Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009453.1

Orthogroup ID

OG0021618

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3526

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 643 bp

atacttggctcctgaatatgcatccagtggaaagctcagtgataagtcagatgtcttctcattcggagtcgtgctattggaattgattactggacgccaacccattgataaaactcattccttcactgatgatagcatggcaaggcctttgctcgcgcgagcattggaaaaggggaactttgatggtcttgttgatgaaaggttgcagaaggattacaactccagcgaaatggctcgtatgattgcctgcgctgctgcttctgtgcgtcattctgcccgccgtcggccaaaaatgagccagcaggcggttccaggcggcaacgacggcacggggctagtcggagggaggctggaggcgtcccagacctcttctaggcagcgatcggggccagaggaggtcggggttgccggtttatgggcagccacctcacctacaattgcaggttctgtgcagcgctgcagaacggttgccggcgactccacccaaccgcagacccgcttcgcagacccccagcgtccatttcgcaagccgcgccactccgtccacgctcgattgaggccagaggagcgacgtccccactttttctgggttgcggacgtccgctctcgaacggctctttatatatatatatatatatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

213

Amino Acids

23.63

Weight (kDa)

9.88

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021618)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002087.1_g000013 Rmu_sc0009453.1_g000001 Rmu_ssc0000252.1_g000014
rosa_roxburghii	Rroxscaffold_4G00298070
rosa_rugosa	Rorug06G0511100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	575, 601
Acc36I	ACCTGC	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	604
AccII	CGCG	3 cut(s)	156, 158, 533
AciI	CCGC	8 cut(s)	278, 306, 316, 489, 497, 531, 594, 602
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	4 cut(s)	95, 357, 572, 598
AfeI	AGCGCT	1 cut(s)	456
AfiI	CCNNNNNNNGG	4 cut(s)	283, 305, 373, 415
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	447
Aor51HI	AGCGCT	1 cut(s)	456
AoxI	GGCC	4 cut(s)	144, 285, 387, 558
ApeKI	GCWGC	6 cut(s)	252, 255, 377, 420, 452, 457
AspLEI	GCGC	4 cut(s)	158, 252, 457, 535
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	47
BbvI	GCAGC	6 cut(s)	239, 242, 389, 432, 444, 464
BccI	CCATC	1 cut(s)	177
BceAI	ACGGC	3 cut(s)	265, 341, 628
BciT130I	CCWGG	1 cut(s)	313
BfaI	CTAG	2 cut(s)	336, 373
BfmI	CTRYAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	432
BisI	GCNGC	8 cut(s)	253, 256, 317, 378, 421, 453, 458, 531
BlsI	GCNGC	8 cut(s)	254, 257, 318, 379, 422, 454, 459, 532
Bme1390I	CCNGG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	3 cut(s)	10, 310, 388
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	47
BpmI	CTGGAG	2 cut(s)	206, 372
BsaHI	GRCGYC	4 cut(s)	95, 357, 572, 598
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 305, 373, 415
Bse118I	RCCGGY	2 cut(s)	408, 471
Bse1I	ACTGG	2 cut(s)	25, 95
BseBI	CCWGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	4 cut(s)	283, 305, 373, 415
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	25, 95
BseRI	GAGGAG	2 cut(s)	408, 579
BseXI	GCAGC	6 cut(s)	239, 242, 389, 432, 444, 464
BseYI	CCCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	3 cut(s)	156, 158, 533
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	146, 287, 389, 560
BsiEI	CGRYCG	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	409, 472
BslFI	GGGAC	2 cut(s)	344, 559
BslI	CCNNNNNNNGG	4 cut(s)	283, 305, 373, 415
BsmFI	GGGAC	2 cut(s)	344, 559
BsnI	GGCC	4 cut(s)	146, 287, 389, 560
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	8 cut(s)	278, 306, 316, 489, 497, 531, 594, 602
BspANI	GGCC	4 cut(s)	146, 287, 389, 560
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	3 cut(s)	156, 158, 533
BspLI	GGNNCC	3 cut(s)	10, 310, 388
BspMAI	CTGCAG	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	432
BsrBI	CCGCTC	1 cut(s)	604
BsrFI	RCCGGY	2 cut(s)	408, 471
BsrI	ACTGG	2 cut(s)	25, 95
BssAI	RCCGGY	2 cut(s)	408, 471
BssMI	GATC	1 cut(s)	381
BssNI	GRCGYC	4 cut(s)	95, 357, 572, 598
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	4 cut(s)	95, 357, 572, 598
BstC8I	GCNNGC	8 cut(s)	154, 160, 248, 278, 300, 304, 473, 528
BstDEI	CTNAG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	3 cut(s)	156, 158, 533
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	4 cut(s)	158, 252, 457, 535
BstKTI	GATC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	381
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	5 cut(s)	252, 325, 386, 532, 566
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	458
BstUI	CGCG	3 cut(s)	156, 158, 533
BstV1I	GCAGC	6 cut(s)	239, 242, 389, 432, 444, 464
