Rmu_ssc0000252.1_g000014

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000252.1
OG0021618
Physical Location & Seq
Reverse (-)
75178 .. 77846
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000252.1_g000014.1.cds

Sequence Viewer

Length: 717 bp
atgttgcaggaagcggtgaatgtttctatgggaaatttgtacgagacgggttgcaggcggcttccaggcggcggcggcagcgcggggctggccggagggaggccggaggcgtcccagacctcttctgggcgacgttcgaggtcagaggaggtcgggcttgccggtttctgggcagccacctcacctgcagttgcaggttctgtgcagcacagcagaaccgtcgccggcgactccaccggaccgcagacccctccgcacgacccccagcatccctccggcaagccacgcggcgctgtcgcctctcgatcgaagccggaagagcgatgtccgcaacccagaaaatttaacggcaagtcgttttctactgcttcaatttgtcaactcattccgggtcatgttagagcggctaatcagcttgcaaaggctccaatgagtaattcaattcaagatctacaaatattaaagagttttggagcagtgtgtcgtttacggagagcccctagagtgattgaggttgttcgacatcctcagatcattaggtgggtgaagtttatcttagatggtgcttggaagcatgtagaaggtgttagaggttttggggcagtattttgtgactttaaaggtcatgttctagatgttttttcttccaacattgacattcctagttctatagcagcagaggttttggcagttataacgactattgagcttacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

238

Amino Acids

25.3

Weight (kDa)

