RchiOBHm_Chr2g0174401

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000502
Physical Location & Seq
Forward (+)
86975299 .. 86980631
5333 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54155

Sequence Viewer

Length: 1104 bp
ATGTCCTTCTCCACAAAATCACAGATGAATAGTAATGAGAGACTGAGGGAGATGAATACACATGAAAGCTGCCGAAATACTAAGACAGTCTATTTGCATTACATCAATTGTCTTGATCTGATGTTATGTGGTGAAGGATTTGGAAGAATCGGCCGCTTGGTGACAAGGGTTGCTCTACAAAGAGATGATATCGAAATAGTTGGTATAAATGATCCAAACATCGATGCCAAGTATATGATCTACATGTTTAAGTACGATAGTGTTCACGGTAGGTGGAAGCACCAACATGAACTTTCGCTTAAGGACGAGAAGACCATTCTCTTTGGTGACCACCCAGTTAGAATTTTTGATAGCAGGGATCCCGCGTACATCCCATGGCAAGAGGTCGATGCTGAATTTGTGGTTGAGGCCTCTGGAAATATGACGGATCATGCCAGAGCTGCTCTCCATATGCAGTATGGTGCAAGGAAGGTTGTAATTACAGCTCCAAGTAGCGATGCTCCTATGTTCGTTGTAGGTGTAAATGAGAAGGAGTACACTCCAGATCTTAAAGTTGTTTCTAATGCAAGCTGTGCTATCAACTGTCTTGCTCCATTGGCAAAGGTTATCCATGAGAAATTCGGAATTGTGGAGGGTCTAATGACTACGGTCCACTCTATTACTGCTTTTCAAAAAGCCGTCGATGCACCATGTCAGAAAGACTGGAGAGTCGGTAGAGCTGCTGGGCGCAACATCATTCCTAGCTCCAATACTGCTAGGAATGATGTCAAGCTAGCCCTTTCTGGTGTTGGTAAAGTGCTGCCGGCACTGGAAGGGAAGCTGACAGGAATGGCCTTCTGCATTCCCACTGTTGATGTTTCTGTGGTTGACCTCACTGTGAGACTTGAGAAGCAGGCTACTTATGATGAGATCAAAAATGCTATCAAGACAGAATCTGAGGGTAGCCTGAAAGGAATCCTTGGATACACTGATGATGATGTGGTTTCCACCGACTTTTTAGGTGACAATAGGTCGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTCAAGCTTGTCTCTTGGTATGATAACGAATGGGCTTATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

367

Amino Acids

40.92

Weight (kDa)

