Rw7G021070

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000502
Physical Location & Seq
Reverse (-)
24222330 .. 24222979
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021070.1

Sequence Viewer

Length: 372 bp
ATGGCAGCCAAGATCAAGATCGGAATCAACGGTTTCGGAAGGATTGGGCGTTTGGTTGCTAGGGTCGCTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAACGATCCATTCATCACCACCGACTACATGACGTACATGTTCAAGTATGACACTGTCCATGGACCATGGAAGCACCATGAGCTTAAGGTCAAGGACGAAAAGACCCTTCTCTTCGGTGAGAAGGCCGTTACTGTGAGAGAAGCGGAGAGACTGGTGGTGTCAGAGGATGTGAGAGAAGCGGAGAGACTGGTGGCGGCAACTGAAAATATATTATGTGGAATTGAAAATAAAATTTGTATTTATTTATATGGCATGATACCTAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

123

Amino Acids

14.04

Weight (kDa)

6.83

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 5 - 82 2.5e-22 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 245, 281, 296
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 2 cut(s) 333, 366
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 1 cut(s) 137
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 2 cut(s) 145, 326
AluBI AGCT 2 cut(s) 91, 184
AluI AGCT 2 cut(s) 91, 184
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 244, 280
AlwI GGATC 1 cut(s) 101
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 333, 366
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 109, 230
AvaII GGWCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 244, 280
BfaI CTAG 2 cut(s) 60, 363
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 2 cut(s) 6, 297
BlsI GCNGC 2 cut(s) 7, 298
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BsaBI GATNNNNATC 2 cut(s) 17, 23
BsaJI CCNNGG 2 cut(s) 160, 167
Bse1I ACTGG 2 cut(s) 258, 294
Bse8I GATNNNNATC 2 cut(s) 17, 23
BseDI CCNNGG 2 cut(s) 160, 167
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 2 cut(s) 17, 23
BseNI ACTGG 2 cut(s) 258, 294
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 244, 280
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 12, 18, 106
Bsp19I CCATGG 2 cut(s) 160, 167
BspACI CCGC 3 cut(s) 245, 281, 296
BspANI GGCC 1 cut(s) 227
BspPI GGATC 1 cut(s) 101
BspQI GCTCTTC 1 cut(s) 75
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 2 cut(s) 258, 294
BssECI CCNNGG 2 cut(s) 160, 167
BssMI GATC 3 cut(s) 12, 18, 106
BssT1I CCWWGG 2 cut(s) 160, 167
Bst4CI ACNGT 3 cut(s) 32, 157, 235
Bst6I CTCTTC 2 cut(s) 75, 218
BstAFI CTTAAG 1 cut(s) 185
BstDSI CCRYGG 2 cut(s) 160, 167
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 3 cut(s) 15, 21, 109
BstMAI GTCTC 2 cut(s) 244, 280
BstMBI GATC 3 cut(s) 12, 18, 106
BstMWI GCNNNNNNNGC 2 cut(s) 65, 181
BstNSI RCATGY 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 2 cut(s) 160, 167
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 136
CviAII CATG 6 cut(s) 130, 139, 161, 168, 179, 355
CviJI RGCY 4 cut(s) 8, 91, 184, 227
CviKI_1 RGCY 4 cut(s) 8, 91, 184, 227
CviQI GTAC 1 cut(s) 136
DpnI GATC 3 cut(s) 14, 20, 108
DpnII GATC 3 cut(s) 12, 18, 106
Eam1104I CTCTTC 2 cut(s) 75, 218
EarI CTCTTC 2 cut(s) 75, 218
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 160, 167
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 160, 167
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 2 cut(s) 160, 167
FaeI CATG 6 cut(s) 133, 142, 164, 171, 182, 358
FaqI GGGAC 1 cut(s) 92
FatI CATG 6 cut(s) 129, 138, 160, 167, 178, 354
Fnu4HI GCNGC 2 cut(s) 6, 297
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 2 cut(s) 6, 297
FspBI CTAG 2 cut(s) 60, 363
GluI GCNGC 2 cut(s) 6, 297
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 6 cut(s) 133, 142, 164, 171, 182, 358
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 24
HpaI GTTAAC 1 cut(s) 103
HphI GGTGA 2 cut(s) 109, 230
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 4 cut(s) 23, 38, 75, 265
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 33, 217, 218
HpyCH4III ACNGT 3 cut(s) 32, 157, 235
HpyCH4IV ACGT 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 181
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 6 cut(s) 133, 142, 164, 171, 182, 358
KspAI GTTAAC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 12, 18, 106
LguI GCTCTTC 1 cut(s) 75
LpnPI CCDG 2 cut(s) 239, 275
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 60, 363
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 229
MalI GATC 3 cut(s) 14, 20, 108
MboI GATC 3 cut(s) 12, 18, 106
MboII GAAGA 2 cut(s) 62, 205
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 321, 333, 366
MnlI CCTC 2 cut(s) 69, 259
MseI TTAA 2 cut(s) 102, 186
MspCI CTTAAG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 65, 181
NcoI CCATGG 2 cut(s) 160, 167
NdeII GATC 3 cut(s) 12, 18, 106
NlaIII CATG 6 cut(s) 133, 142, 164, 171, 182, 358
NspI RCATGY 1 cut(s) 142
PciI ACATGT 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 1 cut(s) 24
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 7, 298
PscI ACATGT 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 164
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 102, 186
SatI GCNGC 2 cut(s) 6, 297
Sau3AI GATC 3 cut(s) 12, 18, 106
Sau96I GGNCC 1 cut(s) 164
SduI GDGCHC 1 cut(s) 93
SetI ASST 5 cut(s) 93, 137, 186, 192, 364
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 321, 333, 366
SsiI CCGC 3 cut(s) 245, 281, 296
SspMI CTAG 2 cut(s) 60, 363
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 2 cut(s) 160, 167
TaaI ACNGT 3 cut(s) 32, 157, 235
TaiI ACGT 1 cut(s) 137
TasI AATT 3 cut(s) 321, 333, 366
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 2 cut(s) 102, 186
Tru9I TTAA 2 cut(s) 102, 186
TscAI CASTG 1 cut(s) 160
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 103
TspRI CASTG 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 2 cut(s) 333, 366
XceI RCATGY 1 cut(s) 142
XspI CTAG 2 cut(s) 60, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.