Rroxscaffold_4G00313070

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0022594
Physical Location & Seq
Forward (+)
36245882 .. 36246388
507 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00313070.1

Sequence Viewer

Length: 507 bp
ATGCAGGTCATTGTTTCCTACCGCGCGCGCGTACAAGTTTCAAGACTTCTTCTTCAAGAAGTGTTCGATGATGTTGCCAAGTATGTGGTGGCCCCGGGTCCATCCGATGATGCGATTAAGTTTTTGTTTCCTGTGTTTGTTGAGTACTTGTTTGGAAGAGTTTCCGAGGAGATCAAGCGTTTTATGATCGAGCACAATTATGAGACGTTTAAGCCATTGGTGGTTGAACCAAAAACTCTCTTGGGAGATTTTAAGAATGTTATGTCCGGAGGCTGCGTGGTTGCCTTTTCAAGGAGAGAGATGTTTGAGGTTAAAGTTGCCATTGAAAATACCAACCACCGCTGTTGTGTTATTTATGGTGCCTTACCTCCGGAAACTCGCAGACAGCAAGCAAATTTATTTAATGATGCGGTGGGAATGGGTCTCAATCTCAATATCGGGAGGGTTGTCTTCTGCGGTCTTATAAAGTACAATGGTAAAATGGGTGTAAAATTTACTTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

