FvH4_5g07640

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000502
Physical Location & Seq
Forward (+)
4443362 .. 4445547
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07640.t1

Sequence Viewer

Length: 1017 bp
ATGTTCAAGCACGATACTGTTCATGGTGCATGGAAGAATTGCGATGTGAAGCTTAAGAATGCAAACCATGTTTACTTTGGTAACAAGGAAGTCACCATTTTTGCAATCAGCCGAGAAGATGAGGTCCCTTGGTGCGGCCCGGAGCTGAATACATCGTGGATGCCTCTGGGGGGAGCTAAGAAGGTTATTGTCACTGCCTTTTGTGAAGGTGCTCCTGCGCTTGTTGTGGGTGTCAATGAGAAGGAATACAAGCCAGAGTTTGATGTTGTTTCCGGTGCTAGTTGCACCACCAACTGCCTTGCTCCCCTTGCAAAGGTCATTCATGAAAGATTTGGTATTGTGGAGGGTCTGATGAGCACTGTTCACTCAATAACTTGTAGGGTTCTCTTTGTTGTTCGTATTACAATTCTTTTAGGCCTTGTTTGGTTTGAGGAAACCGAACAATTCAATGTCACCTTTTGTGGCACCATCTTCCTTGAGCAGCAAATTCTTGTTTTTCAAGCTTGCACTTCCACTACCCAGAAAGCTGTTGATGGAACTTGTCCTGACTATTGGAGACCTAATATGTCCACACCACTTGTTAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCCACTACTACAGAAGCTGCTAAGGCTGTTGGTAAAGTACTGCCTGACTTGGATGGCAAATTAACCGGAATGTCATTCCGTGTTCCTTCTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGGCTAGAAAAGCCGGCTACCTATGAGGAAATAAAAGCTGCCATCAAGGAAGAGTCTGAGGGAAAGCTGAAGGGGATCTTGGGTTACACTGAAGATGATGTGGTCTCTGCTGACTTTGAGCGTGACAACAGGTCAAGTATTTTTGATGCAAAGGCTGGAATTGCTTTGAACGATAACTTCCACAAGCTGGTAGCTTGGTACGACAACGAGTGGGGATACAGCACTCGCATTGTTGACTTGGTTTGCCACATGGCTTCAGTTGATTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

339

Amino Acids

37.47

Weight (kDa)

