Rh5DG147700

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000502
Physical Location & Seq
Forward (+)
15045583 .. 15050133
4551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG147700.1

Sequence Viewer

Length: 921 bp
ATGTTCAAGCACGACACTGTCCACGGTGCATGGAAGAATTGCGATGTGAAACTTAAGAATGCAAATCACGTTTACTTTGGTAACAAGGTAGTCACCATTTTTGCAATCAGCCGAGAAGACGAAATCCCTTGGTCTGGTCCCGGAGCCGAATACATCGTGGATGCCTCTGGTACTGCCACCGAAATCGAATTTGCTCAGGGCCATTTGAAGGGCGGAGCAAAGAAGGTTATTGTCACTTGCCCGTGTGACGGTGCTCCTACATTTGTTGTGGGTGTCAATGAGAAGGAATACAAGCCGGAGCTTAATGTTGTTTCCGGTGCTAGTTGCACCACCAACTGCCTTGCCCCCCTTGCAAAGGTAATTCATGATAAATTTGGTATCATCGAGGGTCTAATGAGCACTGTTCACTCAGTTACTGCTAGCCAAAGAGGTGTTGATGGAACATGTCATAATGATTGGAGACCTGGAAAAGCTGCACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCCACTACTACCGGAGCTGCTAAGGCTGTTGGTAAAGTTCTACCTGACCTGGATGGTAAATTGACCGGAATGTCATTCCGTGTTCCTAGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGACTAGAAAAGCCAGCTACGTATGAGGAAATAAAAGCTGCAATCAAGGAAGAGTCTGAGGGGAACCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTAGTCTCTACTGACTTTGAGCGTGACAGCAGGTCAAGTATTTTTGATGCAAAGGCCGGAATTGCTTTGAACGATAACTTCCACAAGTTGGTTGCATGGTACGACAACGAGTGGGGATACAGCACTCGCATCGTTGACTTGATGACCTACATTGCGTCATTTGATTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

306

Amino Acids

33.23

Weight (kDa)