8.9

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DExH18_N PF23703 15 - 61 1.1e-08 DExH-box ATP-dependent RNA helicase DExH18, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0342501
rosa_multiflora Rmu_sc0009535.1_g000002
rosa_roxburghii Rroxscaffold_4G00313070
rosa_samantha Rh5BG052000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 359
AccII CGCG 4 cut(s) 24, 26, 28, 30
AccIII TCCGGA 2 cut(s) 266, 370
AciI CCGC 4 cut(s) 22, 340, 410, 456
AcsI RAATTY 2 cut(s) 394, 491
AfaI GTAC 3 cut(s) 33, 146, 470
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 5 cut(s) 42, 56, 227, 291, 326
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 197, 428
Ama87I CYCGRG 1 cut(s) 94
Aor13HI TCCGGA 2 cut(s) 266, 370
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 2 cut(s) 394, 491
Asp700I GAANNNNTTC 1 cut(s) 160
AspLEI GCGC 3 cut(s) 26, 28, 30
AspS9I GGNCC 2 cut(s) 91, 98
AsuC2I CCSGG 2 cut(s) 95, 96
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcnI CCSGG 2 cut(s) 95, 96
BcoDI GTCTC 2 cut(s) 197, 428
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 95, 96
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 91, 98
BmiI GGNNCC 3 cut(s) 93, 99, 361
BmrFI CCNGG 2 cut(s) 95, 96
BmsI GCATC 2 cut(s) 100, 397
BpiI GAAGAC 1 cut(s) 442
BpuMI CCSGG 2 cut(s) 95, 96
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 93, 94, 165
BsaWI WCCGGW 2 cut(s) 266, 370
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseAI TCCGGA 2 cut(s) 266, 370
BseDI CCNNGG 3 cut(s) 93, 94, 165
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 291
BsePI GCGCGC 2 cut(s) 24, 26
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 260
Bsh1236I CGCG 4 cut(s) 24, 26, 28, 30
BshFI GGCC 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 3 cut(s) 95, 267, 371
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 197, 428
BsmBI CGTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 2 cut(s) 266, 370
Bsp143I GATC 2 cut(s) 171, 186
BspACI CCGC 4 cut(s) 22, 340, 410, 456
BspANI GGCC 1 cut(s) 92
BspEI TCCGGA 2 cut(s) 266, 370
BspFNI CGCG 4 cut(s) 24, 26, 28, 30
BspLI GGNNCC 3 cut(s) 93, 99, 361
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 93, 94, 165
BssHII GCGCGC 2 cut(s) 24, 26
BssMI GATC 2 cut(s) 171, 186
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 3 cut(s) 26, 28, 390
BstENI CCTNNNNNAGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 4 cut(s) 24, 26, 28, 30
BstHHI GCGC 3 cut(s) 26, 28, 30
BstKTI GATC 2 cut(s) 174, 189
BstMAI GTCTC 2 cut(s) 197, 428
BstMBI GATC 2 cut(s) 171, 186
BstSCI CCNGG 2 cut(s) 93, 94
BstUI CGCG 4 cut(s) 24, 26, 28, 30
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 101
Cac8I GCNNGC 3 cut(s) 26, 28, 390
CfoI GCGC 3 cut(s) 26, 28, 30
Cfr13I GGNCC 2 cut(s) 91, 98
Cfr9I CCCGGG 1 cut(s) 94
Csp6I GTAC 3 cut(s) 32, 145, 469
CspCI CAANNNNNGTGG 2 cut(s) 326, 361
CviJI RGCY 3 cut(s) 92, 214, 273
CviKI_1 RGCY 3 cut(s) 92, 214, 273
CviQI GTAC 3 cut(s) 32, 145, 469
DpnI GATC 2 cut(s) 173, 188
DpnII GATC 2 cut(s) 171, 186
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 197
FaiI YATR 7 cut(s) 84, 185, 201, 263, 357, 464, 505
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 274
GlaI GCGC 3 cut(s) 25, 27, 29
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 92
HapII CCGG 3 cut(s) 95, 267, 371
HhaI GCGC 3 cut(s) 26, 28, 30
Hin6I GCGC 3 cut(s) 24, 26, 28
HinP1I GCGC 3 cut(s) 24, 26, 28
HpaII CCGG 3 cut(s) 95, 267, 371
Hpy188I TCNGA 2 cut(s) 106, 166
Hpy188III TCNNGA 5 cut(s) 42, 56, 267, 371, 439
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 1 cut(s) 206
HspAI GCGC 3 cut(s) 24, 26, 28
Kpn2I TCCGGA 2 cut(s) 266, 370
Kzo9I GATC 2 cut(s) 171, 186
LpnPI CCDG 4 cut(s) 108, 144, 280, 384
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 2 cut(s) 100, 397
MaeII ACGT 1 cut(s) 206
MalI GATC 2 cut(s) 173, 188
MauBI CGCGCGCG 2 cut(s) 24, 26
MboI GATC 2 cut(s) 171, 186
MboII GAAGA 4 cut(s) 41, 44, 168, 442
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 3 cut(s) 196, 394, 491
MnlI CCTC 5 cut(s) 160, 263, 301, 378, 435
MroI TCCGGA 2 cut(s) 266, 370
MroXI GAANNNNTTC 1 cut(s) 160
MseI TTAA 5 cut(s) 117, 210, 252, 312, 402
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 3 cut(s) 95, 267, 371
MspR9I CCNGG 2 cut(s) 95, 96
MvnI CGCG 4 cut(s) 24, 26, 28, 30
NciI CCSGG 2 cut(s) 95, 96
NdeII GATC 2 cut(s) 171, 186
NlaIV GGNNCC 3 cut(s) 93, 99, 361
PauI GCGCGC 2 cut(s) 24, 26
PdmI GAANNNNTTC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 275
PsiI TTATAA 1 cut(s) 464
PspN4I GGNNCC 3 cut(s) 93, 99, 361
PspPI GGNCC 2 cut(s) 91, 98
PteI GCGCGC 2 cut(s) 24, 26
RsaI GTAC 3 cut(s) 33, 146, 470
RsaNI GTAC 3 cut(s) 32, 145, 469
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 5 cut(s) 117, 210, 252, 312, 402
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 2 cut(s) 171, 186
Sau96I GGNCC 2 cut(s) 91, 98
ScaI AGTACT 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 95, 96
SduI GDGCHC 1 cut(s) 195
SetI ASST 4 cut(s) 9, 209, 312, 370
SfaNI GCATC 2 cut(s) 100, 397
SinI GGWCC 1 cut(s) 98
SmaI CCCGGG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 3 cut(s) 196, 394, 491
SsiI CCGC 4 cut(s) 22, 340, 410, 456
StyD4I CCNGG 2 cut(s) 93, 94
TaiI ACGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 66, 189
TasI AATT 3 cut(s) 196, 394, 491
TatI WGTACW 2 cut(s) 144, 468
Tru1I TTAA 5 cut(s) 117, 210, 252, 312, 402
Tru9I TTAA 5 cut(s) 117, 210, 252, 312, 402
TseI GCWGC 1 cut(s) 273
TspMI CCCGGG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 2 cut(s) 394, 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmaI CCCGGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.