5.28

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_C PF02800 100 - 125 9.3e-06 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 193 - 315 9.6e-49 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 931
AccI GTMKAC 1 cut(s) 732
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 827
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 3 cut(s) 833, 855, 984
AfaI GTAC 2 cut(s) 663, 944
AfiI CCNNNNNNNGG 4 cut(s) 134, 170, 313, 931
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 4 cut(s) 7, 448, 500, 913
AhdI GACNNNNNGTC 1 cut(s) 874
AjuI GAANNNNNNNTTGG 2 cut(s) 806, 838
Alw21I GWGCWC 2 cut(s) 214, 359
Alw26I GTCTC 2 cut(s) 550, 853
AlwI GGATC 1 cut(s) 827
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 2 cut(s) 136, 415
ApeKI GCWGC 4 cut(s) 481, 605, 641, 782
ApoI RAATTY 1 cut(s) 486
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 124, 137
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 85, 445
AvaII GGWCC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 464
Bbv12I GWGCWC 2 cut(s) 214, 359
BbvI GCAGC 4 cut(s) 493, 592, 628, 769
BccI CCATC 4 cut(s) 476, 527, 671, 794
BciVI GTATCC 1 cut(s) 953
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 550, 853
BfaI CTAG 2 cut(s) 279, 749
BfmI CTRYAG 1 cut(s) 633
BfrI CTTAAG 1 cut(s) 53
BfuI GTATCC 1 cut(s) 953
BisI GCNGC 5 cut(s) 136, 482, 606, 642, 783
BlsI GCNGC 5 cut(s) 137, 483, 607, 643, 784
BmcAI AGTACT 1 cut(s) 663
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 124
BmeRI GACNNNNNGTC 1 cut(s) 874
BmgT120I GGNCC 2 cut(s) 124, 137
BmiI GGNNCC 2 cut(s) 126, 466
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 150, 880
Bpu10I CCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 140
BsaI GGTCTC 2 cut(s) 550, 853
BsaJI CCNNGG 1 cut(s) 128
BsaWI WCCGGW 2 cut(s) 272, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 170, 313, 931
Bse118I RCCGGY 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 165, 682
BseLI CCNNNNNNNGG 4 cut(s) 134, 170, 313, 931
BseMII CTCAG 1 cut(s) 792
BseXI GCAGC 4 cut(s) 493, 592, 628, 769
BshFI GGCC 2 cut(s) 138, 417
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 2 cut(s) 214, 359
BsiSI CCGG 4 cut(s) 140, 273, 690, 758
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 4 cut(s) 134, 170, 313, 931
BsmAI GTCTC 2 cut(s) 550, 853
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 138, 417
Bso31I GGTCTC 2 cut(s) 550, 853
Bsp1286I GDGCHC 2 cut(s) 214, 359
Bsp143I GATC 1 cut(s) 819
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 138, 417
BspCNI CTCAG 1 cut(s) 793
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 126, 466
BspPI GGATC 1 cut(s) 827
BspQI GCTCTTC 1 cut(s) 595
BspT107I GGYRCC 1 cut(s) 464
BspTI CTTAAG 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 550, 853
BsrFI RCCGGY 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 757
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 1 cut(s) 819
BssT1I CCWWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 19, 361, 742
Bst6I CTCTTC 2 cut(s) 595, 789
BstAFI CTTAAG 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 505, 759
BstDEI CTNAG 3 cut(s) 177, 645, 801
BstENI CCTNNNNNAGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 165, 682
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 1 cut(s) 822
BstMAI GTCTC 2 cut(s) 550, 853
BstMBI GATC 1 cut(s) 819
BstMWI GCNNNNNNNGC 4 cut(s) 308, 647, 754, 905
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 633
BstV1I GCAGC 4 cut(s) 493, 592, 628, 769
BstX2I RGATCY 1 cut(s) 819
BstYI RGATCY 1 cut(s) 819
BsuI GTATCC 1 cut(s) 953
BsuRI GGCC 2 cut(s) 138, 417
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 165, 682
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 4 cut(s) 192, 357, 747, 831
Cac8I GCNNGC 2 cut(s) 505, 759
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 757
Cfr13I GGNCC 2 cut(s) 124, 137
Csp6I GTAC 2 cut(s) 662, 943
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 5 cut(s) 23, 30, 68, 323, 994
CviQI GTAC 2 cut(s) 662, 943
DdeI CTNAG 3 cut(s) 177, 645, 801
DpnI GATC 1 cut(s) 821
DpnII GATC 1 cut(s) 819
DriI GACNNNNNGTC 1 cut(s) 874
Eam1104I CTCTTC 2 cut(s) 595, 789
Eam1105I GACNNNNNGTC 1 cut(s) 874
EarI CTCTTC 2 cut(s) 595, 789
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 1 cut(s) 417
