp119I TTCGAA 2 cut(s) 32, 128
Bsp143I GATC 2 cut(s) 149, 180
BspACI CCGC 2 cut(s) 174, 408
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 2 cut(s) 174, 410
BspLI GGNNCC 1 cut(s) 74
BspPI GGATC 1 cut(s) 157
BspT104I TTCGAA 2 cut(s) 32, 128
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 112, 241
BssMI GATC 2 cut(s) 149, 180
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 300
BstBI TTCGAA 2 cut(s) 32, 128
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 174, 410
BstKTI GATC 2 cut(s) 152, 183
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 149, 180
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 2 cut(s) 174, 410
BstV1I GCAGC 3 cut(s) 95, 170, 357
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 109, 216
Csp6I GTAC 2 cut(s) 27, 73
CviAII CATG 2 cut(s) 68, 356
CviJI RGCY 4 cut(s) 111, 161, 284, 340
CviKI_1 RGCY 4 cut(s) 111, 161, 284, 340
CviQI GTAC 2 cut(s) 27, 73
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 151, 182
DpnII GATC 2 cut(s) 149, 180
DraI TTTAAA 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 71, 359
FaiI YATR 9 cut(s) 41, 69, 88, 252, 317, 319, 321, 357, 386
FatI CATG 2 cut(s) 67, 355
Fnu4HI GCNGC 4 cut(s) 84, 159, 175, 346
Fsp4HI GCNGC 4 cut(s) 84, 159, 175, 346
FspBI CTAG 1 cut(s) 78
GluI GCNGC 4 cut(s) 84, 159, 175, 346
HaeIII GGCC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 2 cut(s) 71, 359
HinfI GANTC 2 cut(s) 140, 372
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 71, 359
KpnI GGTACC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 149, 180
LpnPI CCDG 5 cut(s) 98, 125, 218, 250, 270
Lsp1109I GCAGC 3 cut(s) 95, 170, 357
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 151, 182
MboI GATC 2 cut(s) 149, 180
MboII GAAGA 1 cut(s) 322
MflI RGATCY 1 cut(s) 149
MluCI AATT 4 cut(s) 99, 226, 235, 390
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 36, 184, 351
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 174, 410
NdeII GATC 2 cut(s) 149, 180
NlaIII CATG 2 cut(s) 71, 359
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 197
NspV TTCGAA 2 cut(s) 32, 128
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 1 cut(s) 372
PkrI GCNGC 4 cut(s) 85, 160, 176, 347
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 2 cut(s) 109, 216
PsuI RGATCY 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 2 cut(s) 28, 74
RsaNI GTAC 2 cut(s) 27, 73
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 4 cut(s) 84, 159, 175, 346
Sau3AI GATC 2 cut(s) 149, 180
Sau96I GGNCC 2 cut(s) 109, 216
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 113
SetI ASST 5 cut(s) 47, 163, 207, 286, 303
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 153
SfuI TTCGAA 2 cut(s) 32, 128
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 4 cut(s) 99, 226, 235, 390
SsiI CCGC 2 cut(s) 174, 408
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 32, 128
TaqII GACCGA 1 cut(s) 250
TasI AATT 4 cut(s) 99, 226, 235, 390
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 3 cut(s) 83, 158, 345
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 38, 72, 414
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 2 cut(s) 226, 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 78
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.