9.9

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021618)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002087.1_g000013 Rmu_sc0009453.1_g000001 Rmu_ssc0000252.1_g000014
rosa_roxburghii Rroxscaffold_4G00298070
rosa_rugosa Rorug06G0511100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 2 cut(s) 185, 193
AccBSI CCGCTC 1 cut(s) 404
AccII CGCG 2 cut(s) 83, 288
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 2 cut(s) 34, 341
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 4 cut(s) 71, 99, 126, 168
AgsI TTSAA 3 cut(s) 372, 441, 446
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 421, 453
AluBI AGCT 2 cut(s) 415, 709
AluI AGCT 2 cut(s) 415, 709
Alw26I GTCTC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 2 cut(s) 90, 101
ApeKI GCWGC 4 cut(s) 78, 173, 205, 674
ApoI RAATTY 2 cut(s) 34, 341
AspLEI GCGC 2 cut(s) 83, 293
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 3 cut(s) 28, 174, 556
AvaII GGWCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 499
BbvI GCAGC 4 cut(s) 90, 185, 217, 686
BccI CCATC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 364
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 66
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 3 cut(s) 501, 632, 663
BfmI CTRYAG 2 cut(s) 186, 669
BfoI RGCGCY 1 cut(s) 294
BfuAI ACCTGC 2 cut(s) 185, 193
BglII AGATCT 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 66, 390
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 2 cut(s) 66, 390
BmsI GCATC 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 99, 126, 168
Bse118I RCCGGY 2 cut(s) 161, 224
BseBI CCWGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 268, 523
BseLI CCNNNNNNNGG 4 cut(s) 71, 99, 126, 168
BseMII CTCAG 1 cut(s) 542
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 4 cut(s) 90, 185, 217, 686
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 224
Bsh1236I CGCG 2 cut(s) 83, 288
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 92, 103
BsiEI CGRYCG 1 cut(s) 308
BsiSI CCGG 8 cut(s) 93, 104, 162, 225, 237, 276, 314, 389
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 4 cut(s) 71, 99, 126, 168
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 92, 103
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 305, 448, 531
BspANI GGCC 2 cut(s) 92, 103
BspCNI CTCAG 1 cut(s) 541
BspFNI CGCG 2 cut(s) 83, 288
BspLI GGNNCC 1 cut(s) 426
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 2 cut(s) 185, 193
BspQI GCTCTTC 1 cut(s) 312
BsrBI CCGCTC 1 cut(s) 404
BsrFI RCCGGY 2 cut(s) 161, 224
BssAI RCCGGY 2 cut(s) 161, 224
BssMI GATC 3 cut(s) 305, 448, 531
BssNI GRCGYC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 2 cut(s) 127, 312
BstACI GRCGYC 1 cut(s) 110
BstC8I GCNNGC 6 cut(s) 56, 90, 159, 226, 281, 417
BstDEI CTNAG 3 cut(s) 528, 556, 714
BstF5I GGATG 2 cut(s) 268, 523
BstFNI CGCG 2 cut(s) 83, 288
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 2 cut(s) 83, 293
BstKTI GATC 3 cut(s) 308, 451, 534
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 3 cut(s) 305, 448, 531
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 6 cut(s) 75, 78, 89, 285, 319, 328
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 64, 388
BstSFI CTRYAG 2 cut(s) 186, 669
BstUI CGCG 2 cut(s) 83, 288
BstV1I GCAGC 4 cut(s) 90, 185, 217, 686
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 2 cut(s) 92, 103
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 2 cut(s) 268, 523
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 483
BveI ACCTGC 2 cut(s) 185, 193
Cac8I GCNNGC 6 cut(s) 56, 90, 159, 226, 281, 417
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 2 cut(s) 83, 293
Cfr10I RCCGGY 2 cut(s) 161, 224
Cfr13I GGNCC 1 cut(s) 239
CpoI CGGWCCG 1 cut(s) 239
CseI GACGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 40
CspI CGGWCCG 1 cut(s) 239
CviAII CATG 3 cut(s) 395, 575, 626
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 3 cut(s) 528, 556, 714
DpnI GATC 3 cut(s) 307, 450, 533
DpnII GATC 3 cut(s) 305, 448, 531
DraI TTTAAA 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 127, 312
EarI CTCTTC 2 cut(s) 127, 312
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 499
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 3 cut(s) 398, 578, 629
FaiI YATR 6 cut(s) 29, 396, 576, 627, 671, 695
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 1 cut(s) 97
FatI CATG 3 cut(s) 394, 574, 625
FauI CCCGC 1 cut(s) 76
FokI GGATG 2 cut(s) 255, 510
FriOI GRGCYC 1 cut(s) 499
FspBI CTAG 3 cut(s) 501, 632, 663
GlaI GCGC 2 cut(s) 82, 292
GsaI CCCAGC 1 cut(s) 268
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 2 cut(s) 92, 103
HapII CCGG 8 cut(s) 93, 104, 162, 225, 237, 276, 314, 389
HgaI GACGC 1 cut(s) 99
HhaI GCGC 2 cut(s) 83, 293
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 3 cut(s) 398, 578, 629
Hin6I GCGC 2 cut(s) 81, 291
HinP1I GCGC 2 cut(s) 81, 291
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HinfI GANTC 1 cut(s) 230
HpaII CCGG 8 cut(s) 93, 104, 162, 225, 237, 276, 314, 389
HphI GGTGA 3 cut(s) 28, 174, 556
Hpy166II GTNNAC 2 cut(s) 380, 488
Hpy188I TCNGA 2 cut(s) 145, 531
Hpy188III TCNNGA 3 cut(s) 303, 446, 632
Hpy8I GTNNAC 2 cut(s) 380, 488
Hpy99I CGWCG 2 cut(s) 135, 224
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 6 cut(s) 7, 54, 188, 194, 205, 419
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 78, 89, 285, 319, 328
HpyF3I CTNAG 3 cut(s) 528, 556, 714
HpySE526I ACGT 1 cut(s) 133
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 3 cut(s) 398, 578, 629
HspAI GCGC 2 cut(s) 81, 291
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 3 cut(s) 305, 448, 531
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 430, 473
Lsp1109I GCAGC 4 cut(s) 90, 185, 217, 686
LweI GCATC 1 cut(s) 277
MaeI CTAG 3 cut(s) 501, 632, 663
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 611
MalI GATC 3 cut(s) 307, 450, 533
MbiI CCGCTC 1 cut(s) 404
MboI GATC 3 cut(s) 305, 448, 531
MboII GAAGA 3 cut(s) 114, 329, 636
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 5 cut(s) 34, 341, 372, 436, 441
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 672
MreI CGCCGGCG 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 3 cut(s) 345, 461, 618
MspI CCGG 8 cut(s) 93, 104, 162, 225, 237, 276, 314, 389
MspR9I CCNGG 2 cut(s) 66, 390
MvaI CCWGG 1 cut(s) 66
MvnI CGCG 2 cut(s) 83, 288
MwoI GCNNNNNNNGC 6 cut(s) 75, 78, 89, 285, 319, 328
NaeI GCCGGC 1 cut(s) 226
NciI CCSGG 1 cut(s) 390
NdeII GATC 3 cut(s) 305, 448, 531
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 3 cut(s) 398, 578, 629
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 1 cut(s) 578
PaqCI CACCTGC 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 226
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PsiI TTATAA 1 cut(s) 695
Psp6I CCWGG 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 239
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 448
PvuI CGATCG 1 cut(s) 308
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
Rsr2I CGGWCCG 1 cut(s) 239
RsrII CGGWCCG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 3 cut(s) 345, 461, 618
Sau3AI GATC 3 cut(s) 305, 448, 531
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 66, 390
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 2 cut(s) 186, 669
SgrAI CRCCGGYG 1 cut(s) 224
SinI GGWCC 1 cut(s) 239
Sse9I AATT 5 cut(s) 34, 341, 372, 436, 441
SspI AATATT 1 cut(s) 459
SspMI CTAG 3 cut(s) 501, 632, 663
StyD4I CCNGG 2 cut(s) 64, 388
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 136
TaqI TCGA 4 cut(s) 137, 304, 308, 520
TasI AATT 5 cut(s) 34, 341, 372, 436, 441
TauI GCSGC 6 cut(s) 61, 72, 75, 78, 291, 407
Tru1I TTAA 3 cut(s) 345, 461, 618
Tru9I TTAA 3 cut(s) 345, 461, 618
TscAI CASTG 1 cut(s) 483
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 4 cut(s) 78, 173, 205, 674
Tsp45I GTSAC 1 cut(s) 611
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 2 cut(s) 34, 341
XbaI TCTAGA 1 cut(s) 631
XceI RCATGY 1 cut(s) 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 3 cut(s) 501, 632, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.