MD13G1111500.v1.1

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
8118489 .. 8121598
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1111500.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGCAACATCTGGCAAGAAGATCAAGATCGGAATCAACGGATTCGGAAGAATCGGACGATTGGTTGCTAGGGTCGCTCTTCAGAGGGATGATGTTGAACTTGTTGCTGTCAACGATCCCTTCATCACCACGGACTACATGACCTACATGTTCAAGTACGACACAGTCCATGGTCCATGGAAGCACCATGAGCTCAAGGTCAAGGACTCCAAGACCCTTCTCTTCGGTGAGAAGCCCGTCACCGTTTTCGGGATCAGGAACCCAGAGGAGATCCCATGGGGCGAGTGCGGTGCTGACTTCGTTGTTGAGTCTACCGGTGTTTTCACTGACAAGGAGAAAGCCGCTGCCCACATCAAGGGAGGTGCAAAGAAGGTTATCATCTCTGCCCCCAGCAAGGATGCTCCCATGTTCGTTGTTGGTGTGAACGAGAAGGAATACAAGCCAGACATCCACATTCTTTCCAATGCTAGTTGCACCACCAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTCGGAATTGTTGAGGGTCTCATGACCACAGTGCATTCCATCACTGCCACCCAGAAGACTGTTGATGGTCCATCACAGAAGGACTGGAGAGGTGGACGTGCTGCTTCCTTCAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCCGTCGGAAAGGTGCTCCCAGCACTTAACGGAAAGTTGACCGGAATGGCTTTCCGTGTGCCCACTGTTGATGTTTCAGTTGTTGACCTTACTGTCAGGCTTGCGAAGCCTGCAAGCTATGACCAGATCAAGGCTGCTATCAAAGAGGAGTCTGAGGGCAAGCTGAAGGGTATCTTGGGATACACCGAAGATGATGTTGTGTCCACTGACTTCATTGGTGACAGCAGGTCAAGCATCTTTGACGCCAAGGCTGGAATTGCATTGAACGATACCTTTGTCAAGCTCGTCTCATGGTATGACAATGAGTGGGGTTACAGTACCCGTGTGGTTGACTTGATCGTGCACGTAGCATCCACCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

342

Amino Acids

36.94

Weight (kDa)

8.24

Isoelectric Point (pI)

