pycom111g01370

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000502
Physical Location & Seq
Reverse (-)
884521 .. 886595
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01370.4

Sequence Viewer

Length: 990 bp
ATGTCCAAGATCAAGATAGGCATCAATGGATTCGGAAGGATCGGCCGCTTGGTGGCCAGGGTTGCTCTCCAGAGAGACGACATTGAGCTCGTCGCTGTCAACGATCCCTTCATCAACGTCGAATACATGAGCTACATGTTTAAGTACGACACTGTTCACGGGCAATGGAAGCACCACGAGTTTAAGGTTAAGGATGATAAGACCCTTCTCTTTGGTGACAAGCCCGTCAAAGTTTTTGCTTTTAGGGATCCCGAACAGATCCCGTGGGGGGAAGCTGGTGCGGAATTTGTGGTCGAGTCCACCGGAGTTTTTACCGATAAGGAAAAAGCCTCTCTGCACTTAAAGGGTGGTGCAAAGAAGGTTATCATTTCTGCCCCAAGTAAGGATGCCCCAATGTTTGTTGTGGGTGTCAATGAGAAGGAGTACAAGCCGGATCTTGACATTGTCTCCAACGCCAGCTGCACTACCAACTGTCTTGCCCCATTGGCAAAGGTTATCCATGACAAGTTTGGTATTGTGGAGGGTCTTATGACTACCGTCCATTCTATTACTGCCACCCAAAAGACTGTTGATGGACCGTCAATGAAAGACTGGAGAGGTGGCAGAGCTGCTGCTACCAACATCATTCCCAGCAGTACTGGAGCTGCCAAGGCCGTGGGGAAAGTGCTGCCTGCATTGAACGGGAAGTTGACGGGAATGGCATTCCGTGTTCCCACGGTGGATGTTTCGGTGGTTGATCTCACAGTGAGACTTGAGAAGAAGGCCACTTACGATGAGATCAAAAATGCCATCAAGAAAGAATCAGAGGGAAGCCTGAAGGGAATCCTTGGATACACGGACGAAGATGTGGTGTCGACGGACTTTGTGGGTGATAACCGGTCGAGCATTTTCGATGCCAAGGCTGGTATTGCTTTGAACGACAACTTTGTGAAGCTTGTGTCTTGCTCACGAGTTATTGACTTGATCCGTCACATTGCCTCGGTTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

330

Amino Acids

35.82

Weight (kDa)

8.73

Isoelectric Point (pI)

