Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004033.1

Orthogroup ID

OG0000502

Physical Location & Seq

Genomic Coordinates Forward (+)

88042 .. 92254

Gene Structure 4213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004033.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgataaagagccttgatcataggagacacatcaagtcattttctcaagcacacatctgggcattctttcgcattcctacttctagggaagaccacgtgcatagctggaccattagaaaatctaaaactggaaaagcccaaaaaagctcacacgagtccgacgtggctttcgaggagtacgctacctttcctcctcctgtgccccgccacgtcacgacaaaaccacctacgcgattgtcacagcctctcatcccctgcttcgagccccaccgcaacaccaacctccacaccccatccaccgtgtcaagcgttgggtttgggcgcaatctgaactgttcaaaggtgcaatcatccgtctttggggcttctatctcaaccgggccgtcttctttacagacaagtagcgccaggagtgtccagcccattaaagcaacagccaccgaacttccacccacgattcagagatcagggagtagtgggaagatcaaagttggaatcaatggttttggtcggattgggcggttggttctacggatagcgaccaccagggatgatatagaagtggtggcagtgaatgatcctttagttgatgctaagtacatggtaagcgtgcagtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

206

Amino Acids

22.71

Weight (kDa)

10.28

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13440 AT1G13440 AT3G04120
fragaria_vesca	FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica	MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica	Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis	pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis	RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata	RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora	Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa	Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha	Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana	Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	232
AciI	CCGC	3 cut(s)	205, 271, 520
AclWI	GGATC	1 cut(s)	572
AcvI	CACGTG	1 cut(s)	97
AfaI	GTAC	3 cut(s)	179, 599, 617
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	1 cut(s)	339
AjiI	CACGTC	2 cut(s)	163, 211
AjnI	CCWGG	2 cut(s)	407, 545
AluBI	AGCT	2 cut(s)	105, 147
AluI	AGCT	2 cut(s)	105, 147
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	2 cut(s)	324, 407
AspS9I	GGNCC	2 cut(s)	108, 380
AsuC2I	CCSGG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	152
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	2 cut(s)	96, 378
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	2 cut(s)	409, 547
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	408
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	3 cut(s)	379, 409, 547
Bme18I	GGWCC	1 cut(s)	108
BmgBI	CACGTC	2 cut(s)	163, 211
BmgT120I	GGNCC	2 cut(s)	108, 380
BmrFI	CCNGG	3 cut(s)	379, 409, 547
BmsI	GCATC	1 cut(s)	580
BpiI	GAAGAC	2 cut(s)	96, 378
BpuEI	CTTGAG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	409, 547
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	4 cut(s)	249, 293, 350, 556
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	2 cut(s)	183, 188
BseSI	GKGCMC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	2 cut(s)	62, 72
BsnI	GGCC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	204, 267
Bsp143I	GATC	4 cut(s)	16, 464, 483, 577
BspACI	CCGC	3 cut(s)	205, 271, 520
BspANI	GGCC	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	4 cut(s)	16, 464, 483, 577
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	409, 547
Bst4CI	ACNGT	2 cut(s)	301, 335
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	611
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	4 cut(s)	249, 293, 350, 556
BstFNI	CGCG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	2 cut(s)	324, 407
BstKTI	GATC	4 cut(s)	19, 467, 486, 580
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	4 cut(s)	16, 464, 483, 577
BstNI	CCWGG	2 cut(s)	409, 547
BstSCI	CCNGG	3 cut(s)	377, 407, 545
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	232
BstV2I	GAAGAC	2 cut(s)	96, 378
BsuRI	GGCC	1 cut(s)	382
BtrI	CACGTC	2 cut(s)	163, 211
BtsCI	GGATG	4 cut(s)	249, 293, 350, 556
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	1 cut(s)	611
CfoI	GCGC	2 cut(s)	324, 407
Cfr13I	GGNCC	2 cut(s)	108, 380
Csp6I	GTAC	3 cut(s)	178, 598, 616
CviAII	CATG	1 cut(s)	601
CviQI	GTAC	3 cut(s)	178, 598, 616
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	4 cut(s)	18, 466, 485, 579
DpnII	GATC	4 cut(s)	16, 464, 483, 577
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	108
Eco72I	CACGTG	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	407, 545
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	1 cut(s)	604
FaiI	YATR	4 cut(s)	21, 102, 557, 602
FatI	CATG	1 cut(s)	600
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	16
FokI	GGATG	4 cut(s)	236, 280, 337, 563
FriOI	GRGCYC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	2 cut(s)	323, 406
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	2 cut(s)	324, 407
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	2 cut(s)	322, 405
HinP1I	GCGC	2 cut(s)	322, 405
HinfI	GANTC	3 cut(s)	155, 457, 495
HpaII	CCGG	1 cut(s)	378
Hpy188I	TCNGA	4 cut(s)	160, 330, 462, 513
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	301, 335
HpyCH4IV	ACGT	3 cut(s)	96, 162, 210
HpyCH4V	TGCA	3 cut(s)	100, 346, 613
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	3 cut(s)	96, 162, 210
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	2 cut(s)	322, 405
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	16, 464, 483, 577
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	3 cut(s)	96, 162, 210
MaeIII	GTNAC	2 cut(s)	211, 237
MalI	GATC	4 cut(s)	18, 466, 485, 579
MboI	GATC	4 cut(s)	16, 464, 483, 577
MboII	GAAGA	3 cut(s)	101, 378, 493
MhlI	GDGCHC	2 cut(s)	204, 267
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	3 cut(s)	183, 472, 491
MnlI	CCTC	5 cut(s)	166, 201, 204, 255, 293
MseI	TTAA	1 cut(s)	426
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	3 cut(s)	379, 409, 547
Mva1269I	GAATGC	2 cut(s)	62, 72
MvaI	CCWGG	2 cut(s)	409, 547
MvnI	CGCG	1 cut(s)	232
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	16, 464, 483, 577
NlaIII	CATG	1 cut(s)	604
NmuCI	GTSAC	2 cut(s)	211, 237
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 168
PctI	GAATGC	2 cut(s)	62, 72
PfeI	GAWTC	2 cut(s)	457, 495
PleI	GAGTC	1 cut(s)	163
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	407, 545
PspCI	CACGTG	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	407, 545
PspPI	GGNCC	2 cut(s)	108, 380
RsaI	GTAC	3 cut(s)	179, 599, 617
RsaNI	GTAC	3 cut(s)	178, 598, 616
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	4 cut(s)	16, 464, 483, 577
Sau96I	GGNCC	2 cut(s)	108, 380
ScaI	AGTACT	1 cut(s)	617
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	379, 409, 547
SduI	GDGCHC	2 cut(s)	204, 267
SetI	ASST	9 cut(s)	99, 107, 149, 165, 188, 213, 229, 285, 345
SfaNI	GCATC	1 cut(s)	580
SinI	GGWCC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
SsiI	CCGC	3 cut(s)	205, 271, 520
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	377, 407, 545
TaaI	ACNGT	2 cut(s)	301, 335
TaiI	ACGT	3 cut(s)	99, 165, 213
TaqI	TCGA	2 cut(s)	171, 261
TatI	WGTACW	2 cut(s)	597, 615
TfiI	GAWTC	2 cut(s)	457, 495
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	2 cut(s)	211, 237
Tsp45I	GTSAC	2 cut(s)	211, 237
TspGWI	ACGGA	2 cut(s)	343, 547
TspRI	CASTG	1 cut(s)	576
VpaK11BI	GGWCC	1 cut(s)	108
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.