24.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 8 - 111 1.1e-33 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 163 - 320 5.7e-71 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 755
Acc36I ACCTGC 1 cut(s) 879
AccI GTMKAC 1 cut(s) 311
AciI CCGC 2 cut(s) 288, 342
AclWI GGATC 3 cut(s) 110, 260, 265
AcuI CTGAAG 2 cut(s) 65, 848
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 2 cut(s) 158, 982
AfiI CCNNNNNNNGG 5 cut(s) 249, 355, 394, 502, 793
AflIII ACRYGT 1 cut(s) 147
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 4 cut(s) 98, 154, 631, 928
AhdI GACNNNNNGTC 1 cut(s) 889
AjiI CACGTC 1 cut(s) 617
AjuI GAANNNNNNNTTGG 2 cut(s) 821, 853
AluBI AGCT 5 cut(s) 193, 656, 780, 826, 946
AluI AGCT 5 cut(s) 193, 656, 780, 826, 946
Alw21I GWGCWC 3 cut(s) 195, 681, 1008
Alw26I GTCTC 2 cut(s) 542, 955
Alw44I GTGCAC 1 cut(s) 1004
AlwI GGATC 3 cut(s) 110, 260, 265
AoxI GGCC 1 cut(s) 663
ApaLI GTGCAC 1 cut(s) 1004
ApeKI GCWGC 5 cut(s) 344, 620, 645, 656, 797
AsiGI ACCGGT 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 173, 587
AsuHPI GGTGA 4 cut(s) 118, 232, 239, 893
AvaII GGWCC 2 cut(s) 173, 587
BaeGI GKGCMC 2 cut(s) 726, 1008
BaeI ACNNNNGTAYC 2 cut(s) 924, 957
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 581
Bbv12I GWGCWC 3 cut(s) 195, 681, 1008
BbvI GCAGC 5 cut(s) 331, 607, 643, 657, 784
BccI CCATC 3 cut(s) 566, 578, 598
BceAI ACGGC 1 cut(s) 650
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciVI GTATCC 1 cut(s) 836
BcoDI GTCTC 2 cut(s) 542, 955
BfaI CTAG 3 cut(s) 69, 468, 642
BfuAI ACCTGC 1 cut(s) 879
BfuI GTATCC 1 cut(s) 836
BisI GCNGC 6 cut(s) 342, 345, 621, 646, 657, 798
BlsI GCNGC 6 cut(s) 343, 346, 622, 647, 658, 799
Bme18I GGWCC 2 cut(s) 173, 587
BmeRI GACNNNNNGTC 1 cut(s) 889
BmgBI CACGTC 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 173, 587
BmiI GGNNCC 1 cut(s) 260
BmsI GCATC 3 cut(s) 388, 906, 1022
BpiI GAAGAC 1 cut(s) 581
BpmI CTGGAG 2 cut(s) 625, 672
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 1009
BsaBI GATNNNNATC 2 cut(s) 26, 32
BsaHI GRCGYC 1 cut(s) 906
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 7 cut(s) 129, 169, 176, 275, 501, 660, 909
BsaWI WCCGGW 2 cut(s) 314, 704
Bsc4I CCNNNNNNNGG 5 cut(s) 249, 355, 394, 502, 793
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 608, 655
Bse8I GATNNNNATC 2 cut(s) 26, 32
BseDI CCNNGG 7 cut(s) 129, 169, 176, 275, 501, 660, 909
BseGI GGATG 4 cut(s) 94, 403, 447, 1013
BseJI GATNNNNATC 2 cut(s) 26, 32
BseLI CCNNNNNNNGG 5 cut(s) 249, 355, 394, 502, 793
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 2 cut(s) 608, 655
BseRI GAGGAG 2 cut(s) 281, 824
BseSI GKGCMC 2 cut(s) 726, 1008
BseXI GCAGC 5 cut(s) 331, 607, 643, 657, 784
BseYI CCCAGC 2 cut(s) 389, 682
BshFI GGCC 1 cut(s) 665
BshTI ACCGGT 1 cut(s) 314
BsiHKAI GWGCWC 3 cut(s) 195, 681, 1008
BsiSI CCGG 2 cut(s) 315, 705
BslI CCNNNNNNNGG 5 cut(s) 249, 355, 394, 502, 793
BsmAI GTCTC 2 cut(s) 542, 955
BsmBI CGTCTC 1 cut(s) 955
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 1 cut(s) 665
Bso31I GGTCTC 1 cut(s) 542
Bsp1286I GDGCHC 4 cut(s) 195, 681, 726, 1008
Bsp143I GATC 7 cut(s) 21, 27, 115, 252, 270, 789, 999
Bsp19I CCATGG 3 cut(s) 169, 176, 275
BspACI CCGC 2 cut(s) 288, 342
BspANI GGCC 1 cut(s) 665
BspCNI CTCAG 1 cut(s) 808
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 260
BspMI ACCTGC 1 cut(s) 879
BspPI GGATC 3 cut(s) 110, 260, 265
BspQI GCTCTTC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 542