5.65

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 1 - 60 1.5e-06 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 114 - 159 1.3e-13 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 161 - 283 2.3e-49 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 598
Acc36I ACCTGC 1 cut(s) 768
AccB7I CCANNNNNTGG 1 cut(s) 835
AccI GTMKAC 1 cut(s) 636
AciI CCGC 1 cut(s) 213
AcsI RAATTY 2 cut(s) 188, 371
AcuI CTGAAG 2 cut(s) 737, 759
AfaI GTAC 2 cut(s) 172, 848
AfiI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 835
AflII CTTAAG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 3 cut(s) 7, 208, 817
AhdI GACNNNNNGTC 1 cut(s) 778
AjnI CCWGG 2 cut(s) 463, 576
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AluBI AGCT 6 cut(s) 301, 473, 509, 545, 665, 686
AluI AGCT 6 cut(s) 301, 473, 509, 545, 665, 686
Alw21I GWGCWC 2 cut(s) 256, 401
Alw26I GTCTC 3 cut(s) 454, 643, 757
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 2 cut(s) 199, 801
ApeKI GCWGC 4 cut(s) 473, 509, 545, 686
ApoI RAATTY 2 cut(s) 188, 371
AspS9I GGNCC 2 cut(s) 137, 199
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 85
AsuNHI GCTAGC 1 cut(s) 419
AvaII GGWCC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 256, 401
BbvI GCAGC 4 cut(s) 460, 496, 532, 673
BccI CCATC 2 cut(s) 431, 575
BcgI CGANNNNNNTGC 2 cut(s) 859, 893
BciT130I CCWGG 2 cut(s) 465, 578
BciVI GTATCC 1 cut(s) 857
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 3 cut(s) 454, 643, 757
BfaI CTAG 4 cut(s) 321, 420, 615, 653
BfrI CTTAAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 768
BfuI GTATCC 1 cut(s) 857
BisI GCNGC 4 cut(s) 474, 510, 546, 687
BlsI GCNGC 4 cut(s) 475, 511, 547, 688
Bme1390I CCNGG 3 cut(s) 141, 465, 578
Bme18I GGWCC 1 cut(s) 137
BmeRI GACNNNNNGTC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 137, 199
BmiI GGNNCC 3 cut(s) 139, 145, 713
BmrFI CCNGG 3 cut(s) 141, 465, 578
BmsI GCATC 3 cut(s) 151, 784, 885
BmtI GCTAGC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 195, 549
BpuMI CCSGG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 22, 128
BsaWI WCCGGW 3 cut(s) 314, 539, 593
Bsc4I CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 835
Bse3DI GCAATG 1 cut(s) 897
BseBI CCWGG 2 cut(s) 465, 578
BseDI CCNNGG 2 cut(s) 22, 128
BseGI GGATG 2 cut(s) 166, 586
BseLI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 835
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 3 cut(s) 209, 423, 696
BseXI GCAGC 4 cut(s) 460, 496, 532, 673
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 2 cut(s) 201, 803
BsiHKAI GWGCWC 2 cut(s) 256, 401
BsiSI CCGG 6 cut(s) 141, 296, 315, 540, 594, 804
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 835
BsmAI GTCTC 3 cut(s) 454, 643, 757
BsmFI GGGAC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 201, 803
Bso31I GGTCTC 1 cut(s) 454
Bsp1286I GDGCHC 2 cut(s) 256, 401
BspACI CCGC 1 cut(s) 213
BspANI GGCC 2 cut(s) 201, 803
BspCNI CTCAG 3 cut(s) 208, 422, 697
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 3 cut(s) 139, 145, 713
BspMI ACCTGC 1 cut(s) 768
BspOI GCTAGC 1 cut(s) 423
BspQI GCTCTTC 1 cut(s) 499
BspTI CTTAAG 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 897
BssECI CCNNGG 2 cut(s) 22, 128
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 2 cut(s) 465, 578
Bst4CI ACNGT 5 cut(s) 19, 26, 251, 403, 646
Bst6I CTCTTC 2 cut(s) 499, 693
BstAFI CTTAAG 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 669
BstC8I GCNNGC 2 cut(s) 421, 663
BstDEI CTNAG 4 cut(s) 195, 409, 549, 705
BstDSI CCRYGG 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 166, 586
BstMAI GTCTC 3 cut(s) 454, 643, 757
BstMWI GCNNNNNNNGC 3 cut(s) 350, 551, 809
BstNI CCWGG 2 cut(s) 465, 578
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 3 cut(s) 139, 463, 576
BstSNI TACGTA 1 cut(s) 669
BstV1I GCAGC 4 cut(s) 460, 496, 532, 673
BstV2I GAAGAC 1 cut(s) 123
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 2 cut(s) 201, 803
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 166, 586
BtsIMutI CAGTG 4 cut(s) 15, 399, 651, 735
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 2 cut(s) 421, 663
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 137, 199
CseI GACGC 1 cut(s) 891
Csp6I GTAC 2 cut(s) 171, 847
CviAII CATG 4 cut(s) 30, 365, 444, 843
CviQI GTAC 2 cut(s) 171, 847
DdeI CTNAG 4 cut(s) 195, 409, 549, 705
DrdI GACNNNNNNGTC 1 cut(s) 598
DriI GACNNNNNGTC 1 cut(s) 778
DseDI GACNNNNNNGTC 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 499, 693