BstV2I	GAAGAC	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	146, 287, 389, 560
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	32, 44, 124
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	8 cut(s)	154, 160, 248, 278, 300, 304, 473, 528
CaiI	CAGNNNCTG	1 cut(s)	447
CfoI	GCGC	4 cut(s)	158, 252, 457, 535
Cfr10I	RCCGGY	2 cut(s)	408, 471
Cfr13I	GGNCC	1 cut(s)	387
CseI	GACGC	4 cut(s)	103, 255, 346, 504
CviAII	CATG	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco147I	AGGCCT	1 cut(s)	146
Eco47III	AGCGCT	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	23
FaeI	CATG	1 cut(s)	140
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	2 cut(s)	344, 559
FatI	CATG	1 cut(s)	136
FauI	CCCGC	2 cut(s)	285, 504
Fnu4HI	GCNGC	8 cut(s)	253, 256, 317, 378, 421, 453, 458, 531
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	8 cut(s)	253, 256, 317, 378, 421, 453, 458, 531
FspBI	CTAG	2 cut(s)	336, 373
GlaI	GCGC	4 cut(s)	157, 251, 456, 534
GluI	GCNGC	8 cut(s)	253, 256, 317, 378, 421, 453, 458, 531
GsaI	CCCAGC	1 cut(s)	515
GsuI	CTGGAG	2 cut(s)	206, 372
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	4 cut(s)	146, 287, 389, 560
HapII	CCGG	2 cut(s)	409, 472
HgaI	GACGC	4 cut(s)	103, 255, 346, 504
HhaI	GCGC	4 cut(s)	158, 252, 457, 535
Hin1I	GRCGYC	4 cut(s)	95, 357, 572, 598
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	4 cut(s)	156, 250, 455, 533
HinP1I	GCGC	4 cut(s)	156, 250, 455, 533
HinfI	GANTC	2 cut(s)	67, 477
HpaII	CCGG	2 cut(s)	409, 472
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	50, 66, 342
Hpy188III	TCNNGA	2 cut(s)	12, 607
Hpy8I	GTNNAC	1 cut(s)	545
Hpy99I	CGWCG	3 cut(s)	286, 327, 574
HpyAV	CCTTC	2 cut(s)	131, 203
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	2 cut(s)	572, 598
HpyCH4V	TGCA	5 cut(s)	21, 206, 441, 452, 460
HpyF10VI	GCNNNNNNNGC	5 cut(s)	252, 325, 386, 532, 566
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	2 cut(s)	572, 598
Hsp92I	GRCGYC	4 cut(s)	95, 357, 572, 598
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	4 cut(s)	156, 250, 455, 533
KroI	GCCGGC	1 cut(s)	471
KroNI	GCCGGC	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	14, 566
Lsp1109I	GCAGC	6 cut(s)	239, 242, 389, 432, 444, 464
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	2 cut(s)	336, 373
MaeII	ACGT	2 cut(s)	572, 598
MalI	GATC	1 cut(s)	383
MbiI	CCGCTC	1 cut(s)	604
MboI	GATC	1 cut(s)	381
MboII	GAAGA	2 cut(s)	47, 361
MfeI	CAATTG	1 cut(s)	436
MluCI	AATT	2 cut(s)	81, 436
MlyI	GAGTC	2 cut(s)	76, 471
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	9 cut(s)	336, 340, 347, 377, 386, 389, 437, 550, 557
Mph1103I	ATGCAT	1 cut(s)	23
MroNI	GCCGGC	1 cut(s)	471
MspI	CCGG	2 cut(s)	409, 472
MspR9I	CCNGG	1 cut(s)	313
MunI	CAATTG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	313
MvnI	CGCG	3 cut(s)	156, 158, 533
MwoI	GCNNNNNNNGC	5 cut(s)	252, 325, 386, 532, 566
NaeI	GCCGGC	1 cut(s)	473
NdeII	GATC	1 cut(s)	381
NgoMIV	GCCGGC	1 cut(s)	471
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	3 cut(s)	10, 310, 388
NsiI	ATGCAT	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	473
PkrI	GCNGC	8 cut(s)	254, 257, 318, 379, 422, 454, 459, 532
Ple19I	CGATCG	1 cut(s)	384
PleI	GAGTC	2 cut(s)	75, 471
PpsI	GAGTC	2 cut(s)	75, 471
Psp6I	CCWGG	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	10, 310, 388
PspPI	GGNCC	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	447
PvuI	CGATCG	1 cut(s)	384
SatI	GCNGC	8 cut(s)	253, 256, 317, 378, 421, 453, 458, 531
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	2 cut(s)	76, 471
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	9 cut(s)	37, 204, 369, 400, 429, 434, 446, 575, 601
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	81, 436
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	8 cut(s)	278, 306, 316, 489, 497, 531, 594, 602
SspMI	CTAG	2 cut(s)	336, 373
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	2 cut(s)	575, 601
TaqI	TCGA	2 cut(s)	551, 608
TasI	AATT	2 cut(s)	81, 436
TauI	GCSGC	2 cut(s)	319, 533
TscAI	CASTG	3 cut(s)	32, 44, 131
TseI	GCWGC	6 cut(s)	252, 255, 377, 420, 452, 457
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	3 cut(s)	32, 44, 131
XagI	CCTNNNNNAGG	1 cut(s)	371
XspI	CTAG	2 cut(s)	336, 373
ZraI	GACGTC	2 cut(s)	573, 599
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.