Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009296.1

Orthogroup ID

OG0023035

Physical Location & Seq

Genomic Coordinates Reverse (-)

54786 .. 55316

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009296.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgcttgttcaaaacaagttcttggttctgatagtactggtctttgttgttggaacaatcaagtttggggagcgaacttgtgctctgtatcttgcaagtactctagaccattttggggagactgtattgcccaagtccgttgttggacctgactatgaagaaactgtagcaatccacacttcaatgaggtcagtcgaagtcccaacaacacaagtagtggtgccaatcaggccaaatattgggaatgcatataaagatccccagtttacagttgagggaaatctcaaagaatctttaaatgacatgcaattgttgcaagaagcgtactacctctttgaaagcttcaaaggactcattattggcttctttctcagctccaaaaacccgaaactgagtcgatatttcttccttaaaagaacctatactagagcttttcagttgatagagtacgaactcagcttcatgtatgaggttcttcacaccaaggttgttgtggtgcgccacaaaattgggtgcacctctgcttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4220 DUF594

Protein Analysis

176

Amino Acids

20.16

Weight (kDa)

8.48

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023035)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000288.1_g000034 Rmu_sc0008085.1_g000020 Rmu_sc0009296.1_g000016
rosa_rugosa	Rorug03G0157200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	239
AclWI	GGATC	1 cut(s)	251
AfaI	GTAC	4 cut(s)	36, 100, 326, 449
AfiI	CCNNNNNNNGG	3 cut(s)	115, 239, 525
AgsI	TTSAA	4 cut(s)	11, 183, 338, 346
AluBI	AGCT	4 cut(s)	342, 375, 431, 459
AluI	AGCT	4 cut(s)	342, 375, 431, 459
Alw21I	GWGCWC	2 cut(s)	85, 518
Alw26I	GTCTC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	514
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	230
ApaLI	GTGCAC	1 cut(s)	514
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	220
Bbv12I	GWGCWC	2 cut(s)	85, 518
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	104, 426
BfmI	CTRYAG	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	229
BmcAI	AGTACT	2 cut(s)	36, 100
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 239, 525
Bse1I	ACTGG	2 cut(s)	42, 262
BseDI	CCNNGG	1 cut(s)	483
BseLI	CCNNNNNNNGG	3 cut(s)	115, 239, 525
BseMII	CTCAG	3 cut(s)	383, 385, 469
BseNI	ACTGG	2 cut(s)	42, 262
BseSI	GKGCMC	1 cut(s)	518
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	85, 518
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	115, 239, 525
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	85, 518
Bsp143I	GATC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	3 cut(s)	384, 384, 468
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	42, 262
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	124, 166, 271
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	371, 392, 455
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 313
BstNSI	RCATGY	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	232
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	4 cut(s)	35, 99, 325, 448
CviAII	CATG	2 cut(s)	304, 463
CviJI	RGCY	6 cut(s)	232, 342, 363, 375, 431, 459
CviKI_1	RGCY	6 cut(s)	232, 342, 363, 375, 431, 459
CviQI	GTAC	4 cut(s)	35, 99, 325, 448
DdeI	CTNAG	3 cut(s)	371, 392, 455
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraI	TTTAAA	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	2 cut(s)	307, 466
FaiI	YATR	7 cut(s)	156, 250, 252, 305, 423, 464, 468
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	303, 462
FspBI	CTAG	2 cut(s)	104, 426
GlaI	GCGC	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	2 cut(s)	307, 466
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	290, 351, 394
Hpy166II	GTNNAC	2 cut(s)	267, 516
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	267, 516
HpyCH4III	ACNGT	3 cut(s)	124, 166, 271
HpyCH4V	TGCA	5 cut(s)	95, 248, 307, 316, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 313
HpyF3I	CTNAG	3 cut(s)	371, 392, 455
Hsp92II	CATG	2 cut(s)	307, 466
HspAI	GCGC	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	70, 380
LpnPI	CCDG	4 cut(s)	23, 162, 214, 275
MaeI	CTAG	2 cut(s)	104, 426
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	170, 397, 467
MfeI	CAATTG	1 cut(s)	308
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	85, 518
MluCI	AATT	2 cut(s)	308, 507
MlyI	GAGTC	2 cut(s)	345, 403
MmeI	TCCRAC	2 cut(s)	31, 124
MnlI	CCTC	5 cut(s)	180, 268, 341, 463, 529
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	2 cut(s)	296, 411
MslI	CAYNNNNRTG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	229, 313
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	307, 466
NlaIV	GGNNCC	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	1 cut(s)	307
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	239
PleI	GAGTC	2 cut(s)	345, 402
PpsI	GAGTC	2 cut(s)	345, 402
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	4 cut(s)	36, 100, 326, 449
RsaNI	GTAC	4 cut(s)	35, 99, 325, 448
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	296, 411
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	146
ScaI	AGTACT	2 cut(s)	36, 100
SchI	GAGTC	2 cut(s)	345, 403
SduI	GDGCHC	2 cut(s)	85, 518
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	308, 507
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	2 cut(s)	104, 426
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	124, 166, 271
TaqI	TCGA	2 cut(s)	195, 397
TasI	AATT	2 cut(s)	308, 507
TatI	WGTACW	2 cut(s)	34, 98
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	296, 411
Tru9I	TTAA	2 cut(s)	296, 411
TspDTI	ATGAA	2 cut(s)	171, 451
TspGWI	ACGGA	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	239
VneI	GTGCAC	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	2 cut(s)	104, 426
ZrmI	AGTACT	2 cut(s)	36, 100
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.