RchiOBHm_Chr2g0174391

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000502
Physical Location & Seq
Forward (+)
86971233 .. 86975239
4007 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54154

Sequence Viewer

Length: 1017 bp
ATGAATTTCTTACATCATCGATTCGGAAGGATTGGCCGGTTGGTGGCCAGAGTTGCTCTGCAGAGAGATGACATTGAACTCGTTGCCATTAACGATCCTTTCTTGACTGCTGATCACATGAGATACATGTTTAAGTACGACAGTGTTCATGGGCAGTGGAAGCATGGCGAGCTTAAGGTTAAGGATGAAAGCACACTTCTCTTTGGTGATAAGCCCGTTAAAGTTTTTGATTCTAGTTCTTTACTTACCTTACCTGATGAAATCCCATGGGGCGATTCTGGTGCTGAATTTGTCGTTGAGTCCTCCGGAGTTTACACAGATCGGGAGAGAGCATCTCACCACCTGAGGACTGGTGCAAAGAAAGTTATCATTTCTGCCCCAAGTGATGATGTTCCCATGTTTGTTGTGGGTGTTAATGAGAAGGACTACACTCCAGATCTTAACGTTGTTTCAAATGCAAGCTGCACTACTAACTGTCTTGCTCCACTGGCAAAGGTTATCCACGATAAATTTGGTATCATAGAGGGTCTTATGACCACTGTCCATTCTATTACTGCTACTCAAAAGACTGTTGATAGTCCACTAATGAAAGACTGGAGAGGTGGTAGAGCTGCTGGCCATAACATCATTCCCACTAGTACTGGAGCTGCTGAGGGTGTTGGTAAAGTGCTGCCGGCACTAAATGGGAAGTTGACAGGAATGGCCTTCAGGGTTCCCACAGTTGATGTTTCCGTGGTTGACCTCACAGTGAGACTTGAGAAGAAGGCTACTTATGATGAGATTAAAAATGCTATCAAGGAAGAATCTGAGGGTAACCTAAAGGGAATCCTCGGATATATGGACGATGATTTAGTGTCCACTGACTTTGTGGATAACCACAGGTCAAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCGCGTGGTATGACAATGAATGGGGTTACAGCTCACGAGTCATCGACTTGATCTGTCACATGGCCACAGTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

338

Amino Acids

37.25

Weight (kDa)