23.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 854
AciI CCGC 2 cut(s) 46, 281
AclWI GGATC 7 cut(s) 47, 98, 242, 253, 255, 441, 958
AcoI YGGCCR 2 cut(s) 43, 54
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 836
AfaI GTAC 3 cut(s) 146, 425, 637
AfiI CCNNNNNNNGG 3 cut(s) 52, 268, 382
AflIII ACRYGT 1 cut(s) 135
AgeI ACCGGT 1 cut(s) 876
AgsI TTSAA 2 cut(s) 679, 916
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 7 cut(s) 88, 132, 275, 459, 608, 644, 934
AluI AGCT 7 cut(s) 88, 132, 275, 459, 608, 644, 934
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 3 cut(s) 69, 451, 742
AlwI GGATC 7 cut(s) 47, 98, 242, 253, 255, 441, 958
AoxI GGCC 4 cut(s) 43, 54, 651, 762
ApeKI GCWGC 5 cut(s) 459, 608, 611, 644, 667
ApoI RAATTY 1 cut(s) 284
AsiGI ACCGGT 1 cut(s) 876
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 227, 881
AvaII GGWCC 1 cut(s) 575
BalI TGGCCA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 90
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
BauI CACGAG 2 cut(s) 176, 948
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 5 cut(s) 446, 595, 598, 631, 654
BccI CCATC 2 cut(s) 566, 797
BceAI ACGGC 1 cut(s) 638
BciT130I CCWGG 1 cut(s) 58
BciVI GTATCC 1 cut(s) 824
BcoDI GTCTC 3 cut(s) 69, 451, 742
BfuI GTATCC 1 cut(s) 824
BglI GCCNNNNNGGC 1 cut(s) 485
BisI GCNGC 6 cut(s) 46, 460, 609, 612, 645, 668
BlsI GCNGC 6 cut(s) 47, 461, 610, 613, 646, 669
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 3 cut(s) 30, 376, 883
BoxI GACNNNNGTC 1 cut(s) 536
BpmI CTGGAG 3 cut(s) 53, 613, 660
BpuEI CTTGAG 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 8 cut(s) 57, 263, 648, 654, 714, 826, 897, 978
BsaWI WCCGGW 2 cut(s) 302, 876
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 268, 382
Bse118I RCCGGY 1 cut(s) 876
Bse1I ACTGG 2 cut(s) 596, 643
Bse3DI GCAATG 2 cut(s) 170, 972
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 8 cut(s) 57, 263, 648, 654, 714, 826, 897, 978
BseGI GGATG 3 cut(s) 199, 391, 727
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 3 cut(s) 52, 268, 382
BseMI GCAATG 2 cut(s) 170, 972
BseNI ACTGG 2 cut(s) 596, 643
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 5 cut(s) 446, 595, 598, 631, 654
BseYI CCCAGC 1 cut(s) 629
BsgI GTGCAG 2 cut(s) 320, 445
Bsh1285I CGRYCG 2 cut(s) 46, 881
BshFI GGCC 4 cut(s) 45, 56, 653, 764
BshTI ACCGGT 1 cut(s) 876
BsiEI CGRYCG 2 cut(s) 46, 881
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 3 cut(s) 303, 431, 877
BslI CCNNNNNNNGG 3 cut(s) 52, 268, 382
BsmAI GTCTC 3 cut(s) 69, 451, 742
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 4 cut(s) 45, 56, 653, 764
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 9 cut(s) 9, 39, 103, 247, 258, 433, 736, 777, 963
BspACI CCGC 2 cut(s) 46, 281
BspANI GGCC 4 cut(s) 45, 56, 653, 764
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 7 cut(s) 47, 98, 242, 253, 255, 441, 958
BsrDI GCAATG 2 cut(s) 170, 972
BsrFI RCCGGY 1 cut(s) 876
BsrI ACTGG 2 cut(s) 596, 643
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 8 cut(s) 57, 263, 648, 654, 714, 826, 897, 978
BssMI GATC 9 cut(s) 9, 39, 103, 247, 258, 433, 736, 777, 963
BssSI CACGAG 2 cut(s) 176, 948
BssT1I CCWWGG 3 cut(s) 648, 826, 897
Bst2BI CACGAG 2 cut(s) 176, 948
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 7 cut(s) 154, 473, 538, 568, 579, 718, 745
BstC8I GCNNGC 2 cut(s) 457, 672
BstDSI CCRYGG 3 cut(s) 263, 654, 714
BstF5I GGATG 3 cut(s) 199, 391, 727
BstKTI GATC 9 cut(s) 12, 42, 106, 250, 261, 436, 739, 780, 966
BstMAI GTCTC 3 cut(s) 69, 451, 742
BstMBI GATC 9 cut(s) 9, 39, 103, 247, 258, 433, 736, 777, 963
BstMCI CGRYCG 2 cut(s) 46, 881
BstMWI GCNNNNNNNGC 5 cut(s) 62, 169, 485, 650, 908
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 5 cut(s) 446, 595, 598, 631, 654
BstX2I RGATCY 3 cut(s) 247, 258, 433
BstXI CCANNNNNNTGG 1 cut(s) 655
BstYI RGATCY 3 cut(s) 247, 258, 433
BstZI CGGCCG 1 cut(s) 43
BsuI GTATCC 1 cut(s) 824
BsuRI GGCC 4 cut(s) 45, 56, 653, 764
BtgI CCRYGG 3 cut(s) 263, 654, 714
BtsCI GGATG 3 cut(s) 199, 391, 727
BtsIMutI CAGTG 2 cut(s) 150, 750
Cac8I GCNNGC 2 cut(s) 457, 672
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 3 cut(s) 145, 424, 636
CspAI ACCGGT 1 cut(s) 876
CviAII CATG 3 cut(s) 127, 136, 500
CviQI GTAC 3 cut(s) 145, 424, 636
DpnI GATC 9 cut(s) 11, 41, 105, 249, 260, 435, 738, 779, 965
DpnII GATC 9 cut(s) 9, 39, 103, 247, 258, 433, 736, 777, 963
