Rroxscaffold_4G00298070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0021618
Physical Location & Seq
Reverse (-)
17930206 .. 17930481
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298070.1

Sequence Viewer

Length: 276 bp
ATGTCCGCACTTTCGCTAAAGTGTCGACGTCGATGCGGCGGGAGGCTTCCAAGGGGCTGCGACGGCGCGGGGCTGGCCGGAGGCGTCCCGGACCTCTTCGGGCGGCGTTTGAGGTCGGAGGAAGTCGGCCTTGCCGGTTTACGGGCAGCCACCTCACCTGCGGTTGCAGGTTCTTTGCAGCACCGCGAAGCTGTCGCCGGAGGCTCCACCGGACAACGGACCCATCCGCACGACCCCGGCGTCCCTCCGGCGTCCCTCCGCAAGCCGCGCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.4

Weight (kDa)

11.61

Isoelectric Point (pI)

75.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021618)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002087.1_g000013 Rmu_sc0009453.1_g000001 Rmu_ssc0000252.1_g000014
rosa_roxburghii Rroxscaffold_4G00298070
rosa_rugosa Rorug06G0511100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 1 cut(s) 31
Acc36I ACCTGC 2 cut(s) 158, 166
AccI GTMKAC 1 cut(s) 25
AccII CGCG 3 cut(s) 68, 186, 268
AcoI YGGCCR 1 cut(s) 75
AcyI GRCGYC 4 cut(s) 28, 84, 240, 251
AfiI CCNNNNNNNGG 2 cut(s) 141, 216
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 75, 127
ApeKI GCWGC 3 cut(s) 57, 146, 178
AspLEI GCGC 2 cut(s) 68, 270
AspS9I GGNCC 2 cut(s) 91, 219
AsuC2I CCSGG 2 cut(s) 89, 237
AsuHPI GGTGA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 91, 219
BbvI GCAGC 3 cut(s) 44, 158, 190
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BcnI CCSGG 2 cut(s) 89, 237
BfaI CTAG 1 cut(s) 274
BfuAI ACCTGC 2 cut(s) 158, 166
BisI GCNGC 7 cut(s) 37, 58, 104, 147, 179, 266, 271
BlsI GCNGC 7 cut(s) 38, 59, 105, 148, 180, 267, 272
Bme1390I CCNGG 2 cut(s) 89, 237
Bme18I GGWCC 2 cut(s) 91, 219
BmgT120I GGNCC 2 cut(s) 91, 219
BmiI GGNNCC 2 cut(s) 205, 221
BmrFI CCNGG 2 cut(s) 89, 237
BmsI GCATC 1 cut(s) 23
BpuMI CCSGG 2 cut(s) 89, 237
BsaHI GRCGYC 4 cut(s) 28, 84, 240, 251
BsaJI CCNNGG 2 cut(s) 50, 235
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 216
Bse118I RCCGGY 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 50, 235
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 141, 216
BseXI GCAGC 3 cut(s) 44, 158, 190
Bsh1236I CGCG 3 cut(s) 68, 186, 268
BshFI GGCC 2 cut(s) 77, 129
BsiSI CCGG 7 cut(s) 78, 89, 135, 198, 210, 237, 248
BslFI GGGAC 3 cut(s) 71, 227, 238
BslI CCNNNNNNNGG 2 cut(s) 141, 216
BsmFI GGGAC 3 cut(s) 71, 227, 238
BsnI GGCC 2 cut(s) 77, 129
BspANI GGCC 2 cut(s) 77, 129
BspFNI CGCG 3 cut(s) 68, 186, 268
BspLI GGNNCC 2 cut(s) 205, 221
BspMI ACCTGC 2 cut(s) 158, 166
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 50, 235
BssNI GRCGYC 4 cut(s) 28, 84, 240, 251
BssT1I CCWWGG 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 4 cut(s) 28, 84, 240, 251
BstC8I GCNNGC 2 cut(s) 75, 263
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 3 cut(s) 68, 186, 268
BstHHI GCGC 2 cut(s) 68, 270
BstMWI GCNNNNNNNGC 3 cut(s) 63, 74, 267