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 2 cut(s) 608, 655
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 7 cut(s) 129, 169, 176, 275, 501, 660, 909
BssMI GATC 7 cut(s) 21, 27, 115, 252, 270, 789, 999
BssNI GRCGYC 1 cut(s) 906
BssT1I CCWWGG 6 cut(s) 169, 176, 275, 501, 660, 909
Bst4CI ACNGT 7 cut(s) 166, 244, 550, 580, 730, 757, 980
Bst6I CTCTTC 2 cut(s) 84, 227
BstACI GRCGYC 1 cut(s) 906
BstBAI YACGTR 1 cut(s) 1009
BstC8I GCNNGC 4 cut(s) 765, 774, 778, 824
BstDEI CTNAG 1 cut(s) 816
BstDSI CCRYGG 4 cut(s) 129, 169, 176, 275
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 4 cut(s) 94, 403, 447, 1013
BstKTI GATC 7 cut(s) 24, 30, 118, 255, 273, 792, 1002
BstMAI GTCTC 2 cut(s) 542, 955
BstMBI GATC 7 cut(s) 21, 27, 115, 252, 270, 789, 999
BstMWI GCNNNNNNNGC 8 cut(s) 74, 190, 497, 662, 769, 773, 894, 920
BstNSI RCATGY 1 cut(s) 151
BstSLI GKGCMC 2 cut(s) 726, 1008
BstV1I GCAGC 5 cut(s) 331, 607, 643, 657, 784
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 1 cut(s) 665
BtgI CCRYGG 4 cut(s) 129, 169, 176, 275
BtrI CACGTC 1 cut(s) 617
BtsCI GGATG 4 cut(s) 94, 403, 447, 1013
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 6 cut(s) 324, 555, 561, 648, 726, 867
BveI ACCTGC 1 cut(s) 879
Cac8I GCNNGC 4 cut(s) 765, 774, 778, 824
CciI TCATGA 1 cut(s) 540
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 173, 587
CseI GACGC 1 cut(s) 914
Csp6I GTAC 2 cut(s) 157, 981
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 9 cut(s) 139, 148, 170, 177, 188, 276, 406, 541, 954
CviQI GTAC 2 cut(s) 157, 981
DdeI CTNAG 1 cut(s) 816
DpnI GATC 7 cut(s) 23, 29, 117, 254, 272, 791, 1001
DpnII GATC 7 cut(s) 21, 27, 115, 252, 270, 789, 999
DrdI GACNNNNNNGTC 1 cut(s) 755
DriI GACNNNNNGTC 1 cut(s) 889
DseDI GACNNNNNNGTC 1 cut(s) 755
Eam1104I CTCTTC 2 cut(s) 84, 227
Eam1105I GACNNNNNGTC 1 cut(s) 889
EarI CTCTTC 2 cut(s) 84, 227
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 6 cut(s) 169, 176, 275, 501, 660, 909
Eco24I GRGCYC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 173, 587
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 65, 848
EcoICRI GAGCTC 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoT14I CCWWGG 6 cut(s) 169, 176, 275, 501, 660, 909
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 6 cut(s) 169, 176, 275, 501, 660, 909
Esp3I CGTCTC 1 cut(s) 955
FaeI CATG 9 cut(s) 142, 151, 173, 180, 191, 279, 409, 544, 957
FalI AAGNNNNNCTT 2 cut(s) 821, 853
FatI CATG 9 cut(s) 138, 147, 169, 176, 187, 275, 405, 540, 953
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 6 cut(s) 342, 345, 621, 646, 657, 798
FokI GGATG 4 cut(s) 101, 410, 434, 1000
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 6 cut(s) 342, 345, 621, 646, 657, 798
FspBI CTAG 3 cut(s) 69, 468, 642
GluI GCNGC 6 cut(s) 342, 345, 621, 646, 657, 798
GsaI CCCAGC 2 cut(s) 393, 686
GsuI CTGGAG 2 cut(s) 625, 672
HaeIII GGCC 1 cut(s) 665
HapII CCGG 2 cut(s) 315, 705
HgaI GACGC 1 cut(s) 914
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 9 cut(s) 142, 151, 173, 180, 191, 279, 409, 544, 957
HincII GTYRAC 4 cut(s) 112, 702, 748, 994
HindII GTYRAC 4 cut(s) 112, 702, 748, 994
HinfI GANTC 6 cut(s) 33, 42, 51, 206, 308, 812
HpaII CCGG 2 cut(s) 315, 705
HphI GGTGA 4 cut(s) 118, 232, 239, 893
Hpy166II GTNNAC 9 cut(s) 112, 312, 424, 614, 702, 748, 867, 994, 1006
Hpy188I TCNGA 7 cut(s) 32, 47, 56, 84, 524, 671, 817
Hpy188III TCNNGA 4 cut(s) 25, 250, 256, 541
Hpy8I GTNNAC 9 cut(s) 112, 312, 424, 614, 702, 748, 867, 994, 1006
Hpy99I CGWCG 1 cut(s) 671