Eam1105I GACNNNNNGTC 1 cut(s) 778
EarI CTCTTC 2 cut(s) 499, 693
EciI GGCGGA 1 cut(s) 228
Eco105I TACGTA 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 737, 759
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 463, 576
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 4 cut(s) 33, 368, 447, 846
FaiI YATR 8 cut(s) 31, 366, 445, 450, 516, 672, 844, 919
FalI AAGNNNNNCTT 4 cut(s) 496, 528, 710, 742
FaqI GGGAC 1 cut(s) 123
FatI CATG 4 cut(s) 29, 364, 443, 842
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 4 cut(s) 474, 510, 546, 687
FokI GGATG 2 cut(s) 173, 593
Fsp4HI GCNGC 4 cut(s) 474, 510, 546, 687
FspBI CTAG 4 cut(s) 321, 420, 615, 653
GluI GCNGC 4 cut(s) 474, 510, 546, 687
HaeIII GGCC 2 cut(s) 201, 803
HapII CCGG 6 cut(s) 141, 296, 315, 540, 594, 804
HgaI GACGC 1 cut(s) 891
Hin1II CATG 4 cut(s) 33, 368, 447, 846
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 3 cut(s) 701, 723, 911
HpaII CCGG 6 cut(s) 141, 296, 315, 540, 594, 804
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 5 cut(s) 22, 73, 406, 637, 883
Hpy188I TCNGA 1 cut(s) 706
Hpy188III TCNNGA 2 cut(s) 365, 620
Hpy8I GTNNAC 5 cut(s) 22, 73, 406, 637, 883
HpyAV CCTTC 4 cut(s) 202, 217, 277, 712
HpyCH4III ACNGT 5 cut(s) 19, 26, 251, 403, 646
HpyCH4IV ACGT 2 cut(s) 69, 668
HpyCH4V TGCA 9 cut(s) 29, 62, 104, 327, 353, 476, 689, 797, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 551, 809
HpyF3I CTNAG 4 cut(s) 195, 409, 549, 705
HpySE526I ACGT 2 cut(s) 69, 668
Hsp92II CATG 4 cut(s) 33, 368, 447, 846
LguI GCTCTTC 1 cut(s) 499
LmnI GCTCC 5 cut(s) 143, 215, 259, 298, 542
Lsp1109I GCAGC 4 cut(s) 460, 496, 532, 673
LweI GCATC 3 cut(s) 151, 784, 885
MaeI CTAG 4 cut(s) 321, 420, 615, 653
MaeII ACGT 2 cut(s) 69, 668
MaeIII GTNAC 7 cut(s) 80, 91, 232, 245, 412, 731, 770
MboII GAAGA 5 cut(s) 46, 128, 516, 710, 752
MhlI GDGCHC 2 cut(s) 256, 401
MluCI AATT 7 cut(s) 37, 188, 360, 371, 498, 587, 807
MlyI GAGTC 1 cut(s) 710
MnlI CCTC 5 cut(s) 175, 379, 422, 667, 700
MseI TTAA 2 cut(s) 54, 303
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 6 cut(s) 141, 296, 315, 540, 594, 804
MspR9I CCNGG 3 cut(s) 141, 465, 578
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 2 cut(s) 465, 578
MwoI GCNNNNNNNGC 3 cut(s) 350, 551, 809
NciI CCSGG 1 cut(s) 141
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 4 cut(s) 33, 368, 447, 846
NlaIV GGNNCC 3 cut(s) 139, 145, 713
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 4 cut(s) 91, 232, 245, 770
NspI RCATGY 1 cut(s) 447
PagI TCATGA 1 cut(s) 364
PciI ACATGT 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 499
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 723, 911
PflFI GACNNNGTC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 835
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 4 cut(s) 475, 511, 547, 688
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
Ppu21I YACGTR 1 cut(s) 669
PscI ACATGT 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 463, 576
PspGI CCWGG 2 cut(s) 463, 576
PspN4I GGNNCC 3 cut(s) 139, 145, 713
PspPI GGNCC 2 cut(s) 137, 199
PstNI CAGNNNCTG 1 cut(s) 416
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 2 cut(s) 172, 848
RsaNI GTAC 2 cut(s) 171, 847
SapI GCTCTTC 1 cut(s) 499
SaqAI TTAA 2 cut(s) 54, 303
SatI GCNGC 4 cut(s) 474, 510, 546, 687
Sau96I GGNCC 2 cut(s) 137, 199
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 3 cut(s) 141, 465, 578
SduI GDGCHC 2 cut(s) 256, 401
SfaNI GCATC 3 cut(s) 151, 784, 885
SinI GGWCC 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SnaBI TACGTA 1 cut(s) 669
Sse9I AATT 7 cut(s) 37, 188, 360, 371, 498, 587, 807
SsiI CCGC 1 cut(s) 213
SspMI CTAG 4 cut(s) 321, 420, 615, 653
StyD4I CCNGG 3 cut(s) 139, 463, 576
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 5 cut(s) 19, 26, 251, 403, 646
TaiI ACGT 2 cut(s) 72, 671
TaqI TCGA 2 cut(s) 186, 384
TasI AATT 7 cut(s) 37, 188, 360, 371, 498, 587, 807
TfiI GAWTC 2 cut(s) 723, 911
Tru1I TTAA 2 cut(s) 54, 303
Tru9I TTAA 2 cut(s) 54, 303
TscAI CASTG 4 cut(s) 22, 406, 651, 742
TseFI GTSAC 4 cut(s) 91, 232, 245, 770
TseI GCWGC 4 cut(s) 473, 509, 545, 686
Tsp45I GTSAC 4 cut(s) 91, 232, 245, 770
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 4 cut(s) 22, 406, 651, 742
Tth111I GACNNNGTC 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 835
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 188, 371
XceI RCATGY 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 4 cut(s) 321, 420, 615, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.