Rmu_sc0009535.1_g000002

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009535.1
OG0022594
Physical Location & Seq
Forward (+)
14507 .. 16191
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009535.1_g000002.1.cds

Sequence Viewer

Length: 1038 bp
atgctgatgtggggaaaagtgttagagcttgatttcttaagtgagcataaagcttgtaattcagctaattgggtgaatggtgatggagataatgaggaagagtttcctgaggagatcaagcgttttcgtggtatgattgcatccgcggatctcactaagccccatacttggttcccattgctcggtcttcacacggggaaagaaaagaaatttgttccattatcaaatcatgcttcttgtacagtggaattggtgtcaactaacgaaatgtatgatgttgctgtaattgatgaaattcagatgatggcagacccatgtagaggttttgcgtggacacgagcattacttgggttaaaggctgatgagatacatttgtgtggagatccaagcattgaatattgttcgaaagatctgttcaaagaccggagagacgtgtttgaggttaaagttgctattgaaaaccataccaaccatcgctgttgtgttatttatggtgccttaccaccggaaactcacagacagcaagcaaatttatttaatgatcaagttaatgaatttgatgtgcttgtttctactgatgtggtgggaatggcatctcaagtgaagcagattgctggaagagcgggtcggagaggaagcatctatccagatggacttactaccacattgaatttagatgatctggattacttgatcgagtgtctaaagcaaccttttgatgaagttaagaaagtgggacttttcctttctactagcaggttaagctatttgcaggccaactttctaatgttacattctgccagcttcatgacaaatttgaacctccctgtcagtattggtatgggcataccgaggagggtttctgctcataacaataaagaactcttggatcttgagactaagcatcaagtgttgtcaatgtatatgtggttgtcacaccacttcaaggaagaaacttttccttatgtcaagaaggctgaggcaatggctacagatattgctgaattgttgggtcagtccctggccagtgctaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

345

Amino Acids

38.92

Weight (kDa)