5.96

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 45 - 143 5.1e-29 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 196 - 360 4.9e-60 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 707, 1058
AccII CGCG 1 cut(s) 365
AciI CCGC 2 cut(s) 154, 363
AclWI GGATC 4 cut(s) 206, 353, 366, 435
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 3 cut(s) 342, 395, 617
AfaI GTAC 3 cut(s) 254, 368, 536
AflII CTTAAG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 2 cut(s) 671, 1048
AhdI GACNNNNNGTC 1 cut(s) 1009
AluBI AGCT 9 cut(s) 69, 440, 485, 570, 719, 744, 772, 820, 1066
AluI AGCT 9 cut(s) 69, 440, 485, 570, 719, 744, 772, 820, 1066
Alw26I GTCTC 3 cut(s) 34, 874, 1075
AlwI GGATC 4 cut(s) 206, 353, 366, 435
AlwNI CAGNNNCTG 1 cut(s) 935
AoxI GGCC 3 cut(s) 151, 408, 831
ApeKI GCWGC 4 cut(s) 69, 440, 719, 799
ApoI RAATTY 3 cut(s) 342, 395, 617
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
AspLEI GCGC 1 cut(s) 729
AspS9I GGNCC 1 cut(s) 649
AsuHPI GGTGA 4 cut(s) 143, 172, 338, 1013
AsuNHI GCTAGC 1 cut(s) 772
AvaII GGWCC 1 cut(s) 649
BamHI GGATCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 4 cut(s) 56, 427, 706, 786
BceAI ACGGC 1 cut(s) 662
BciVI GTATCC 1 cut(s) 956
BcoDI GTCTC 3 cut(s) 34, 874, 1075
BfaI CTAG 3 cut(s) 741, 756, 773
BfrI CTTAAG 1 cut(s) 299
BfuI GTATCC 1 cut(s) 956
BglII AGATCT 1 cut(s) 544
BisI GCNGC 5 cut(s) 70, 154, 441, 720, 800
BlsI GCNGC 5 cut(s) 71, 155, 442, 721, 801
Bme18I GGWCC 1 cut(s) 649
BmeRI GACNNNNNGTC 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 649
BmiI GGNNCC 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 5 cut(s) 214, 379, 487, 673, 1015
BmtI GCTAGC 1 cut(s) 776
BmuI ACTGGG 1 cut(s) 329
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 429, 461
BpmI CTGGAG 2 cut(s) 525, 724
BpuEI CTTGAG 1 cut(s) 905
Bsa29I ATCGAT 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 374, 958, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 3 cut(s) 335, 707, 813
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 374, 958, 1029
BseGI GGATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 35, 927
BseNI ACTGG 3 cut(s) 335, 707, 813
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 4 cut(s) 56, 427, 706, 786
BseYI CCCAGC 1 cut(s) 722
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 3 cut(s) 153, 410, 833
BshVI ATCGAT 1 cut(s) 222
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 803
BsmAI GTCTC 3 cut(s) 34, 874, 1075
BsmI GAATGC 1 cut(s) 840
BsnI GGCC 3 cut(s) 153, 410, 833
Bsp143I GATC 7 cut(s) 115, 211, 237, 358, 427, 544, 909
Bsp19I CCATGG 1 cut(s) 374
BspACI CCGC 2 cut(s) 154, 363
BspANI GGCC 3 cut(s) 153, 410, 833
BspCNI CTCAG 2 cut(s) 36, 928
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 360
BspOI GCTAGC 1 cut(s) 776
BspPI GGATC 4 cut(s) 206, 353, 366, 435
BspTI CTTAAG 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 802
BsrI ACTGG 3 cut(s) 335, 707, 813
BssAI RCCGGY 1 cut(s) 802
BssECI CCNNGG 3 cut(s) 374, 958, 1029
BssMI GATC 7 cut(s) 115, 211, 237, 358, 427, 544, 909
BssT1I CCWWGG 3 cut(s) 374, 958, 1029
Bst4CI ACNGT 6 cut(s) 88, 269, 584, 649, 850, 877
BstAFI CTTAAG 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 572
BstC8I GCNNGC 4 cut(s) 568, 774, 804, 894