5.73

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 8 - 107 4.8e-25 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 160 - 317 2.1e-69 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 944
AccIII TCCGGA 1 cut(s) 305
AclI AACGTT 1 cut(s) 444
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 4 cut(s) 34, 45, 616, 1002
AcsI RAATTY 3 cut(s) 4, 287, 509
AcuI CTGAAG 1 cut(s) 691
AfaI GTAC 2 cut(s) 137, 640
AfiI CCNNNNNNNGG 1 cut(s) 43
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 3 cut(s) 77, 453, 919
AhlI ACTAGT 1 cut(s) 635
AluBI AGCT 6 cut(s) 172, 462, 611, 647, 937, 972
AluI AGCT 6 cut(s) 172, 462, 611, 647, 937, 972
Alw26I GTCTC 1 cut(s) 745
AlwI GGATC 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 305
AoxI GGCC 5 cut(s) 34, 45, 616, 702, 1002
ApeKI GCWGC 4 cut(s) 462, 611, 647, 670
ApoI RAATTY 3 cut(s) 4, 287, 509
AsuHPI GGTGA 2 cut(s) 218, 329
AxyI CCTNAGG 1 cut(s) 344
BalI TGGCCA 3 cut(s) 47, 618, 1004
BauI CACGAG 1 cut(s) 975
BbvCI CCTCAGC 1 cut(s) 651
BbvI GCAGC 4 cut(s) 449, 598, 634, 657
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 745
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 2 cut(s) 234, 636
BfmI CTRYAG 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 173
BglII AGATCT 1 cut(s) 436
BisI GCNGC 4 cut(s) 463, 612, 648, 671
BlsI GCNGC 4 cut(s) 464, 613, 649, 672
BmcAI AGTACT 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 714
BmsI GCATC 2 cut(s) 341, 886
BoxI GACNNNNGTC 1 cut(s) 539
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 3 cut(s) 417, 616, 663
Bpu10I CCTNAGC 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 776
Bsa29I ATCGAT 1 cut(s) 19
BsaJI CCNNGG 4 cut(s) 266, 732, 829, 900
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 2 cut(s) 36, 673
Bse1I ACTGG 4 cut(s) 355, 492, 599, 646
Bse21I CCTNAGG 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 4 cut(s) 266, 732, 829, 900
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 3 cut(s) 335, 642, 798
BseNI ACTGG 4 cut(s) 355, 492, 599, 646
BseXI GCAGC 4 cut(s) 449, 598, 634, 657
BsgI GTGCAG 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 944
BshFI GGCC 5 cut(s) 36, 47, 618, 704, 1004
BshVI ATCGAT 1 cut(s) 19
BsiSI CCGG 3 cut(s) 37, 306, 674
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 745
BsnI GGCC 5 cut(s) 36, 47, 618, 704, 1004
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 5 cut(s) 94, 112, 319, 436, 990
Bsp19I CCATGG 1 cut(s) 266
BspANI GGCC 5 cut(s) 36, 47, 618, 704, 1004
BspCNI CTCAG 3 cut(s) 336, 643, 799
BspDI ATCGAT 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 305
BspFNI CGCG 1 cut(s) 944
BspLI GGNNCC 1 cut(s) 714
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 173
BsrFI RCCGGY 2 cut(s) 36, 673
BsrI ACTGG 4 cut(s) 355, 492, 599, 646
BssAI RCCGGY 2 cut(s) 36, 673
BssECI CCNNGG 4 cut(s) 266, 732, 829, 900
BssMI GATC 5 cut(s) 94, 112, 319, 436, 990
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 2 cut(s) 266, 900
Bst2BI CACGAG 1 cut(s) 975
Bst4CI ACNGT 7 cut(s) 143, 476, 541, 571, 721, 748, 1009
BstAFI CTTAAG 1 cut(s) 173
BstC8I GCNNGC 4 cut(s) 170, 460, 616, 675
BstDEI CTNAG 3 cut(s) 344, 651, 807
BstDSI CCRYGG 2 cut(s) 266, 732
BstEII GGTNACC 1 cut(s) 812
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 944
BstKTI GATC 5 cut(s) 97, 115, 322, 439, 993
BstMAI GTCTC 1 cut(s) 745
BstMBI GATC 5 cut(s) 94, 112, 319, 436, 990
BstMWI GCNNNNNNNGC 5 cut(s) 53, 160, 169, 488, 911
BstNSI RCATGY 1 cut(s) 130
BstPAI GACNNNNGTC 1 cut(s) 539
BstPI GGTNACC 1 cut(s) 812
BstSFI CTRYAG 1 cut(s) 59
BstUI CGCG 1 cut(s) 944
BstV1I GCAGC 4 cut(s) 449, 598, 634, 657
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 344
BsuRI GGCC 5 cut(s) 36, 47, 618, 704, 1004
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 2 cut(s) 266, 732
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 6 cut(s) 148, 161, 485, 537, 753, 858
Cac8I GCNNGC 4 cut(s) 170, 460, 616, 675
Cfr10I RCCGGY 2 cut(s) 36, 673
ClaI ATCGAT 1 cut(s) 19
Csp6I GTAC 2 cut(s) 136, 639
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 8 cut(s) 118, 127, 149, 164, 267, 397, 1000, 1014
CviQI GTAC 2 cut(s) 136, 639
DdeI CTNAG 3 cut(s) 344, 651, 807
DpnI GATC 5 cut(s) 96, 114, 321, 438, 992
DpnII GATC 5 cut(s) 94, 112, 319, 436, 990
EaeI YGGCCR 4 cut(s) 34, 45, 616, 1002
Eco130I CCWWGG 2 cut(s) 266, 900
Eco57I CTGAAG 1 cut(s) 691
Eco81I CCTNAGG 1 cut(s) 344
Eco91I GGTNACC 1 cut(s) 812
EcoO65I GGTNACC 1 cut(s) 812
EcoT14I CCWWGG 2 cut(s) 266, 900