5.46

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0342501
rosa_multiflora Rmu_sc0009535.1_g000002
rosa_roxburghii Rroxscaffold_4G00313070
rosa_samantha Rh5BG052000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 494
AccBSI CCGCTC 1 cut(s) 623
AccII CGCG 1 cut(s) 146
AciI CCGC 3 cut(s) 144, 146, 623
AclWI GGATC 3 cut(s) 156, 377, 897
AcoI YGGCCR 1 cut(s) 1023
AcsI RAATTY 6 cut(s) 209, 294, 529, 554, 670, 814
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 4 cut(s) 168, 182, 320, 946
AflII CTTAAG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 6 cut(s) 395, 418, 458, 670, 820, 946
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 1 cut(s) 1020
AluBI AGCT 5 cut(s) 28, 53, 65, 765, 804
AluI AGCT 5 cut(s) 28, 53, 65, 765, 804
Alw26I GTCTC 2 cut(s) 423, 890
AlwI GGATC 3 cut(s) 156, 377, 897
AlwNI CAGNNNCTG 1 cut(s) 1021
AoxI GGCC 2 cut(s) 774, 1023
ApoI RAATTY 6 cut(s) 209, 294, 529, 554, 670, 814
Asp700I GAANNNNTTC 2 cut(s) 102, 957
AsuHPI GGTGA 2 cut(s) 85, 92
AsuII TTCGAA 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 108
BaeI ACNNNNGTAYC 2 cut(s) 359, 392
BalI TGGCCA 1 cut(s) 1025
BanI GGYRCC 1 cut(s) 494
BauI CACGAG 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 179
BbvCI CCTCAGC 1 cut(s) 978
BccI CCATC 4 cut(s) 77, 298, 480, 644
BciT130I CCWGG 1 cut(s) 1022
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 2 cut(s) 423, 890
BfaI CTAG 2 cut(s) 753, 1036
BfmI CTRYAG 1 cut(s) 990
BfrI CTTAAG 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 747
BglII AGATCT 1 cut(s) 409
Bme1390I CCNGG 1 cut(s) 1022
BmgBI CACGTC 1 cut(s) 433
BmiI GGNNCC 2 cut(s) 173, 496
BmrFI CCNGG 1 cut(s) 1022
BmsI GCATC 4 cut(s) 149, 602, 648, 913
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 2 cut(s) 582, 914
BsaJI CCNNGG 3 cut(s) 144, 851, 1020
BsaWI WCCGGW 2 cut(s) 423, 505
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 182, 320, 946
Bse1I ACTGG 1 cut(s) 1026
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 2 cut(s) 176, 990
BseBI CCWGG 1 cut(s) 1022
BseDI CCNNGG 3 cut(s) 144, 851, 1020
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 4 cut(s) 168, 182, 320, 946
BseMI GCAATG 2 cut(s) 176, 990
BseMII CTCAG 2 cut(s) 99, 969
BseNI ACTGG 1 cut(s) 1026
BseRI GAGGAG 2 cut(s) 125, 868
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 2 cut(s) 776, 1025
BshNI GGYRCC 1 cut(s) 494
BsiSI CCGG 2 cut(s) 424, 506
BslFI GGGAC 2 cut(s) 750, 1003
BslI CCNNNNNNNGG 4 cut(s) 168, 182, 320, 946
BsmAI GTCTC 2 cut(s) 423, 890
BsmBI CGTCTC 1 cut(s) 423
BsmFI GGGAC 2 cut(s) 750, 1003
BsnI GGCC 2 cut(s) 776, 1025
Bsp119I TTCGAA 1 cut(s) 404
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 8 cut(s) 114, 148, 382, 409, 541, 679, 693, 889
BspACI CCGC 3 cut(s) 144, 146, 623
BspANI GGCC 2 cut(s) 776, 1025
BspCNI CTCAG 2 cut(s) 100, 970
BspFNI CGCG 1 cut(s) 146
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 2 cut(s) 173, 496
BspMI ACCTGC 1 cut(s) 747
BspPI GGATC 3 cut(s) 156, 377, 897
BspQI GCTCTTC 1 cut(s) 613
BspT104I TTCGAA 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 494
BspTI CTTAAG 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 176, 990
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 1 cut(s) 1026
BssECI CCNNGG 3 cut(s) 144, 851, 1020
BssMI GATC 8 cut(s) 114, 148, 382, 409, 541, 679, 693, 889
BssSI CACGAG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 1022
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 93, 613
BstAFI CTTAAG 1 cut(s) 37
BstAUI TGTACA 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 525, 774, 802
BstDEI CTNAG 4 cut(s) 108, 156, 900, 978
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 8 cut(s) 117, 151, 385, 412, 544, 682, 696, 892
BstMAI GTCTC 2 cut(s) 423, 890
BstMBI GATC 8 cut(s) 114, 148, 382, 409, 541, 679, 693, 889
BstMWI GCNNNNNNNGC 2 cut(s) 620, 762
BstNI CCWGG 1 cut(s) 1022
BstSCI CCNGG 1 cut(s) 1020
BstSFI CTRYAG 1 cut(s) 990
BstUI CGCG 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 4 cut(s) 148, 382, 409, 889
BstYI RGATCY 4 cut(s) 148, 382, 409, 889
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 776, 1025
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 458
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 249, 1033
