Rh7CG119500

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019967
Physical Location & Seq
Reverse (-)
9133336 .. 9134332
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG119500.1

Sequence Viewer

Length: 513 bp
ATGAATGGGAGGGGATCTCATACCATACTCGTCGAAAATTTATCCCTAACTCAGGCCAATGTTTCCAACATGCAAATCACTCATTCAAAGTCTGCCGTTGCCCCTGTATTTCCTGCTCTCAACGGCCTAGGCGTTTCGGTGGCCCTAGCAACCCTGGAGGTTGATGGAGTTAGTCCGCTTCACAGCCACCGCGGAGCTACAGAAGTAATAGTCATCTTAGAAGGAAGTAACATAGTCGCCGGGTTCATTGCCTCGAGTAACAAAGTTTATACAAAGACTCTGAACAAGGGTGATGCTATTGTTTTTCCACAAGGGTTATATCACTTCTTTTGGAATAAGGGTAAAACACCTGCCAGTATATTTGTTAGCTTCAGTAGCGAAAACCCCGGCGTTCAGGTTCTGGATAATGCACTGTTCCAAAGCGATTTCCCTACCGAAATCATAGCCAAGACTACTTCACTTGACGTTGCTCAGATTAAGAAACTTAAGGGTGTTTTTAATGGCACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

170

Amino Acids

18.04

Weight (kDa)

8.04

Isoelectric Point (pI)

25.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 17 - 159 3e-30 Cupin
Cupin_2 PF07883 49 - 122 3.6e-10 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019967)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0190841
rosa_multiflora Rmu_sc0011912.1_g000001
rosa_rugosa Rorug06G0507500
rosa_samantha Rh7AG114200 Rh7CG119500 Rh7DG118000
rosa_wichuraiana Rw7G009960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 358
Acc36I ACCTGC 1 cut(s) 358
AccII CGCG 1 cut(s) 192
AciI CCGC 3 cut(s) 176, 190, 192
AclWI GGATC 1 cut(s) 22
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 52
AflII CTTAAG 1 cut(s) 485
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 2 cut(s) 197, 369
AluI AGCT 2 cut(s) 197, 369
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 3 cut(s) 54, 124, 141
ApoI RAATTY 1 cut(s) 37
AspA2I CCTAGG 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 2 cut(s) 241, 387
AsuHPI GGTGA 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 253
AvrII CCTAGG 1 cut(s) 127
BccI CCATC 1 cut(s) 158
BceAI ACGGC 2 cut(s) 80, 139
BciT130I CCWGG 1 cut(s) 155
BcnI CCSGG 2 cut(s) 241, 387
BfaI CTAG 2 cut(s) 128, 146
BfmI CTRYAG 1 cut(s) 198
BfrI CTTAAG 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 358
BlnI CCTAGG 1 cut(s) 127
Bme1390I CCNGG 3 cut(s) 155, 241, 387
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 3 cut(s) 155, 241, 387
BmsI GCATC 1 cut(s) 283
BplI GAGNNNNNCTC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 241, 387
BsaJI CCNNGG 4 cut(s) 127, 153, 190, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 4 cut(s) 127, 153, 190, 385
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 65, 485
BseNI ACTGG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 56, 126, 143
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 2 cut(s) 240, 387
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 3 cut(s) 56, 126, 143
BsoBI CYCGRG 1 cut(s) 253
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 3 cut(s) 176, 190, 192
BspANI GGCC 3 cut(s) 56, 126, 143
BspCNI CTCAG 2 cut(s) 64, 484
BspFNI CGCG 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 22
BspTI CTTAAG 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 4 cut(s) 127, 153, 190, 385
BssMI GATC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 414
BstAFI CTTAAG 1 cut(s) 485
BstDEI CTNAG 3 cut(s) 51, 217, 471
BstDSI CCRYGG 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 153, 239, 385
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 3 cut(s) 56, 126, 143
BtgI CCRYGG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 410
BveI ACCTGC 1 cut(s) 358
CaiI CAGNNNCTG 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 142
Cfr42I CCGCGG 1 cut(s) 193
CviAII CATG 1 cut(s) 70
CviJI RGCY 7 cut(s) 56, 126, 143, 186, 197, 369, 446
CviKI_1 RGCY 7 cut(s) 56, 126, 143, 186, 197, 369, 446
DdeI CTNAG 3 cut(s) 51, 217, 471
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 1 cut(s) 73
FaiI YATR 8 cut(s) 21, 26, 71, 233, 270, 319, 359, 443
FatI CATG 1 cut(s) 69
FspBI CTAG 2 cut(s) 128, 146
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 3 cut(s) 56, 126, 143
HapII CCGG 2 cut(s) 240, 387
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 277
HpaII CCGG 2 cut(s) 240, 387
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 282, 474
Hpy188III TCNNGA 1 cut(s) 401
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 2 cut(s) 73, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 3 cut(s) 51, 217, 471
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 1 cut(s) 73
KspI CCGCGG 1 cut(s) 193
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 194
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 128, 146
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 227, 257
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MflI RGATCY 1 cut(s) 14
MluCI AATT 2 cut(s) 37, 508
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 3 cut(s) 3, 151, 262
MseI TTAA 3 cut(s) 477, 486, 498
MspA1I CMGCKG 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 2 cut(s) 240, 387
MspR9I CCNGG 3 cut(s) 155, 241, 387
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 375
NciI CCSGG 2 cut(s) 241, 387
NdeII GATC 1 cut(s) 14
NlaIII CATG 1 cut(s) 73
NspI RCATGY 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 14
SacII CCGCGG 1 cut(s) 193
SaqAI TTAA 3 cut(s) 477, 486, 498
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 155, 241, 387
SetI ASST 6 cut(s) 162, 199, 352, 371, 399, 468
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 253
Sfr303I CCGCGG 1 cut(s) 193
SgrBI CCGCGG 1 cut(s) 193
SlaI CTCGAG 1 cut(s) 253
SmlI CTYRAG 2 cut(s) 253, 485
SmoI CTYRAG 2 cut(s) 253, 485
Sse9I AATT 2 cut(s) 37, 508
SsiI CCGC 3 cut(s) 176, 190, 192
SspMI CTAG 2 cut(s) 128, 146
StyD4I CCNGG 3 cut(s) 153, 239, 385
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 414
TaiI ACGT 1 cut(s) 468
TaqI TCGA 2 cut(s) 33, 254
TasI AATT 2 cut(s) 37, 508
Tru1I TTAA 3 cut(s) 477, 486, 498
Tru9I TTAA 3 cut(s) 477, 486, 498
TscAI CASTG 1 cut(s) 417
TspDTI ATGAA 2 cut(s) 17, 235
TspRI CASTG 1 cut(s) 417
Vha464I CTTAAG 1 cut(s) 485
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 253
XmaJI CCTAGG 1 cut(s) 127
XspI CTAG 2 cut(s) 128, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.