Rmu_sc0010224.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010224.1
OG0023072
Physical Location & Seq
Forward (+)
5843 .. 8814
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010224.1_g000004.1.cds

Sequence Viewer

Length: 612 bp
atggagaaggcgaggttgaaggtcaggcaaggagtgagaactgttgggctgacggaggcagatgtggtggatccggagatgggcgtagggattgtggtggtgatcggtggtggggatggaggtgagattagaattagggttttgatgggattagaagtggggttaagtttggtggatatggatttggaaggtggaggagatgcggtggtcgccagggtcgaggtttctgggtttgggttacaggatgtttacctagagagtgattgccaggttgccattcaggaggttggtgcggatgattttgagttgagtgaaaatgtaaacatcctttcttatatccgaaatagcagtaaacatgttaaggacttgtcttttatgtttgctcctagaactgccaacatgatggctcatagactagctgcttttgcttatgaatccaatgccaatcagtctcgagctcctcccatactcgagcgcctctctcctcactcgaactcaccgctcttgttacctacatcgcctccttcatctacctcctcagcttcatctactgaccctgaccccgaccccaacttcctcctgctttctccgccctcctaccccatcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

203

Amino Acids

21.7

Weight (kDa)

4.56

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023072)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001556.1_g000011 Rmu_sc0004591.1_g000007 Rmu_sc0010224.1_g000004
rosa_roxburghii Rroxscaffold_2G00087670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 502
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 4 cut(s) 203, 293, 500, 590
AclWI GGATC 2 cut(s) 65, 78
AfiI CCNNNNNNNGG 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 2 cut(s) 212, 267
AluBI AGCT 3 cut(s) 419, 458, 542
AluI AGCT 3 cut(s) 419, 458, 542
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 2 cut(s) 65, 78
Ama87I CYCGRG 2 cut(s) 453, 470
Aor13HI TCCGGA 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 112, 134, 489
AvaI CYCGRG 2 cut(s) 453, 470
BamHI GGATCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 460
BbvCI CCTCAGC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 406
BccI CCATC 5 cut(s) 73, 110, 139, 397, 611
BciT130I CCWGG 2 cut(s) 214, 269
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 3 cut(s) 254, 387, 416
BfoI RGCGCY 1 cut(s) 478
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 2 cut(s) 214, 269
BmeT110I CYCGRG 2 cut(s) 453, 470
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 2 cut(s) 214, 269
BmsI GCATC 1 cut(s) 190
BplI GAGNNNNNCTC 2 cut(s) 464, 496
Bpu10I CCTNAGC 1 cut(s) 538
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 4 cut(s) 189, 219, 505, 535
Bsc4I CCNNNNNNNGG 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 2 cut(s) 214, 269
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 4 cut(s) 121, 250, 301, 324
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 552
BseRI GAGGAG 4 cut(s) 210, 450, 474, 526
BseXI GCAGC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 2 cut(s) 453, 470
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 456
BsoBI CYCGRG 2 cut(s) 453, 470
Bsp1286I GDGCHC 1 cut(s) 460
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 2 cut(s) 70, 102
BspACI CCGC 4 cut(s) 203, 293, 500, 590
BspCNI CTCAG 1 cut(s) 551
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 2 cut(s) 65, 78
BsrBI CCGCTC 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 70, 102
Bst2UI CCWGG 2 cut(s) 214, 269
Bst4CI ACNGT 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 538
BstF5I GGATG 4 cut(s) 121, 250, 301, 324
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 2 cut(s) 73, 105
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 2 cut(s) 70, 102
BstMWI GCNNNNNNNGC 3 cut(s) 209, 425, 589
BstNI CCWGG 2 cut(s) 214, 269