Eco31I GGTCTC 2 cut(s) 550, 853
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 3 cut(s) 833, 855, 984
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 5 cut(s) 26, 33, 71, 326, 997
FaiI YATR 9 cut(s) 24, 31, 69, 324, 566, 612, 768, 995, 1015
FalI AAGNNNNNCTT 4 cut(s) 592, 624, 806, 838
FaqI GGGAC 1 cut(s) 110
FatI CATG 5 cut(s) 22, 29, 67, 322, 993
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 5 cut(s) 136, 482, 606, 642, 783
FokI GGATG 2 cut(s) 172, 689
Fsp4HI GCNGC 5 cut(s) 136, 482, 606, 642, 783
FspBI CTAG 2 cut(s) 279, 749
GlaI GCGC 1 cut(s) 219
GluI GCNGC 5 cut(s) 136, 482, 606, 642, 783
HaeIII GGCC 2 cut(s) 138, 417
HapII CCGG 4 cut(s) 140, 273, 690, 758
HhaI GCGC 1 cut(s) 220
Hin1II CATG 5 cut(s) 26, 33, 71, 326, 997
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HindIII AAGCTT 2 cut(s) 50, 501
HinfI GANTC 2 cut(s) 797, 1007
HpaII CCGG 4 cut(s) 140, 273, 690, 758
HphI GGTGA 2 cut(s) 85, 445
Hpy166II GTNNAC 5 cut(s) 73, 364, 570, 733, 979
Hpy188I TCNGA 2 cut(s) 351, 802
Hpy188III TCNNGA 3 cut(s) 323, 545, 716
Hpy8I GTNNAC 5 cut(s) 73, 364, 570, 733, 979
HpyAV CCTTC 5 cut(s) 175, 200, 235, 720, 808
HpyCH4III ACNGT 3 cut(s) 19, 361, 742
HpyCH4V TGCA 7 cut(s) 29, 62, 104, 285, 311, 507, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 647, 754, 905
HpyF3I CTNAG 3 cut(s) 177, 645, 801
Hsp92II CATG 5 cut(s) 26, 33, 71, 326, 997
HspAI GCGC 1 cut(s) 218
KroI GCCGGC 1 cut(s) 757
KroNI GCCGGC 1 cut(s) 759
Kzo9I GATC 1 cut(s) 819
LguI GCTCTTC 1 cut(s) 595
LmnI GCTCC 4 cut(s) 142, 173, 217, 307
Lsp1109I GCAGC 4 cut(s) 493, 592, 628, 769
LweI GCATC 2 cut(s) 150, 880
MaeI CTAG 2 cut(s) 279, 749
MaeIII GTNAC 6 cut(s) 80, 91, 190, 451, 827, 866
MalI GATC 1 cut(s) 821
MboI GATC 1 cut(s) 819
MboII GAAGA 6 cut(s) 46, 128, 463, 612, 806, 848
MflI RGATCY 1 cut(s) 819
MhlI GDGCHC 2 cut(s) 214, 359
MluCI AATT 7 cut(s) 37, 405, 443, 486, 594, 683, 903
MlyI GAGTC 1 cut(s) 806
MnlI CCTC 7 cut(s) 115, 174, 337, 424, 738, 763, 796
MroNI GCCGGC 1 cut(s) 757
MseI TTAA 3 cut(s) 54, 582, 686
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 4 cut(s) 140, 273, 690, 758
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 4 cut(s) 308, 647, 754, 905
NaeI GCCGGC 1 cut(s) 759
NciI CCSGG 1 cut(s) 140
NdeII GATC 1 cut(s) 819
NgoMIV GCCGGC 1 cut(s) 757
NlaIII CATG 5 cut(s) 26, 33, 71, 326, 997
NlaIV GGNNCC 2 cut(s) 126, 466
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 4 cut(s) 91, 190, 451, 866
PagI TCATGA 1 cut(s) 322
PceI AGGCCT 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 595
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 759
PfeI GAWTC 1 cut(s) 1007
PflMI CCANNNNNTGG 1 cut(s) 931
PkrI GCNGC 5 cut(s) 137, 483, 607, 643, 784
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 126, 466
PspPI GGNCC 2 cut(s) 124, 137
PspPPI RGGWCCY 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 819
RsaI GTAC 2 cut(s) 663, 944
RsaNI GTAC 2 cut(s) 662, 943
SapI GCTCTTC 1 cut(s) 595
SaqAI TTAA 3 cut(s) 54, 582, 686
SatI GCNGC 5 cut(s) 136, 482, 606, 642, 783
Sau3AI GATC 1 cut(s) 819
Sau96I GGNCC 2 cut(s) 124, 137
ScaI AGTACT 1 cut(s) 663
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 2 cut(s) 214, 359
SfaNI GCATC 2 cut(s) 150, 880
SfcI CTRYAG 1 cut(s) 633
SinI GGWCC 1 cut(s) 124
SmlI CTYRAG 2 cut(s) 53, 476
SmoI CTYRAG 2 cut(s) 53, 476
Sse9I AATT 7 cut(s) 37, 405, 443, 486, 594, 683, 903
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 1 cut(s) 135
SspMI CTAG 2 cut(s) 279, 749
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 3 cut(s) 19, 361, 742
TasI AATT 7 cut(s) 37, 405, 443, 486, 594, 683, 903
TatI WGTACW 1 cut(s) 661
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 1007
Tru1I TTAA 3 cut(s) 54, 582, 686
Tru9I TTAA 3 cut(s) 54, 582, 686
TscAI CASTG 4 cut(s) 199, 364, 747, 838
TseFI GTSAC 4 cut(s) 91, 190, 451, 866
TseI GCWGC 4 cut(s) 481, 605, 641, 782
Tsp45I GTSAC 4 cut(s) 91, 190, 451, 866
TspDTI ATGAA 3 cut(s) 11, 311, 339
TspGWI ACGGA 1 cut(s) 692
TspRI CASTG 4 cut(s) 199, 364, 747, 838
Van91I CCANNNNNTGG 1 cut(s) 931
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 311
XapI RAATTY 1 cut(s) 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 732
XspI CTAG 2 cut(s) 279, 749
ZrmI AGTACT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.