Rw7G009960

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0019967
Physical Location & Seq
Reverse (-)
9204259 .. 9204845
587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009960.1

Sequence Viewer

Length: 483 bp
ATGCTTCTCATGTGCAAGACTTCTGTGTTGCAGACTACACAGCCCCTCAAGGCTTTGCAGGCTGCCGTTGCCCCTGTATTTCCTGCTCTCAACGGCCTAGGCGTTTCGGTGGCCCTAGCAACCCTGGCGGTTGATGGAGTTAGTCCGCTTCACAGCCACCGCGGAGCTACAGAAGTAATAGTCATCTTAGAAGGAAGTGACATAGTCGCCGGGTTCATTGCCTCGAGTAACAAAGTTTATACAAAGACTCTGAACAAGGGTGATGCTATTGTTTTTCCACAAGGGTTATATCACTTCTTTTGGAATAAGGGTAAAACACCTGCCAGTATATTTGTTAGCTTCAGTAGCGAAAACCCCGGCGTTCAGGTTCTGGAGAATGCACTGTTCCAAAGCGATTTCCCTACCGAAATCATAGCTAAGACTACTTTACTTGACGTTGCTCAGATTAAGAAACTTAAGGGTGTTTTTAATGGCACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

160

Amino Acids

16.97

Weight (kDa)

8.74

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 26 - 149 2.3e-29 Cupin
Cupin_2 PF07883 39 - 112 3.5e-10 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019967)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0190841
rosa_multiflora Rmu_sc0011912.1_g000001
rosa_rugosa Rorug06G0507500
rosa_samantha Rh7AG114200 Rh7CG119500 Rh7DG118000
rosa_wichuraiana Rw7G009960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 328
AccII CGCG 1 cut(s) 162
AciI CCGC 4 cut(s) 128, 146, 160, 162
AcuI CTGAAG 1 cut(s) 325
AflII CTTAAG 1 cut(s) 455
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 3 cut(s) 167, 339, 416
AluI AGCT 3 cut(s) 167, 339, 416
AlwNI CAGNNNCTG 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 2 cut(s) 94, 111
ApeKI GCWGC 1 cut(s) 62
AspA2I CCTAGG 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 211, 357
AsuHPI GGTGA 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 223
AvrII CCTAGG 1 cut(s) 97
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 128
BceAI ACGGC 2 cut(s) 50, 109
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 2 cut(s) 211, 357
BfaI CTAG 2 cut(s) 98, 116
BfmI CTRYAG 1 cut(s) 168
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 63
BlnI CCTAGG 1 cut(s) 97
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 3 cut(s) 125, 211, 357
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 112
BmrFI CCNGG 3 cut(s) 125, 211, 357
BmsI GCATC 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 211, 357
BsaJI CCNNGG 4 cut(s) 97, 123, 160, 355
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 4 cut(s) 97, 123, 160, 355
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 96, 113
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 2 cut(s) 210, 357
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 96, 113
BsoBI CYCGRG 1 cut(s) 223
BspACI CCGC 4 cut(s) 128, 146, 160, 162
BspANI GGCC 2 cut(s) 96, 113
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 4 cut(s) 97, 123, 160, 355
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 384
BstAFI CTTAAG 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 187, 417, 441
BstDSI CCRYGG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 59, 68, 125, 345
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 123, 209, 355
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 96, 113
BtgI CCRYGG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 380
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 112
Cfr42I CCGCGG 1 cut(s) 163
CviAII CATG 1 cut(s) 10
CviJI RGCY 9 cut(s) 43, 53, 62, 96, 113, 156, 167, 339, 416
CviKI_1 RGCY 9 cut(s) 43, 53, 62, 96, 113, 156, 167, 339, 416
DdeI CTNAG 3 cut(s) 187, 417, 441
Eco130I CCWWGG 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 325
Eco88I CYCGRG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 13
FaiI YATR 6 cut(s) 11, 203, 240, 289, 329, 413
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 98, 116
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 392
HaeIII GGCC 2 cut(s) 96, 113
HapII CCGG 2 cut(s) 210, 357
Hin1II CATG 1 cut(s) 13
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 210, 357
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 252, 444
Hpy188III TCNNGA 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 4 cut(s) 15, 31, 58, 380
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 68, 125, 345
HpyF3I CTNAG 3 cut(s) 187, 417, 441
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 1 cut(s) 13
KspI CCGCGG 1 cut(s) 163
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 98, 116
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 197, 227
MluCI AATT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 2 cut(s) 56, 232
MseI TTAA 3 cut(s) 447, 456, 468
MspA1I CMGCKG 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 2 cut(s) 210, 357
MspR9I CCNGG 3 cut(s) 125, 211, 357
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 4 cut(s) 59, 68, 125, 345
NciI CCSGG 2 cut(s) 211, 357
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 382
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspPI GGNCC 1 cut(s) 112
PspXI VCTCGAGB 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 370
PsyI GACNNNGTC 1 cut(s) 203
SacII CCGCGG 1 cut(s) 163
SaqAI TTAA 3 cut(s) 447, 456, 468
SatI GCNGC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 125, 211, 357
SetI ASST 6 cut(s) 169, 322, 341, 369, 418, 438
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 223
SmlI CTYRAG 3 cut(s) 47, 223, 455
SmoI CTYRAG 3 cut(s) 47, 223, 455
Sse9I AATT 1 cut(s) 478
SsiI CCGC 4 cut(s) 128, 146, 160, 162
SspMI CTAG 2 cut(s) 98, 116
StyD4I CCNGG 3 cut(s) 123, 209, 355
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 384
TaiI ACGT 1 cut(s) 438
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 478
Tru1I TTAA 3 cut(s) 447, 456, 468
Tru9I TTAA 3 cut(s) 447, 456, 468
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 1 cut(s) 387
Tth111I GACNNNGTC 1 cut(s) 203
Vha464I CTTAAG 1 cut(s) 455
XhoI CTCGAG 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 97
XspI CTAG 2 cut(s) 98, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.