ErhI CCWWGG 2 cut(s) 266, 900
FaeI CATG 8 cut(s) 121, 130, 152, 167, 270, 400, 1003, 1017
FatI CATG 8 cut(s) 117, 126, 148, 163, 266, 396, 999, 1013
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 4 cut(s) 463, 612, 648, 671
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 4 cut(s) 463, 612, 648, 671
FspBI CTAG 2 cut(s) 234, 636
GluI GCNGC 4 cut(s) 463, 612, 648, 671
GsuI CTGGAG 3 cut(s) 417, 616, 663
HaeIII GGCC 5 cut(s) 36, 47, 618, 704, 1004
HapII CCGG 3 cut(s) 37, 306, 674
Hin1II CATG 8 cut(s) 121, 130, 152, 167, 270, 400, 1003, 1017
HincII GTYRAC 2 cut(s) 693, 739
HindII GTYRAC 2 cut(s) 693, 739
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 7 cut(s) 21, 230, 275, 299, 803, 825, 978
HpaII CCGG 3 cut(s) 37, 306, 674
HphI GGTGA 2 cut(s) 218, 329
Hpy166II GTNNAC 5 cut(s) 313, 581, 693, 739, 858
Hpy188I TCNGA 3 cut(s) 26, 808, 833
Hpy188III TCNNGA 5 cut(s) 103, 306, 323, 434, 975
Hpy8I GTNNAC 5 cut(s) 313, 581, 693, 739, 858
HpyAV CCTTC 4 cut(s) 21, 415, 715, 757
HpyCH4III ACNGT 7 cut(s) 143, 476, 541, 571, 721, 748, 1009
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 4 cut(s) 61, 356, 458, 465
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 160, 169, 488, 911
HpyF3I CTNAG 3 cut(s) 344, 651, 807
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 8 cut(s) 121, 130, 152, 167, 270, 400, 1003, 1017
Kpn2I TCCGGA 1 cut(s) 305
KroI GCCGGC 1 cut(s) 673
KroNI GCCGGC 1 cut(s) 675
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 5 cut(s) 94, 112, 319, 436, 990
LmnI GCTCC 2 cut(s) 487, 644
Lsp1109I GCAGC 4 cut(s) 449, 598, 634, 657
LweI GCATC 2 cut(s) 341, 886
MaeI CTAG 2 cut(s) 234, 636
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 4 cut(s) 812, 965, 995, 1009
MalI GATC 5 cut(s) 96, 114, 321, 438, 992
MboI GATC 5 cut(s) 94, 112, 319, 436, 990
MboII GAAGA 2 cut(s) 772, 812
MflI RGATCY 1 cut(s) 436
MlsI TGGCCA 3 cut(s) 47, 618, 1004
MluCI AATT 4 cut(s) 4, 287, 509, 909
MluNI TGGCCA 3 cut(s) 47, 618, 1004
MlyI GAGTC 2 cut(s) 308, 987
MnlI CCTC 8 cut(s) 313, 339, 517, 593, 646, 752, 802, 839
Mox20I TGGCCA 3 cut(s) 47, 618, 1004
MroI TCCGGA 1 cut(s) 305
MroNI GCCGGC 1 cut(s) 673
MscI TGGCCA 3 cut(s) 47, 618, 1004
MseI TTAA 8 cut(s) 90, 132, 174, 180, 219, 414, 441, 783
Msp20I TGGCCA 3 cut(s) 47, 618, 1004
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 3 cut(s) 37, 306, 674
MvnI CGCG 1 cut(s) 944
MwoI GCNNNNNNNGC 5 cut(s) 53, 160, 169, 488, 911
NaeI GCCGGC 1 cut(s) 675
NcoI CCATGG 1 cut(s) 266
NdeII GATC 5 cut(s) 94, 112, 319, 436, 990
NgoMIV GCCGGC 1 cut(s) 673
NlaIII CATG 8 cut(s) 121, 130, 152, 167, 270, 400, 1003, 1017
NlaIV GGNNCC 1 cut(s) 714
NmuCI GTSAC 1 cut(s) 995
NspI RCATGY 1 cut(s) 130
PciI ACATGT 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 675
PfeI GAWTC 5 cut(s) 21, 230, 275, 803, 825
PkrI GCNGC 4 cut(s) 464, 613, 649, 672
PleI GAGTC 2 cut(s) 307, 986
PpsI GAGTC 2 cut(s) 307, 986
PscI ACATGT 1 cut(s) 126
PshAI GACNNNNGTC 1 cut(s) 539
Psp1406I AACGTT 1 cut(s) 444
PspEI GGTNACC 1 cut(s) 812
PspN4I GGNNCC 1 cut(s) 714
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 2 cut(s) 137, 640
RsaNI GTAC 2 cut(s) 136, 639
SaqAI TTAA 8 cut(s) 90, 132, 174, 180, 219, 414, 441, 783
SatI GCNGC 4 cut(s) 463, 612, 648, 671
Sau3AI GATC 5 cut(s) 94, 112, 319, 436, 990
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 2 cut(s) 308, 987
SfaNI GCATC 2 cut(s) 341, 886
SfcI CTRYAG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 173, 755
SmoI CTYRAG 2 cut(s) 173, 755
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 4 cut(s) 4, 287, 509, 909
SspMI CTAG 2 cut(s) 234, 636
StyI CCWWGG 2 cut(s) 266, 900
TaaI ACNGT 7 cut(s) 143, 476, 541, 571, 721, 748, 1009
TaiI ACGT 1 cut(s) 447
TaqI TCGA 3 cut(s) 19, 894, 984
TasI AATT 4 cut(s) 4, 287, 509, 909
TatI WGTACW 1 cut(s) 638
TfiI GAWTC 5 cut(s) 21, 230, 275, 803, 825
Tru1I TTAA 8 cut(s) 90, 132, 174, 180, 219, 414, 441, 783
Tru9I TTAA 8 cut(s) 90, 132, 174, 180, 219, 414, 441, 783
TscAI CASTG 6 cut(s) 148, 161, 492, 544, 753, 865
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 4 cut(s) 462, 611, 647, 670
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 6 cut(s) 17, 137, 201, 273, 602, 972
TspGWI ACGGA 1 cut(s) 721
TspRI CASTG 6 cut(s) 148, 161, 492, 544, 753, 865
Vha464I CTTAAG 1 cut(s) 173
XapI RAATTY 3 cut(s) 4, 287, 509
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 4 cut(s) 347, 403, 509, 865
XspI CTAG 2 cut(s) 234, 636
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.