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 212, 267
BstV1I GCAGC 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 501
BtsCI GGATG 4 cut(s) 121, 250, 301, 324
CfoI GCGC 1 cut(s) 477
CviAII CATG 2 cut(s) 356, 400
CviJI RGCY 5 cut(s) 49, 407, 419, 458, 542
CviKI_1 RGCY 5 cut(s) 49, 407, 419, 458, 542
DdeI CTNAG 1 cut(s) 538
DpnI GATC 2 cut(s) 72, 104
DpnII GATC 2 cut(s) 70, 102
EciI GGCGGA 1 cut(s) 579
Ecl136II GAGCTC 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 460
Eco53kI GAGCTC 1 cut(s) 458
Eco88I CYCGRG 2 cut(s) 453, 470
EcoICRI GAGCTC 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 212, 267
EcoT38I GRGCYC 1 cut(s) 460
FaeI CATG 2 cut(s) 359, 403
FaiI YATR 8 cut(s) 179, 336, 357, 377, 401, 411, 432, 467
FatI CATG 2 cut(s) 355, 399
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 4 cut(s) 128, 257, 308, 311
FriOI GRGCYC 1 cut(s) 460
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 3 cut(s) 254, 387, 416
GlaI GCGC 1 cut(s) 476
GluI GCNGC 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 478
HapII CCGG 1 cut(s) 74
HhaI GCGC 1 cut(s) 477
Hin1II CATG 2 cut(s) 359, 403
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HinfI GANTC 1 cut(s) 434
HpaII CCGG 1 cut(s) 74
HphI GGTGA 3 cut(s) 112, 134, 489
Hpy166II GTNNAC 3 cut(s) 250, 322, 353
Hpy188I TCNGA 2 cut(s) 341, 611
Hpy188III TCNNGA 3 cut(s) 74, 281, 453
Hpy8I GTNNAC 3 cut(s) 250, 322, 353
HpyAV CCTTC 3 cut(s) 13, 182, 534
HpyCH4III ACNGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 425, 589
HpyF3I CTNAG 1 cut(s) 538
Hsp92II CATG 2 cut(s) 359, 403
HspAI GCGC 1 cut(s) 475
Kpn2I TCCGGA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 70, 102
LmnI GCTCC 2 cut(s) 388, 463
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 190
MaeI CTAG 3 cut(s) 254, 387, 416
MaeIII GTNAC 2 cut(s) 237, 507
MalI GATC 2 cut(s) 72, 104
MbiI CCGCTC 1 cut(s) 502
MboI GATC 2 cut(s) 70, 102
MboII GAAGA 1 cut(s) 598
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 1 cut(s) 132
MroI TCCGGA 1 cut(s) 73
MseI TTAA 2 cut(s) 164, 360
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 214, 269
MvaI CCWGG 2 cut(s) 214, 269
MwoI GCNNNNNNNGC 3 cut(s) 209, 425, 589
NdeII GATC 2 cut(s) 70, 102
NlaIII CATG 2 cut(s) 359, 403
NlaIV GGNNCC 1 cut(s) 72
NspI RCATGY 1 cut(s) 359
PaeR7I CTCGAG 2 cut(s) 453, 470
PciI ACATGT 1 cut(s) 355
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 1 cut(s) 421
PscI ACATGT 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 212, 267
PspGI CCWGG 2 cut(s) 212, 267
PspN4I GGNNCC 1 cut(s) 72
PspXI VCTCGAGB 1 cut(s) 470
PsuI RGATCY 1 cut(s) 70
SacI GAGCTC 1 cut(s) 460
SaqAI TTAA 2 cut(s) 164, 360
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 2 cut(s) 70, 102
ScrFI CCNGG 2 cut(s) 214, 269
SduI GDGCHC 1 cut(s) 460
SfaNI GCATC 1 cut(s) 190
Sfr274I CTCGAG 2 cut(s) 453, 470
SlaI CTCGAG 2 cut(s) 453, 470
SmlI CTYRAG 2 cut(s) 453, 470
SmoI CTYRAG 2 cut(s) 453, 470
Sse9I AATT 1 cut(s) 132
SsiI CCGC 4 cut(s) 203, 293, 500, 590
SspMI CTAG 3 cut(s) 254, 387, 416
SstI GAGCTC 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 212, 267
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 4 cut(s) 219, 454, 471, 491
TasI AATT 1 cut(s) 132
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 2 cut(s) 164, 360
Tru9I TTAA 2 cut(s) 164, 360
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 3 cut(s) 447, 516, 534
TspGWI ACGGA 1 cut(s) 68
XceI RCATGY 1 cut(s) 359
XhoI CTCGAG 2 cut(s) 453, 470
XspI CTAG 3 cut(s) 254, 387, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.