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 2 cut(s) 43, 54
EagI CGGCCG 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 648, 826, 897
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 575
Eco52I CGGCCG 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 3 cut(s) 648, 826, 897
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 648, 826, 897
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 3 cut(s) 130, 139, 503
FaiI YATR 4 cut(s) 128, 137, 501, 530
FatI CATG 3 cut(s) 126, 135, 499
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 6 cut(s) 46, 460, 609, 612, 645, 668
FokI GGATG 3 cut(s) 206, 398, 734
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 6 cut(s) 46, 460, 609, 612, 645, 668
GluI GCNGC 6 cut(s) 46, 460, 609, 612, 645, 668
GsaI CCCAGC 1 cut(s) 633
GsuI CTGGAG 3 cut(s) 53, 613, 660
HaeIII GGCC 4 cut(s) 45, 56, 653, 764
HapII CCGG 3 cut(s) 303, 431, 877
Hin1II CATG 3 cut(s) 130, 139, 503
HincII GTYRAC 3 cut(s) 100, 690, 855
HindII GTYRAC 3 cut(s) 100, 690, 855
HindIII AAGCTT 1 cut(s) 932
HinfI GANTC 4 cut(s) 30, 296, 800, 822
HpaII CCGG 3 cut(s) 303, 431, 877
HphI GGTGA 2 cut(s) 227, 881
Hpy166II GTNNAC 5 cut(s) 100, 157, 300, 690, 855
Hpy188I TCNGA 2 cut(s) 35, 805
Hpy188III TCNNGA 6 cut(s) 13, 70, 251, 437, 793, 948
Hpy8I GTNNAC 5 cut(s) 100, 157, 300, 690, 855
Hpy99I CGWCG 3 cut(s) 95, 122, 859
HpyAV CCTTC 7 cut(s) 30, 118, 215, 352, 412, 754, 811
HpyCH4III ACNGT 7 cut(s) 154, 473, 538, 568, 579, 718, 745
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 337, 353, 462, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 169, 485, 650, 908
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 130, 139, 503
Kzo9I GATC 9 cut(s) 9, 39, 103, 247, 258, 433, 736, 777, 963
LmnI GCTCC 1 cut(s) 641
Lsp1109I GCAGC 5 cut(s) 446, 595, 598, 631, 654
LweI GCATC 3 cut(s) 30, 376, 883
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 215, 968
MalI GATC 9 cut(s) 11, 41, 105, 249, 260, 435, 738, 779, 965
MboI GATC 9 cut(s) 9, 39, 103, 247, 258, 433, 736, 777, 963
MboII GAAGA 2 cut(s) 769, 854
MflI RGATCY 3 cut(s) 247, 258, 433
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 284
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 5 cut(s) 340, 514, 590, 799, 988
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 5 cut(s) 141, 183, 189, 341, 984
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 3 cut(s) 303, 431, 877
MspR9I CCNGG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 5 cut(s) 62, 169, 485, 650, 908
NdeII GATC 9 cut(s) 9, 39, 103, 247, 258, 433, 736, 777, 963
NlaIII CATG 3 cut(s) 130, 139, 503
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 215, 968
NspI RCATGY 1 cut(s) 139
PciI ACATGT 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 30, 800, 822
PflFI GACNNNGTC 1 cut(s) 443
PinAI ACCGGT 1 cut(s) 876
PkrI GCNGC 6 cut(s) 47, 461, 610, 613, 646, 669
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PscI ACATGT 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 536
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 629
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 575
PsuI RGATCY 3 cut(s) 247, 258, 433
PsyI GACNNNGTC 1 cut(s) 443
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 3 cut(s) 146, 425, 637
RsaNI GTAC 3 cut(s) 145, 424, 636
SacI GAGCTC 1 cut(s) 90
SalI GTCGAC 1 cut(s) 853
SaqAI TTAA 5 cut(s) 141, 183, 189, 341, 984
SatI GCNGC 6 cut(s) 46, 460, 609, 612, 645, 668
Sau3AI GATC 9 cut(s) 9, 39, 103, 247, 258, 433, 736, 777, 963
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 3 cut(s) 30, 376, 883
SinI GGWCC 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 1 cut(s) 284
SsiI CCGC 2 cut(s) 46, 281
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 3 cut(s) 648, 826, 897
TaaI ACNGT 7 cut(s) 154, 473, 538, 568, 579, 718, 745
TaiI ACGT 1 cut(s) 120
TaqI TCGA 5 cut(s) 120, 294, 854, 881, 891
TasI AATT 1 cut(s) 284
TatI WGTACW 2 cut(s) 423, 635
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 30, 800, 822
Tru1I TTAA 5 cut(s) 141, 183, 189, 341, 984
Tru9I TTAA 5 cut(s) 141, 183, 189, 341, 984
TscAI CASTG 2 cut(s) 157, 750
TseFI GTSAC 2 cut(s) 215, 968
TseI GCWGC 5 cut(s) 459, 608, 611, 644, 667
Tsp45I GTSAC 2 cut(s) 215, 968
TspDTI ATGAA 2 cut(s) 100, 599
TspGWI ACGGA 4 cut(s) 695, 851, 872, 956
TspRI CASTG 2 cut(s) 157, 750
Tth111I GACNNNGTC 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 854
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.