BstDEI CTNAG 3 cut(s) 44, 81, 936
BstDSI CCRYGG 1 cut(s) 374
BstEII GGTNACC 1 cut(s) 326
BstF5I GGATG 1 cut(s) 369
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 729
BstKTI GATC 7 cut(s) 118, 214, 240, 361, 430, 547, 912
BstMAI GTCTC 3 cut(s) 34, 874, 1075
BstMBI GATC 7 cut(s) 115, 211, 237, 358, 427, 544, 909
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 5 cut(s) 440, 572, 596, 683, 1040
BstNSI RCATGY 1 cut(s) 247
BstPAI GACNNNNGTC 1 cut(s) 647
BstPI GGTNACC 1 cut(s) 326
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 4 cut(s) 56, 427, 706, 786
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 2 cut(s) 358, 544
BstYI RGATCY 2 cut(s) 358, 544
BstZI CGGCCG 1 cut(s) 151
Bsu15I ATCGAT 1 cut(s) 222
BsuI GTATCC 1 cut(s) 956
BsuRI GGCC 3 cut(s) 153, 410, 833
BsuTUI ATCGAT 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 374
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 1 cut(s) 369
BtsIMutI CAGTG 4 cut(s) 806, 846, 873, 966
Cac8I GCNNGC 4 cut(s) 568, 774, 804, 894
CaiI CAGNNNCTG 1 cut(s) 935
CfoI GCGC 1 cut(s) 729
Cfr10I RCCGGY 1 cut(s) 802
Cfr13I GGNCC 1 cut(s) 649
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 3 cut(s) 253, 367, 535
CviAII CATG 7 cut(s) 62, 244, 287, 375, 431, 611, 690
CviQI GTAC 3 cut(s) 253, 367, 535
DdeI CTNAG 3 cut(s) 44, 81, 936
DpnI GATC 7 cut(s) 117, 213, 239, 360, 429, 546, 911
DpnII GATC 7 cut(s) 115, 211, 237, 358, 427, 544, 909
DrdI GACNNNNNNGTC 2 cut(s) 707, 1058
DriI GACNNNNNGTC 1 cut(s) 1009
DseDI GACNNNNNNGTC 2 cut(s) 707, 1058
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 1009
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 3 cut(s) 374, 958, 1029
Eco147I AGGCCT 1 cut(s) 410
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 649
Eco52I CGGCCG 1 cut(s) 151
Eco91I GGTNACC 1 cut(s) 326
EcoO65I GGTNACC 1 cut(s) 326
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 3 cut(s) 374, 958, 1029
ErhI CCWWGG 3 cut(s) 374, 958, 1029
FaeI CATG 7 cut(s) 65, 247, 290, 378, 434, 614, 693
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FatI CATG 7 cut(s) 61, 243, 286, 374, 430, 610, 689
FauI CCCGC 1 cut(s) 370
FauNDI CATATG 1 cut(s) 450
Fnu4HI GCNGC 5 cut(s) 70, 154, 441, 720, 800
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 5 cut(s) 70, 154, 441, 720, 800
FspBI CTAG 3 cut(s) 741, 756, 773
GlaI GCGC 1 cut(s) 728
GluI GCNGC 5 cut(s) 70, 154, 441, 720, 800
GsaI CCCAGC 1 cut(s) 726
GsuI CTGGAG 2 cut(s) 525, 724
HaeIII GGCC 3 cut(s) 153, 410, 833
HapII CCGG 1 cut(s) 803
HhaI GCGC 1 cut(s) 729
Hin1II CATG 7 cut(s) 65, 247, 290, 378, 434, 614, 693
Hin6I GCGC 1 cut(s) 727
HinP1I GCGC 1 cut(s) 727
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 1 cut(s) 1064
HinfI GANTC 4 cut(s) 147, 708, 932, 954
HpaII CCGG 1 cut(s) 803
HphI GGTGA 4 cut(s) 143, 172, 338, 1013
Hpy166II GTNNAC 4 cut(s) 265, 537, 652, 868
Hpy188I TCNGA 4 cut(s) 120, 623, 696, 937
Hpy188III TCNNGA 4 cut(s) 113, 414, 542, 925
Hpy8I GTNNAC 4 cut(s) 265, 537, 652, 868
Hpy99I CGWCG 1 cut(s) 683
HpyAV CCTTC 6 cut(s) 16, 128, 463, 523, 806, 844
HpyCH4III ACNGT 6 cut(s) 88, 269, 584, 649, 850, 877
HpyCH4V TGCA 6 cut(s) 97, 454, 464, 566, 686, 840
HpyF10VI GCNNNNNNNGC 5 cut(s) 440, 572, 596, 683, 1040
HpyF3I CTNAG 3 cut(s) 44, 81, 936
