Rh5BG052000

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0022594
Physical Location & Seq
Reverse (-)
4125376 .. 4127633
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG052000.1

Sequence Viewer

Length: 339 bp
ATGGACCTCCCGCCTCGCTGCCGCGAAACGTCAGTACACGTTGCAGCACCGTCACCAAAGCTCCCACTTGGATCTGCTCTTGCAATATACATTGGCAGGTCATTGTTTCCTACCGCTGCGTACAAGTTTCAAGACTTCTTCTTCAAGAACTGTTCTGATGATGTTGCCAAGTATGTGGTGGCCCTGGGTCCATCTGATGATGCAGTTAAGTTTTTGATTCCTGTGTTTGTTGAGTACTGTTTGGAAGAGTTTCCTGAGGAGATTAAGCGTTTTATGAGCACCATTATGAGAGGTTTAAGCCATTGGTGGTTGAAGCAAAAACTCCCTGGGAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

112

Amino Acids

12.73

Weight (kDa)

8.48

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DExH18_N PF23703 25 - 91 4.7e-29 DExH-box ATP-dependent RNA helicase DExH18, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0342501
rosa_multiflora Rmu_sc0009535.1_g000002
rosa_roxburghii Rroxscaffold_4G00313070
rosa_samantha Rh5BG052000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 87
AccII CGCG 1 cut(s) 24
AciI CCGC 3 cut(s) 11, 22, 114
AclWI GGATC 1 cut(s) 79
AfaI GTAC 3 cut(s) 36, 122, 236
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 3 cut(s) 131, 145, 313
AjnI CCWGG 2 cut(s) 183, 325
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 281
AlwI GGATC 1 cut(s) 79
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 18, 44, 116
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 3 cut(s) 4, 181, 188
AsuHPI GGTGA 1 cut(s) 45
AvaII GGWCC 2 cut(s) 4, 188
AxyI CCTNAGG 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 3 cut(s) 5, 56, 103
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 185, 327
BfuAI ACCTGC 1 cut(s) 87
BglII AGATCT 1 cut(s) 332
BisI GCNGC 4 cut(s) 19, 22, 45, 117
BlsI GCNGC 4 cut(s) 20, 23, 46, 118
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 2 cut(s) 185, 327
Bme18I GGWCC 2 cut(s) 4, 188
BmgT120I GGNCC 3 cut(s) 4, 181, 188
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 185, 327
BmsI GCATC 1 cut(s) 190
BsaJI CCNNGG 4 cut(s) 183, 184, 325, 326
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse21I CCTNAGG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 185, 327
BseDI CCNNGG 4 cut(s) 183, 184, 325, 326
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 3 cut(s) 5, 56, 103
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 281
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 71, 332
BspACI CCGC 3 cut(s) 11, 22, 114
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 79
BssECI CCNNGG 4 cut(s) 183, 184, 325, 326
BssMI GATC 2 cut(s) 71, 332
Bst2UI CCWGG 2 cut(s) 185, 327
Bst4CI ACNGT 3 cut(s) 51, 152, 239
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 2 cut(s) 74, 335
BstMBI GATC 2 cut(s) 71, 332
BstNI CCWGG 2 cut(s) 185, 327
BstSCI CCNGG 2 cut(s) 183, 325
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 5, 56, 103
BstX2I RGATCY 2 cut(s) 71, 332
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 2 cut(s) 71, 332
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 1 cut(s) 182
BveI ACCTGC 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 4, 181, 188
Csp6I GTAC 3 cut(s) 35, 121, 235
CviJI RGCY 3 cut(s) 61, 182, 300
CviKI_1 RGCY 3 cut(s) 61, 182, 300
CviQI GTAC 3 cut(s) 35, 121, 235
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 73, 334
DpnII GATC 2 cut(s) 71, 332
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 4, 188
Eco81I CCTNAGG 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 183, 325
FaiI YATR 4 cut(s) 88, 174, 275, 287
FauI CCCGC 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 19, 22, 45, 117
Fsp4HI GCNGC 4 cut(s) 19, 22, 45, 117
GluI GCNGC 4 cut(s) 19, 22, 45, 117
HaeIII GGCC 1 cut(s) 182
HinfI GANTC 1 cut(s) 217
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 157, 196
Hpy188III TCNNGA 3 cut(s) 131, 145, 254
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4III ACNGT 3 cut(s) 51, 152, 239
HpyCH4IV ACGT 2 cut(s) 29, 39
HpyCH4V TGCA 3 cut(s) 44, 83, 203
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 29, 39
Kzo9I GATC 2 cut(s) 71, 332
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 6 cut(s) 82, 170, 197, 234, 267, 312
Lsp1109I GCAGC 3 cut(s) 5, 56, 103
LweI GCATC 1 cut(s) 190
MaeII ACGT 2 cut(s) 29, 39
MaeIII GTNAC 1 cut(s) 51
MalI GATC 2 cut(s) 73, 334
MboI GATC 2 cut(s) 71, 332
MboII GAAGA 3 cut(s) 130, 133, 257
MflI RGATCY 2 cut(s) 71, 332
MhlI GDGCHC 1 cut(s) 281
MnlI CCTC 4 cut(s) 17, 24, 250, 284
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 4 cut(s) 207, 264, 296, 337
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 185, 327
MvaI CCWGG 2 cut(s) 185, 327
MvnI CGCG 1 cut(s) 24
NdeII GATC 2 cut(s) 71, 332
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 51
PasI CCCWGGG 2 cut(s) 184, 326
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 4 cut(s) 20, 23, 46, 118
Psp6I CCWGG 2 cut(s) 183, 325
PspGI CCWGG 2 cut(s) 183, 325
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 3 cut(s) 4, 181, 188
PsuI RGATCY 2 cut(s) 71, 332
RsaI GTAC 3 cut(s) 36, 122, 236
RsaNI GTAC 3 cut(s) 35, 121, 235
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 4 cut(s) 207, 264, 296, 337
SatI GCNGC 4 cut(s) 19, 22, 45, 117
Sau3AI GATC 2 cut(s) 71, 332
Sau96I GGNCC 3 cut(s) 4, 181, 188
ScaI AGTACT 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 185, 327
SduI GDGCHC 1 cut(s) 281
SetI ASST 6 cut(s) 9, 32, 42, 63, 101, 295
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 2 cut(s) 4, 188
SmiMI CAYNNNNRTG 1 cut(s) 284
SsiI CCGC 3 cut(s) 11, 22, 114
StyD4I CCNGG 2 cut(s) 183, 325
TaaI ACNGT 3 cut(s) 51, 152, 239
TaiI ACGT 2 cut(s) 32, 42
TatI WGTACW 2 cut(s) 34, 234
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 4 cut(s) 207, 264, 296, 337
Tru9I TTAA 4 cut(s) 207, 264, 296, 337
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 3 cut(s) 18, 44, 116
Tsp45I GTSAC 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 4, 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.