Rroxscaffold_2G00087670

acyl-activating enzyme

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
9676893 .. 9677147
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087670.1

Sequence Viewer

Length: 255 bp
ATGTTGGTCATACGTGACGTTAAACCGAGTGGAAGCCGAGTGGAATCAATTTCCGTGACCGAGAAGGCGAGGTTGAAGGCCGTGCAAGGAGTGAGAACTGTTGGGCCGACGGAGGCGGATGTGGTGGATCCGAAGATGGGCGTAGGGATTGGGGTGGTGATCGGTGGTGGGGATGGGGCTAGGATTAGAAGTGGGGTTAAGTTTCGTGGGTATGGATTTGGAAGGTGGAGGAGATGCAGTGGTCGTCGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

8.91

Weight (kDa)

11.36

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023072)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AclWI GGATC 2 cut(s) 122, 135
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 76
AlwI GGATC 2 cut(s) 122, 135
AoxI GGCC 2 cut(s) 78, 104
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 169
BamHI GGATCC 1 cut(s) 127
BccI CCATC 2 cut(s) 130, 167
BceAI ACGGC 1 cut(s) 65
BfaI CTAG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 129
BmsI GCATC 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 124, 178
BseLI CCNNNNNNNGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 244
BshFI GGCC 2 cut(s) 80, 106
BslI CCNNNNNNNGG 1 cut(s) 137
BsnI GGCC 2 cut(s) 80, 106
Bsp143I GATC 2 cut(s) 127, 159
BspACI CCGC 1 cut(s) 116
BspANI GGCC 2 cut(s) 80, 106
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 2 cut(s) 122, 135
BssMI GATC 2 cut(s) 127, 159
Bst4CI ACNGT 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 14
BstF5I GGATG 2 cut(s) 124, 178
BstKTI GATC 2 cut(s) 130, 162
BstMBI GATC 2 cut(s) 127, 159
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 2 cut(s) 80, 106
BtsCI GGATG 2 cut(s) 124, 178
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 104
CviJI RGCY 4 cut(s) 36, 80, 106, 179
CviKI_1 RGCY 4 cut(s) 36, 80, 106, 179
DpnI GATC 2 cut(s) 129, 161
DpnII GATC 2 cut(s) 127, 159
EciI GGCGGA 1 cut(s) 131
FaiI YATR 2 cut(s) 11, 213
FokI GGATG 2 cut(s) 131, 185
FspBI CTAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 80, 106
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 132
Hpy99I CGWCG 2 cut(s) 112, 249
HpyAV CCTTC 3 cut(s) 58, 70, 216
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 13, 18
HpyCH4V TGCA 2 cut(s) 85, 237
HpySE526I ACGT 2 cut(s) 13, 18
Kzo9I GATC 2 cut(s) 127, 159
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 13, 18
MaeIII GTNAC 2 cut(s) 14, 55
MalI GATC 2 cut(s) 129, 161
MboI GATC 2 cut(s) 127, 159
MboII GAAGA 1 cut(s) 145
MflI RGATCY 1 cut(s) 127
MluCI AATT 1 cut(s) 48
MnlI CCTC 3 cut(s) 63, 106, 222
MseI TTAA 2 cut(s) 21, 198
NdeII GATC 2 cut(s) 127, 159
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 14, 55
PfeI GAWTC 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 127
SaqAI TTAA 2 cut(s) 21, 198
Sau3AI GATC 2 cut(s) 127, 159
Sau96I GGNCC 1 cut(s) 104
SetI ASST 4 cut(s) 16, 21, 74, 227
SfaNI GCATC 1 cut(s) 224
Sse9I AATT 1 cut(s) 48
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 16, 21
TaqII GACCGA 1 cut(s) 74
TasI AATT 1 cut(s) 48
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 21, 198
Tru9I TTAA 2 cut(s) 21, 198
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 14, 55
Tsp45I GTSAC 2 cut(s) 14, 55
TspGWI ACGGA 2 cut(s) 43, 125
TspRI CASTG 1 cut(s) 244
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.