Rorug06G0507500

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000502
Physical Location & Seq
Reverse (-)
62235743 .. 62236665
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0507500.1

Sequence Viewer

Length: 366 bp
ATGGATAAGCAGCAAGAGGAAAACATATCATCTTCTCCAGGAAGATCAGGAGGAGGAGCAAAGAGAGAAGATGCAGCAGCAACAGGCTCAGGAATCAGAGCAGGGCCGCCATGTCCGACTTTTGTAGGCAAGCATAGAATGGCTGCTGCTATTTCCCATCTCCATACTCAAATCAACATTATTCAGGAAGAGCTTAACGAGCTCGAAGCAGTAGGCGAATCCTCCTTTGTCTGCAAAGAACTTGTTGCGAGCATTGAATCTGTTTCTGATCCCCTGCTTCCATGGAGTAAAGGAGCACCTGAAGCGGGCTGGGATAGGTGGTTCAGAGGAGCACACAACACCAGAAATAACAATCGCTGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

121

Amino Acids

13.12

Weight (kDa)

6.06

Isoelectric Point (pI)

65.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 107, 305
AclWI GGATC 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 1 cut(s) 257
AjnI CCWGG 1 cut(s) 37
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 2 cut(s) 193, 202
AluI AGCT 2 cut(s) 193, 202
Alw21I GWGCWC 3 cut(s) 204, 298, 334
AlwI GGATC 1 cut(s) 263
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 5 cut(s) 10, 74, 77, 143, 146
AspS9I GGNCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 3 cut(s) 204, 298, 334
BbvI GCAGC 5 cut(s) 22, 86, 89, 130, 133
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 39
BisI GCNGC 6 cut(s) 11, 75, 78, 107, 144, 147
BlsI GCNGC 6 cut(s) 12, 76, 79, 108, 145, 148
Bme1390I CCNGG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 305
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 3 cut(s) 66, 69, 342
BseXI GCAGC 5 cut(s) 22, 86, 89, 130, 133
BseYI CCCAGC 1 cut(s) 309
BshFI GGCC 1 cut(s) 106
BsiHKAI GWGCWC 3 cut(s) 204, 298, 334
BslI CCNNNNNNNGG 1 cut(s) 305
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 3 cut(s) 204, 298, 334
Bsp143I GATC 3 cut(s) 44, 268, 360
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 2 cut(s) 107, 305
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 101
BspPI GGATC 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 3 cut(s) 44, 268, 360
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 131, 250, 307
BstDEI CTNAG 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 281
BstKTI GATC 3 cut(s) 47, 271, 363
BstMBI GATC 3 cut(s) 44, 268, 360
BstMWI GCNNNNNNNGC 2 cut(s) 199, 302
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 5 cut(s) 22, 86, 89, 130, 133
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 281
Cac8I GCNNGC 3 cut(s) 131, 250, 307
Cfr13I GGNCC 1 cut(s) 104
CviAII CATG 2 cut(s) 111, 282
CviJI RGCY 6 cut(s) 87, 106, 143, 193, 202, 309
CviKI_1 RGCY 6 cut(s) 87, 106, 143, 193, 202, 309
DdeI CTNAG 1 cut(s) 88
DpnI GATC 3 cut(s) 46, 270, 362
DpnII GATC 3 cut(s) 44, 268, 360
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 2 cut(s) 114, 285
FaiI YATR 5 cut(s) 26, 112, 135, 165, 283
FatI CATG 2 cut(s) 110, 281
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 6 cut(s) 11, 75, 78, 107, 144, 147
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 6 cut(s) 11, 75, 78, 107, 144, 147
GluI GCNGC 6 cut(s) 11, 75, 78, 107, 144, 147
GsaI CCCAGC 1 cut(s) 313
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 1 cut(s) 106
Hin1II CATG 2 cut(s) 114, 285
HinfI GANTC 3 cut(s) 93, 218, 257
Hpy188I TCNGA 4 cut(s) 98, 117, 268, 326
Hpy188III TCNNGA 3 cut(s) 48, 90, 185
HpyCH4V TGCA 2 cut(s) 74, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 302
HpyF3I CTNAG 1 cut(s) 88
Hsp92II CATG 2 cut(s) 114, 285
Kzo9I GATC 3 cut(s) 44, 268, 360
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 3 cut(s) 56, 293, 329
Lsp1109I GCAGC 5 cut(s) 22, 86, 89, 130, 133
LweI GCATC 1 cut(s) 61
MalI GATC 3 cut(s) 46, 270, 362
MboI GATC 3 cut(s) 44, 268, 360
MboII GAAGA 4 cut(s) 24, 54, 80, 200
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 3 cut(s) 204, 298, 334
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 5 cut(s) 10, 44, 47, 232, 320
MseI TTAA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 199, 302
NcoI CCATGG 1 cut(s) 281
NdeII GATC 3 cut(s) 44, 268, 360
NlaIII CATG 2 cut(s) 114, 285
PciSI GCTCTTC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 93, 218, 257
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 6 cut(s) 12, 76, 79, 108, 145, 148
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 1 cut(s) 37
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 360
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 6 cut(s) 11, 75, 78, 107, 144, 147
Sau3AI GATC 3 cut(s) 44, 268, 360
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 3 cut(s) 204, 298, 334
SetI ASST 4 cut(s) 195, 204, 301, 320
SfaNI GCATC 1 cut(s) 61
SsiI CCGC 2 cut(s) 107, 305
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 281
TaqI TCGA 1 cut(s) 204
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 3 cut(s) 93, 218, 257
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 5 cut(s) 10, 74, 77, 143, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.