HpyAV CCTTC 7 cut(s) 130, 227, 364, 424, 592, 637, 823
HpyCH4III ACNGT 7 cut(s) 166, 244, 550, 580, 730, 757, 980
HpyCH4IV ACGT 2 cut(s) 616, 1008
HpyCH4V TGCA 6 cut(s) 365, 474, 553, 776, 923, 1006
HpyF10VI GCNNNNNNNGC 8 cut(s) 74, 190, 497, 662, 769, 773, 894, 920
HpyF3I CTNAG 1 cut(s) 816
HpySE526I ACGT 2 cut(s) 616, 1008
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 9 cut(s) 142, 151, 173, 180, 191, 279, 409, 544, 957
Kzo9I GATC 7 cut(s) 21, 27, 115, 252, 270, 789, 999
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 4 cut(s) 406, 496, 653, 684
Lsp1109I GCAGC 5 cut(s) 331, 607, 643, 657, 784
LweI GCATC 3 cut(s) 388, 906, 1022
MaeI CTAG 3 cut(s) 69, 468, 642
MaeII ACGT 2 cut(s) 616, 1008
MaeIII GTNAC 3 cut(s) 238, 881, 974
MalI GATC 7 cut(s) 23, 29, 117, 254, 272, 791, 1001
MboI GATC 7 cut(s) 21, 27, 115, 252, 270, 789, 999
MboII GAAGA 6 cut(s) 31, 60, 71, 214, 586, 863
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 4 cut(s) 195, 681, 726, 1008
MluCI AATT 2 cut(s) 525, 918
MlyI GAGTC 3 cut(s) 200, 317, 821
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 7 cut(s) 78, 259, 353, 526, 602, 802, 811
MseI TTAA 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 315, 705
Mva1269I GAATGC 1 cut(s) 553
MwoI GCNNNNNNNGC 8 cut(s) 74, 190, 497, 662, 769, 773, 894, 920
NcoI CCATGG 3 cut(s) 169, 176, 275
NdeII GATC 7 cut(s) 21, 27, 115, 252, 270, 789, 999
NlaIII CATG 9 cut(s) 142, 151, 173, 180, 191, 279, 409, 544, 957
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 238, 881
NspI RCATGY 1 cut(s) 151
PagI TCATGA 1 cut(s) 540
PciI ACATGT 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 3 cut(s) 33, 42, 51
PflFI GACNNNGTC 1 cut(s) 164
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 6 cut(s) 343, 346, 622, 647, 658, 799
PleI GAGTC 3 cut(s) 200, 316, 820
PpsI GAGTC 3 cut(s) 200, 316, 820
Ppu21I YACGTR 1 cut(s) 1009
PscI ACATGT 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 195
PspFI CCCAGC 2 cut(s) 389, 682
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 2 cut(s) 173, 587
PsuI RGATCY 1 cut(s) 270
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 2 cut(s) 158, 982
RsaNI GTAC 2 cut(s) 157, 981
SacI GAGCTC 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 6 cut(s) 342, 345, 621, 646, 657, 798
Sau3AI GATC 7 cut(s) 21, 27, 115, 252, 270, 789, 999
Sau96I GGNCC 2 cut(s) 173, 587
SchI GAGTC 3 cut(s) 200, 317, 821
SduI GDGCHC 4 cut(s) 195, 681, 726, 1008
SfaNI GCATC 3 cut(s) 388, 906, 1022
SinI GGWCC 2 cut(s) 173, 587
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 525, 918
SsiI CCGC 2 cut(s) 288, 342
SspMI CTAG 3 cut(s) 69, 468, 642
SstI GAGCTC 1 cut(s) 195
StyI CCWWGG 6 cut(s) 169, 176, 275, 501, 660, 909
TaaI ACNGT 7 cut(s) 166, 244, 550, 580, 730, 757, 980
TaiI ACGT 2 cut(s) 619, 1011
TasI AATT 2 cut(s) 525, 918
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 3 cut(s) 33, 42, 51
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 6 cut(s) 331, 555, 568, 655, 733, 874
TseFI GTSAC 2 cut(s) 238, 881
TseI GCWGC 5 cut(s) 344, 620, 645, 656, 797
Tsp45I GTSAC 2 cut(s) 238, 881
TspDTI ATGAA 2 cut(s) 112, 865
TspGWI ACGGA 4 cut(s) 54, 146, 707, 708
TspRI CASTG 6 cut(s) 331, 555, 568, 655, 733, 874
Tth111I GACNNNGTC 1 cut(s) 164
VneI GTGCAC 1 cut(s) 1004
VpaK11BI GGWCC 2 cut(s) 173, 587
XagI CCTNNNNNAGG 1 cut(s) 500
XceI RCATGY 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 311
XspI CTAG 3 cut(s) 69, 468, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.