Rh2BG668500

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000502
Physical Location & Seq
Forward (+)
88044546 .. 88046168
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG668500.1

Sequence Viewer

Length: 591 bp
ATGGCGAAGATCAAGATTGGCATAAATGGATTCGGAAGGATTGGCCGGTTGGTGGCCAGAGTTGCTCTGCAGAGAGATGACATCGAACTCGTTGCCATTAACGATCCTTTCTTGACTGCTGATCACATGAGATACATGTTTAAGTACGACAGTGTTCATGGGCAGTGGAAGCATGGCGAGCTTAAGGTTAAGGATGAAAGCACACTTCTCTTTGGTGATAAGCCCGTTAAAGTTTTTGATTCTAGTTCTTTACTTACCTTACCTGATGAAATCCCATGGGGCGATTCTGGTGCTGAATTTGTCGTTGAGTCCTCCGGAGTTTACACAGATCGGGAGAGAGCATCTCACCACCTGAGGACTGTTGATAGTCCACTAATGAAAGACTGGAGAGGTGGTAGAGCTGCTGGCCATAACATCATTCCCACTAGTACTGGAGCTGCTGAGGGTGTTGGTAAAGTGCTGCCGGCACTAAATGGTAAGTTGACAGGAATGGCCTTCAGGGTTCCCACTGTTGATGTTTCCGTGGTTGACCTCACAGTGAGACTTGAGAAGAAGGCTACTTATGATGAGATTAAAAATGCTATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

196

Amino Acids

21.57

Weight (kDa)