Hsp92II CATG 7 cut(s) 65, 247, 290, 378, 434, 614, 693
HspAI GCGC 1 cut(s) 727
KroI GCCGGC 1 cut(s) 802
KroNI GCCGGC 1 cut(s) 804
Kzo9I GATC 7 cut(s) 115, 211, 237, 358, 427, 544, 909
LmnI GCTCC 4 cut(s) 490, 505, 595, 749
Lsp1109I GCAGC 4 cut(s) 56, 427, 706, 786
LweI GCATC 5 cut(s) 214, 379, 487, 673, 1015
MaeI CTAG 3 cut(s) 741, 756, 773
MaeIII GTNAC 3 cut(s) 160, 326, 1001
MalI GATC 7 cut(s) 117, 213, 239, 360, 429, 546, 911
MboI GATC 7 cut(s) 115, 211, 237, 358, 427, 544, 909
MboII GAAGA 2 cut(s) 156, 322
MfeI CAATTG 1 cut(s) 106
MflI RGATCY 2 cut(s) 358, 544
MluCI AATT 7 cut(s) 106, 342, 395, 477, 617, 624, 1038
MlyI GAGTC 1 cut(s) 717
MnlI CCTC 7 cut(s) 39, 376, 400, 421, 625, 881, 931
MroNI GCCGGC 1 cut(s) 802
MseI TTAA 3 cut(s) 249, 300, 549
MslI CAYNNNNRTG 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 1 cut(s) 803
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 840
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 5 cut(s) 440, 572, 596, 683, 1040
NaeI GCCGGC 1 cut(s) 804
NcoI CCATGG 1 cut(s) 374
NdeI CATATG 1 cut(s) 450
NdeII GATC 7 cut(s) 115, 211, 237, 358, 427, 544, 909
NgoMIV GCCGGC 1 cut(s) 802
NheI GCTAGC 1 cut(s) 772
NlaIII CATG 7 cut(s) 65, 247, 290, 378, 434, 614, 693
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 3 cut(s) 160, 326, 1001
NspI RCATGY 1 cut(s) 247
PceI AGGCCT 1 cut(s) 410
PciI ACATGT 1 cut(s) 243
PctI GAATGC 1 cut(s) 840
PdiI GCCGGC 1 cut(s) 804
PfeI GAWTC 3 cut(s) 147, 932, 954
PkrI GCNGC 5 cut(s) 71, 155, 442, 721, 801
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
PscI ACATGT 1 cut(s) 243
PshAI GACNNNNGTC 1 cut(s) 647
PspEI GGTNACC 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 722
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 935
PsuI RGATCY 2 cut(s) 358, 544
RsaI GTAC 3 cut(s) 254, 368, 536
RsaNI GTAC 3 cut(s) 253, 367, 535
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 3 cut(s) 249, 300, 549
SatI GCNGC 5 cut(s) 70, 154, 441, 720, 800
Sau3AI GATC 7 cut(s) 115, 211, 237, 358, 427, 544, 909
Sau96I GGNCC 1 cut(s) 649
SchI GAGTC 1 cut(s) 717
SfaNI GCATC 5 cut(s) 214, 379, 487, 673, 1015
SinI GGWCC 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 299, 884
SmoI CTYRAG 2 cut(s) 299, 884
Sse9I AATT 7 cut(s) 106, 342, 395, 477, 617, 624, 1038
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 2 cut(s) 154, 363
SspMI CTAG 3 cut(s) 741, 756, 773
StuI AGGCCT 1 cut(s) 410
StyI CCWWGG 3 cut(s) 374, 958, 1029
TaaI ACNGT 6 cut(s) 88, 269, 584, 649, 850, 877
TaqI TCGA 6 cut(s) 192, 222, 387, 681, 1013, 1023
TasI AATT 7 cut(s) 106, 342, 395, 477, 617, 624, 1038
TatI WGTACW 1 cut(s) 534
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 147, 932, 954
Tru1I TTAA 3 cut(s) 249, 300, 549
Tru9I TTAA 3 cut(s) 249, 300, 549
TscAI CASTG 4 cut(s) 813, 853, 880, 973
TseFI GTSAC 3 cut(s) 160, 326, 1001
TseI GCWGC 4 cut(s) 69, 440, 719, 799
Tsp45I GTSAC 3 cut(s) 160, 326, 1001
TspDTI ATGAA 4 cut(s) 41, 68, 78, 303
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 4 cut(s) 813, 853, 880, 973
Vha464I CTTAAG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 649
XapI RAATTY 3 cut(s) 342, 395, 617
XceI RCATGY 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 3 cut(s) 741, 756, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.