BveI ACCTGC 1 cut(s) 747
Cac8I GCNNGC 3 cut(s) 525, 774, 802
CaiI CAGNNNCTG 1 cut(s) 1021
CciI TCATGA 1 cut(s) 807
Cfr42I CCGCGG 1 cut(s) 147
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 230, 315, 808
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 4 cut(s) 108, 156, 900, 978
DpnI GATC 8 cut(s) 116, 150, 384, 411, 543, 681, 695, 891
DpnII GATC 8 cut(s) 114, 148, 382, 409, 541, 679, 693, 889
EaeI YGGCCR 1 cut(s) 1023
Eam1104I CTCTTC 2 cut(s) 93, 613
EarI CTCTTC 2 cut(s) 93, 613
Eco81I CCTNAGG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 1020
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 3 cut(s) 233, 318, 811
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 2 cut(s) 750, 1003
FatI CATG 3 cut(s) 229, 314, 807
FauI CCCGC 1 cut(s) 616
FbaI TGATCA 1 cut(s) 541
FokI GGATG 1 cut(s) 127
FspBI CTAG 2 cut(s) 753, 1036
HaeIII GGCC 2 cut(s) 776, 1025
HapII CCGG 2 cut(s) 424, 506
Hin1II CATG 3 cut(s) 233, 318, 811
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 51
HpaII CCGG 2 cut(s) 424, 506
HphI GGTGA 2 cut(s) 85, 92
Hpy166II GTNNAC 2 cut(s) 258, 333
Hpy188I TCNGA 2 cut(s) 300, 630
Hpy188III TCNNGA 6 cut(s) 107, 647, 683, 808, 893, 970
Hpy8I GTNNAC 2 cut(s) 258, 333
HpyAV CCTTC 1 cut(s) 967
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 2 cut(s) 140, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 620, 762
HpyF3I CTNAG 4 cut(s) 108, 156, 900, 978
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 3 cut(s) 233, 318, 811
Ksp22I TGATCA 1 cut(s) 541
KspI CCGCGG 1 cut(s) 147
Kzo9I GATC 8 cut(s) 114, 148, 382, 409, 541, 679, 693, 889
LguI GCTCTTC 1 cut(s) 613
LweI GCATC 4 cut(s) 149, 602, 648, 913
MaeI CTAG 2 cut(s) 753, 1036
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 2 cut(s) 789, 933
MalI GATC 8 cut(s) 116, 150, 384, 411, 543, 681, 695, 891
MbiI CCGCTC 1 cut(s) 623
MboI GATC 8 cut(s) 114, 148, 382, 409, 541, 679, 693, 889
MboII GAAGA 4 cut(s) 110, 179, 630, 962
MflI RGATCY 4 cut(s) 148, 382, 409, 889
MlsI TGGCCA 1 cut(s) 1025
MluNI TGGCCA 1 cut(s) 1025
MmeI TCCRAC 1 cut(s) 608
MnlI CCTC 9 cut(s) 88, 103, 314, 433, 626, 833, 846, 849, 973
Mox20I TGGCCA 1 cut(s) 1025
MroXI GAANNNNTTC 2 cut(s) 102, 957
MscI TGGCCA 1 cut(s) 1025
MseI TTAA 7 cut(s) 38, 353, 444, 537, 549, 726, 761
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 1025
MspA1I CMGCKG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 37
MspI CCGG 2 cut(s) 424, 506
MspR9I CCNGG 1 cut(s) 1022
MvaI CCWGG 1 cut(s) 1022
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 620, 762
NdeII GATC 8 cut(s) 114, 148, 382, 409, 541, 679, 693, 889
NlaIII CATG 3 cut(s) 233, 318, 811
NlaIV GGNNCC 2 cut(s) 173, 496
NmuCI GTSAC 1 cut(s) 933
NspV TTCGAA 1 cut(s) 404
PagI TCATGA 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 613
PdmI GAANNNNTTC 2 cut(s) 102, 957
Psp6I CCWGG 1 cut(s) 1020
PspGI CCWGG 1 cut(s) 1020
PspN4I GGNNCC 2 cut(s) 173, 496
PstNI CAGNNNCTG 1 cut(s) 1021
PsuI RGATCY 4 cut(s) 148, 382, 409, 889
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 375
SacII CCGCGG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 613
SaqAI TTAA 7 cut(s) 38, 353, 444, 537, 549, 726, 761
Sau3AI GATC 8 cut(s) 114, 148, 382, 409, 541, 679, 693, 889
ScrFI CCNGG 1 cut(s) 1022
SfaNI GCATC 4 cut(s) 149, 602, 648, 913
SfcI CTRYAG 1 cut(s) 990
Sfr303I CCGCGG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 404
SgrBI CCGCGG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 3 cut(s) 37, 597, 893
SmoI CTYRAG 3 cut(s) 37, 597, 893
SsiI CCGC 3 cut(s) 144, 146, 623
SspI AATATT 1 cut(s) 398
SspMI CTAG 2 cut(s) 753, 1036
StyD4I CCNGG 1 cut(s) 1020
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 404, 696
TaqII GACCGA 1 cut(s) 173
TatI WGTACW 1 cut(s) 239
Tru1I TTAA 7 cut(s) 38, 353, 444, 537, 549, 726, 761
Tru9I TTAA 7 cut(s) 38, 353, 444, 537, 549, 726, 761
TscAI CASTG 2 cut(s) 249, 1033
TseFI GTSAC 1 cut(s) 933
Tsp45I GTSAC 1 cut(s) 933
TspDTI ATGAA 4 cut(s) 306, 567, 735, 796
TspRI CASTG 2 cut(s) 249, 1033
Vha464I CTTAAG 1 cut(s) 37
XapI RAATTY 6 cut(s) 209, 294, 529, 554, 670, 814
XmnI GAANNNNTTC 2 cut(s) 102, 957
XspI CTAG 2 cut(s) 753, 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.