7.95

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 110 8.9e-31 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 118 - 196 6.2e-32 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 314
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 3 cut(s) 43, 54, 406
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 481
AfaI GTAC 2 cut(s) 146, 430
AfiI CCNNNNNNNGG 1 cut(s) 52
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 135
AhlI ACTAGT 1 cut(s) 425
AluBI AGCT 3 cut(s) 181, 401, 437
AluI AGCT 3 cut(s) 181, 401, 437
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 4 cut(s) 43, 54, 406, 492
ApeKI GCWGC 3 cut(s) 401, 437, 460
ApoI RAATTY 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 227, 338
AxyI CCTNAGG 1 cut(s) 353
BalI TGGCCA 2 cut(s) 56, 408
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 388, 424, 447
BcgI CGANNNNNNTGC 4 cut(s) 74, 108, 272, 306
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 535
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 2 cut(s) 243, 426
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 182
BisI GCNGC 3 cut(s) 402, 438, 461
BlsI GCNGC 3 cut(s) 403, 439, 462
BmcAI AGTACT 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 504
BmsI GCATC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpmI CTGGAG 2 cut(s) 406, 453
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 275, 522
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 2 cut(s) 45, 463
Bse1I ACTGG 2 cut(s) 389, 436
Bse21I CCTNAGG 1 cut(s) 353
BseAI TCCGGA 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 275, 522
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 344, 432
BseNI ACTGG 2 cut(s) 389, 436
BseXI GCAGC 3 cut(s) 388, 424, 447
BshFI GGCC 4 cut(s) 45, 56, 408, 494
BsiSI CCGG 3 cut(s) 46, 315, 464
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 535
BsnI GGCC 4 cut(s) 45, 56, 408, 494
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 4 cut(s) 9, 103, 121, 328
Bsp19I CCATGG 1 cut(s) 275
BspANI GGCC 4 cut(s) 45, 56, 408, 494
BspCNI CTCAG 2 cut(s) 345, 433
BspEI TCCGGA 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 45, 463
BsrI ACTGG 2 cut(s) 389, 436
BssAI RCCGGY 2 cut(s) 45, 463
BssECI CCNNGG 2 cut(s) 275, 522
BssMI GATC 4 cut(s) 9, 103, 121, 328
BssT1I CCWWGG 1 cut(s) 275
Bst4CI ACNGT 4 cut(s) 152, 361, 511, 538
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 179, 406, 465
BstDEI CTNAG 2 cut(s) 353, 441
BstDSI CCRYGG 2 cut(s) 275, 522
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 4 cut(s) 12, 106, 124, 331
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 4 cut(s) 9, 103, 121, 328
BstMWI GCNNNNNNNGC 3 cut(s) 62, 169, 178
BstNSI RCATGY 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 388, 424, 447
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 4 cut(s) 45, 56, 408, 494
BtgI CCRYGG 2 cut(s) 275, 522
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 4 cut(s) 157, 170, 507, 543
Cac8I GCNNGC 3 cut(s) 179, 406, 465
Cfr10I RCCGGY 2 cut(s) 45, 463
Csp6I GTAC 2 cut(s) 145, 429
CviAII CATG 5 cut(s) 127, 136, 158, 173, 276
CviJI RGCY 9 cut(s) 45, 56, 181, 223, 401, 408, 437, 494, 557
CviKI_1 RGCY 9 cut(s) 45, 56, 181, 223, 401, 408, 437, 494, 557
CviQI GTAC 2 cut(s) 145, 429
DdeI CTNAG 2 cut(s) 353, 441
DpnI GATC 4 cut(s) 11, 105, 123, 330
DpnII GATC 4 cut(s) 9, 103, 121, 328
EaeI YGGCCR 3 cut(s) 43, 54, 406
Eco130I CCWWGG 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 481
Eco81I CCTNAGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 5 cut(s) 130, 139, 161, 176, 279
FaiI YATR 8 cut(s) 23, 128, 137, 159, 174, 277, 411, 564
FatI CATG 5 cut(s) 126, 135, 157, 172, 275
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 402, 438, 461
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 402, 438, 461
FspBI CTAG 2 cut(s) 243, 426
GluI GCNGC 3 cut(s) 402, 438, 461
GsuI CTGGAG 2 cut(s) 406, 453
HaeIII GGCC 4 cut(s) 45, 56, 408, 494
HapII CCGG 3 cut(s) 46, 315, 464
Hin1II CATG 5 cut(s) 130, 139, 161, 176, 279
HincII GTYRAC 2 cut(s) 483, 529
HindII GTYRAC 2 cut(s) 483, 529
HinfI GANTC 4 cut(s) 30, 239, 284, 308
HpaII CCGG 3 cut(s) 46, 315, 464
HphI GGTGA 2 cut(s) 227, 338
Hpy166II GTNNAC 4 cut(s) 322, 371, 483, 529
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 4 cut(s) 13, 112, 315, 332
Hpy8I GTNNAC 4 cut(s) 322, 371, 483, 529
HpyAV CCTTC 3 cut(s) 30, 505, 547
HpyCH4III ACNGT 4 cut(s) 152, 361, 511, 538
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 169, 178
HpyF3I CTNAG 2 cut(s) 353, 441
Hsp92II CATG 5 cut(s) 130, 139, 161, 176, 279
Kpn2I TCCGGA 1 cut(s) 314
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 4 cut(s) 9, 103, 121, 328
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 3 cut(s) 388, 424, 447
LweI GCATC 1 cut(s) 350
MaeI CTAG 2 cut(s) 243, 426
MalI GATC 4 cut(s) 11, 105, 123, 330
MboI GATC 4 cut(s) 9, 103, 121, 328
MboII GAAGA 2 cut(s) 19, 562
MlsI TGGCCA 2 cut(s) 56, 408
MluCI AATT 1 cut(s) 296
MluNI TGGCCA 2 cut(s) 56, 408
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 5 cut(s) 322, 348, 383, 436, 542
Mox20I TGGCCA 2 cut(s) 56, 408
MroI TCCGGA 1 cut(s) 314
MroNI GCCGGC 1 cut(s) 463
MscI TGGCCA 2 cut(s) 56, 408
MseI TTAA 6 cut(s) 99, 141, 183, 189, 228, 573
Msp20I TGGCCA 2 cut(s) 56, 408
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 3 cut(s) 46, 315, 464
MwoI GCNNNNNNNGC 3 cut(s) 62, 169, 178
NaeI GCCGGC 1 cut(s) 465
NcoI CCATGG 1 cut(s) 275
NdeII GATC 4 cut(s) 9, 103, 121, 328
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 5 cut(s) 130, 139, 161, 176, 279
NlaIV GGNNCC 1 cut(s) 504
NspI RCATGY 1 cut(s) 139
PciI ACATGT 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 30, 239, 284
PkrI GCNGC 3 cut(s) 403, 439, 462
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PscI ACATGT 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 504
PstI CTGCAG 1 cut(s) 72
RsaI GTAC 2 cut(s) 146, 430
RsaNI GTAC 2 cut(s) 145, 429
SaqAI TTAA 6 cut(s) 99, 141, 183, 189, 228, 573
SatI GCNGC 3 cut(s) 402, 438, 461
Sau3AI GATC 4 cut(s) 9, 103, 121, 328
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 1 cut(s) 317
SetI ASST 9 cut(s) 183, 189, 260, 265, 354, 394, 403, 439, 534
SfaNI GCATC 1 cut(s) 350
SfcI CTRYAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 182, 545
SmoI CTYRAG 2 cut(s) 182, 545
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 1 cut(s) 296
SspMI CTAG 2 cut(s) 243, 426
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 4 cut(s) 152, 361, 511, 538
TaqI TCGA 1 cut(s) 84
TasI AATT 1 cut(s) 296
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 3 cut(s) 30, 239, 284
Tru1I TTAA 6 cut(s) 99, 141, 183, 189, 228, 573
Tru9I TTAA 6 cut(s) 99, 141, 183, 189, 228, 573
TscAI CASTG 4 cut(s) 157, 170, 514, 543
TseI GCWGC 3 cut(s) 401, 437, 460
TspDTI ATGAA 4 cut(s) 146, 210, 282, 392
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 4 cut(s) 157, 170, 514, 543
Vha464I CTTAAG 1 cut(s) 182
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 139
XspI CTAG 2 cut(s) 243, 426
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.