Rmu_sc0011912.1_g000001

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011912.1
OG0019967
Physical Location & Seq
Reverse (-)
5929 .. 6564
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011912.1_g000001.1.cds

Sequence Viewer

Length: 636 bp
atgatttcccctctcttcttcgtattttctctcattctctcttcttcctatgcttctcatgtgcaagacttctgtgttgcagactacacagcccctcaaggctttacagggtacgcttgcaaagaccctgccaaggtcacagtagacgatttcgtcttctccggcctaaaagtccccagtgacacctcgaacattaacaaatctggattcacagctgccgttgcccctgtatttcctgctctcaacggcctaggcgtttcggtggccctagcaaccctggtggttgatggagttagtccgcttcacagccaccgcggagctacagaagtaatagtcatcttagaaggaagtgacatagtcgccgggttcattgcctcgagtaacaaagtttatacaaagactctgaacaagggtgatgctattgtttttccacaagggttatatcacttcttttggaataagggtaaaacacctgccagtatatttgttagcttcagtagcgaaaaccccggcgttcaggttctggagaatgcactgttccaaagcgatttccctaccgaaatcatagccaagactactttacttgacgttgctcagattaagaaacttaagggtgtttttaatggcactaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

211

Amino Acids

22.44

Weight (kDa)

6.04

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019967)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0190841
rosa_multiflora Rmu_sc0011912.1_g000001
rosa_rugosa Rorug06G0507500
rosa_samantha Rh7AG114200 Rh7CG119500 Rh7DG118000
rosa_wichuraiana Rw7G009960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 481
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 481
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 315
AciI CCGC 3 cut(s) 299, 313, 315
AcuI CTGAAG 1 cut(s) 478
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 133
AflII CTTAAG 1 cut(s) 608
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 3 cut(s) 215, 320, 492
AluI AGCT 3 cut(s) 215, 320, 492
AlwNI CAGNNNCTG 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 3 cut(s) 163, 247, 264
ApeKI GCWGC 1 cut(s) 215
AspA2I CCTAGG 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 2 cut(s) 364, 510
AsuHPI GGTGA 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 376
AvrII CCTAGG 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 281
BceAI ACGGC 2 cut(s) 203, 262
BciT130I CCWGG 1 cut(s) 278
BcnI CCSGG 2 cut(s) 364, 510
BfaI CTAG 2 cut(s) 251, 269
BfmI CTRYAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 608
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 1 cut(s) 216
BlnI CCTAGG 1 cut(s) 250
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 3 cut(s) 278, 364, 510
BmeT110I CYCGRG 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 265
BmrFI CCNGG 3 cut(s) 278, 364, 510
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 2 cut(s) 364, 510
BsaJI CCNNGG 5 cut(s) 132, 250, 276, 313, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 177, 477
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 5 cut(s) 132, 250, 276, 313, 508
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 2 cut(s) 177, 477
BseXI GCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 165, 249, 266
BsiHKCI CYCGRG 1 cut(s) 376
BsiSI CCGG 3 cut(s) 162, 363, 510
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 3 cut(s) 165, 249, 266
BsoBI CYCGRG 1 cut(s) 376
BspACI CCGC 3 cut(s) 299, 313, 315
BspANI GGCC 3 cut(s) 165, 249, 266
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 2 cut(s) 177, 477
BssECI CCNNGG 5 cut(s) 132, 250, 276, 313, 508
BssT1I CCWWGG 2 cut(s) 132, 250
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 142, 537
Bst6I CTCTTC 2 cut(s) 20, 46
BstAFI CTTAAG 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 340, 594
BstDSI CCRYGG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 221, 498
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 276, 362, 508
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 148
BsuRI GGCC 3 cut(s) 165, 249, 266
BtgI CCRYGG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 184, 533
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 523
Cfr13I GGNCC 1 cut(s) 265
Cfr42I CCGCGG 1 cut(s) 316
Csp6I GTAC 1 cut(s) 112
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 1 cut(s) 59
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 340, 594
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 20, 46
EarI CTCTTC 2 cut(s) 20, 46
Eco130I CCWWGG 2 cut(s) 132, 250
Eco57I CTGAAG 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 2 cut(s) 132, 250
ErhI CCWWGG 2 cut(s) 132, 250
FaeI CATG 1 cut(s) 62
FaiI YATR 7 cut(s) 51, 60, 356, 393, 442, 482, 566
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 58
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 251, 269
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 3 cut(s) 165, 249, 266
HapII CCGG 3 cut(s) 162, 363, 510
Hin1II CATG 1 cut(s) 62
HinfI GANTC 2 cut(s) 207, 400
HpaII CCGG 3 cut(s) 162, 363, 510
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 405, 597
Hpy188III TCNNGA 2 cut(s) 204, 524
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 2 cut(s) 142, 537
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 4 cut(s) 64, 80, 120, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 498
HpyF3I CTNAG 2 cut(s) 340, 594
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 1 cut(s) 62
KspI CCGCGG 1 cut(s) 316
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 406
MaeI CTAG 2 cut(s) 251, 269
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 4 cut(s) 136, 179, 350, 380
MboII GAAGA 5 cut(s) 7, 10, 33, 36, 148
MluCI AATT 1 cut(s) 631
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 4 cut(s) 21, 105, 196, 385
MseI TTAA 4 cut(s) 195, 600, 609, 621
MspA1I CMGCKG 2 cut(s) 215, 315
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 3 cut(s) 162, 363, 510
MspR9I CCNGG 3 cut(s) 278, 364, 510
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 221, 498
NciI CCSGG 2 cut(s) 364, 510
NlaIII CATG 1 cut(s) 62
NmuCI GTSAC 3 cut(s) 136, 179, 350
PaeR7I CTCGAG 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 207
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspPI GGNCC 1 cut(s) 265
PspXI VCTCGAGB 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 523
PsyI GACNNNGTC 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacII CCGCGG 1 cut(s) 316
SaqAI TTAA 4 cut(s) 195, 600, 609, 621
SatI GCNGC 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 3 cut(s) 278, 364, 510
SetI ASST 8 cut(s) 138, 188, 217, 322, 475, 494, 522, 591
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 376
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 376
SmlI CTYRAG 3 cut(s) 96, 376, 608
SmoI CTYRAG 3 cut(s) 96, 376, 608
Sse9I AATT 1 cut(s) 631
SsiI CCGC 3 cut(s) 299, 313, 315
SspMI CTAG 2 cut(s) 251, 269
StyD4I CCNGG 3 cut(s) 276, 362, 508
StyI CCWWGG 2 cut(s) 132, 250
TaaI ACNGT 2 cut(s) 142, 537
TaiI ACGT 1 cut(s) 591
TaqI TCGA 2 cut(s) 188, 377
TasI AATT 1 cut(s) 631
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 4 cut(s) 195, 600, 609, 621
Tru9I TTAA 4 cut(s) 195, 600, 609, 621
TscAI CASTG 2 cut(s) 184, 540
TseFI GTSAC 3 cut(s) 136, 179, 350
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 3 cut(s) 136, 179, 350
TspDTI ATGAA 1 cut(s) 358
TspRI CASTG 2 cut(s) 184, 540
Tth111I GACNNNGTC 1 cut(s) 356
Vha464I CTTAAG 1 cut(s) 608
XhoI CTCGAG 1 cut(s) 376
XmaJI CCTAGG 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 2 cut(s) 251, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.