BstSCI CCNGG 2 cut(s) 87, 235
BstUI CGCG 3 cut(s) 68, 186, 268
BstV1I GCAGC 3 cut(s) 44, 158, 190
BsuRI GGCC 2 cut(s) 77, 129
BtsCI GGATG 1 cut(s) 223
BveI ACCTGC 2 cut(s) 158, 166
Cac8I GCNNGC 2 cut(s) 75, 263
CfoI GCGC 2 cut(s) 68, 270
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 91, 219
CseI GACGC 3 cut(s) 73, 229, 240
CviJI RGCY 9 cut(s) 46, 57, 73, 77, 129, 149, 191, 204, 265
CviKI_1 RGCY 9 cut(s) 46, 57, 73, 77, 129, 149, 191, 204, 265
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 91, 219
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 3 cut(s) 71, 227, 238
FauI CCCGC 2 cut(s) 32, 61
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 7 cut(s) 37, 58, 104, 147, 179, 266, 271
FokI GGATG 1 cut(s) 210
Fsp4HI GCNGC 7 cut(s) 37, 58, 104, 147, 179, 266, 271
FspBI CTAG 1 cut(s) 274
GlaI GCGC 2 cut(s) 67, 269
GluI GCNGC 7 cut(s) 37, 58, 104, 147, 179, 266, 271
HaeIII GGCC 2 cut(s) 77, 129
HapII CCGG 7 cut(s) 78, 89, 135, 198, 210, 237, 248
HgaI GACGC 3 cut(s) 73, 229, 240
HhaI GCGC 2 cut(s) 68, 270
Hin1I GRCGYC 4 cut(s) 28, 84, 240, 251
Hin6I GCGC 2 cut(s) 66, 268
HinP1I GCGC 2 cut(s) 66, 268
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HpaII CCGG 7 cut(s) 78, 89, 135, 198, 210, 237, 248
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 2 cut(s) 26, 140
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 26, 140
Hpy99I CGWCG 3 cut(s) 30, 33, 65
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 167, 178
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 74, 267
HpySE526I ACGT 1 cut(s) 28
Hsp92I GRCGYC 4 cut(s) 28, 84, 240, 251
HspAI GCGC 2 cut(s) 66, 268
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 3 cut(s) 44, 158, 190
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 274
MaeII ACGT 1 cut(s) 28
MboII GAAGA 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 9 cut(s) 36, 74, 104, 105, 112, 163, 194, 255, 266
MspI CCGG 7 cut(s) 78, 89, 135, 198, 210, 237, 248
MspR9I CCNGG 2 cut(s) 89, 237
MvnI CGCG 3 cut(s) 68, 186, 268
MwoI GCNNNNNNNGC 3 cut(s) 63, 74, 267
NciI CCSGG 2 cut(s) 89, 237
NlaIV GGNNCC 2 cut(s) 205, 221
PaqCI CACCTGC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 7 cut(s) 38, 59, 105, 148, 180, 267, 272
PspN4I GGNNCC 2 cut(s) 205, 221
PspPI GGNCC 2 cut(s) 91, 219
SalI GTCGAC 1 cut(s) 24
SatI GCNGC 7 cut(s) 37, 58, 104, 147, 179, 266, 271
Sau96I GGNCC 2 cut(s) 91, 219
ScrFI CCNGG 2 cut(s) 89, 237
SetI ASST 7 cut(s) 31, 96, 116, 155, 160, 172, 193
SfaNI GCATC 1 cut(s) 23
SinI GGWCC 2 cut(s) 91, 219
SspMI CTAG 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 87, 235
StyI CCWWGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 25, 31
TauI GCSGC 4 cut(s) 39, 106, 268, 273
TseI GCWGC 3 cut(s) 57, 146, 178
TspGWI ACGGA 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 91, 219
XmiI GTMKAC 1 cut(s) 25
XspI CTAG 1 cut(s) 274
ZraI GACGTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.