FvH4_6g52755

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000502
Physical Location & Seq
Forward (+)
38786486 .. 38788664
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52755.t1

Sequence Viewer

Length: 957 bp
ATGGCCAAGATCAAGATTGTCATAAATGGGTTTGGAAGAATCGGCCGCTTGGTGACTAGGGTTGCTCTACAAAGAGATGACATGGAAATCGTTGCTATAAATGATCCTAATATCAACGCCAAGTATATGATCTACATGTTTAAGTACGACAGTGTTCACGGGAAGTGGAAGCACCACCATGAACTTAAGCTTAAGGATGATAAGACCATTCTCTTTGGTGACCACCCAATTAGAGTTTTTGAGGGCAGGGATCCCTCCTACCTCCCATTGGAAGAGCTCCAGGCTGAATATGTGGTCGAGGCCTCCGGATATATGACGGATTACGCCAGAGCTGCTGCTCATATGCAGTTTGGTGCAAGGAAAGTTGTAATCACAGCTCCAAGTATCGATGCTCCTATGTTCGTTGTAGGTGTAAATGAGAAGGACTACACTCCCGACCTTAAAGTTGTTTCCAATGCAAGCTGTGCTATCAACTGTCTTGCTCCATTGGCAAAGGTTATCCATGAGAAATTCGGTATTGTGGAGGGTCTAATGACCACGGTCCACTCTATGGCTGGTCAGTATGCTGTTGGTAAAGTGCTGCCGGCACTAGATGGGAAACTGAAAGGAATGGCCTTCTGCATTCCCACTGTCGATGTTTCTGTGGTTGACCTCACCGTGAGACTTGAGAAGCAGGCAAGTTATGAAGAGATCAAAAATGCTATCAAGACAGAATCTGAGGGTAGCCTGAAAGGAATCCTTGGATACACAGATGATGATGTGGTTTCCACCGACTTTTTAGGTGACAATAGGTCCAGCATTTTCGATGCCAAGGCTGGAATTGCTCTGAATGACAACTTTGTAAAGCTTGTCTCTTGGTATGACAATGAATGGGCTTATAGCACACGAGTTATCGACTTGATCCGTCACATGGCCTCTGTTAGCCAAGATGAAAGTTCACAGGCAGCTAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

319

Amino Acids

35.24

Weight (kDa)

5.74

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 107 4.6e-31 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 160 - 186 3.6e-07 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 189 - 287 2.6e-36 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 550
AccIII TCCGGA 1 cut(s) 305
AciI CCGC 1 cut(s) 46
AclWI GGATC 4 cut(s) 98, 245, 258, 895
AcoI YGGCCR 2 cut(s) 3, 43
AcsI RAATTY 1 cut(s) 509
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 268, 550, 910
AflII CTTAAG 2 cut(s) 185, 191
AflIII ACRYGT 1 cut(s) 135
AhdI GACNNNNNGTC 1 cut(s) 790
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 7 cut(s) 190, 277, 332, 377, 462, 847, 947
AluI AGCT 7 cut(s) 190, 277, 332, 377, 462, 847, 947
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 2 cut(s) 655, 856
AlwI GGATC 4 cut(s) 98, 245, 258, 895
AlwNI CAGNNNCTG 1 cut(s) 716
Aor13HI TCCGGA 1 cut(s) 305
AoxI GGCC 5 cut(s) 3, 43, 300, 612, 912
ApeKI GCWGC 4 cut(s) 332, 335, 580, 944
ApoI RAATTY 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 541, 792
AsuHPI GGTGA 4 cut(s) 64, 230, 646, 794
AvaII GGWCC 2 cut(s) 541, 792
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 279
BauI CACGAG 1 cut(s) 885
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 319, 322, 567
BccI CCATC 1 cut(s) 587
BciT130I CCWGG 1 cut(s) 281
BciVI GTATCC 1 cut(s) 737
BcoDI GTCTC 2 cut(s) 655, 856
BfaI CTAG 2 cut(s) 57, 590
BfrI CTTAAG 2 cut(s) 185, 191
BfuI GTATCC 1 cut(s) 737
BisI GCNGC 5 cut(s) 46, 333, 336, 581, 945
BlsI GCNGC 5 cut(s) 47, 334, 337, 582, 946
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 2 cut(s) 541, 792
BmeRI GACNNNNNGTC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 541, 792
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 379, 796
BoxI GACNNNNGTC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 686
Bsa29I ATCGAT 1 cut(s) 387
BsaJI CCNNGG 3 cut(s) 537, 739, 810
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 550, 910
Bse118I RCCGGY 1 cut(s) 583
BseAI TCCGGA 1 cut(s) 305
BseBI CCWGG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 3 cut(s) 537, 739, 810
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 3 cut(s) 268, 550, 910
BseMII CTCAG 1 cut(s) 708
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 3 cut(s) 319, 322, 567
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 5 cut(s) 5, 45, 302, 614, 914
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 2 cut(s) 306, 584
BslI CCNNNNNNNGG 3 cut(s) 268, 550, 910
BsmAI GTCTC 2 cut(s) 655, 856
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 5 cut(s) 5, 45, 302, 614, 914
Bsp1286I GDGCHC 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 6 cut(s) 9, 103, 129, 250, 690, 900
BspACI CCGC 1 cut(s) 46
BspANI GGCC 5 cut(s) 5, 45, 302, 614, 914
BspCNI CTCAG 1 cut(s) 709
BspDI ATCGAT 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 4 cut(s) 98, 245, 258, 895
BspQI GCTCTTC 1 cut(s) 267
BspTI CTTAAG 2 cut(s) 185, 191
BsrFI RCCGGY 1 cut(s) 583
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 3 cut(s) 537, 739, 810
BssMI GATC 6 cut(s) 9, 103, 129, 250, 690, 900
BssSI CACGAG 1 cut(s) 885
BssT1I CCWWGG 2 cut(s) 739, 810
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 5 cut(s) 152, 476, 541, 631, 658
Bst6I CTCTTC 2 cut(s) 267, 681
BstAFI CTTAAG 2 cut(s) 185, 191
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 460, 585, 675
BstDEI CTNAG 1 cut(s) 717
BstDSI CCRYGG 1 cut(s) 537
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 6 cut(s) 12, 106, 132, 253, 693, 903
BstMAI GTCTC 2 cut(s) 655, 856
BstMBI GATC 6 cut(s) 9, 103, 129, 250, 690, 900
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 4 cut(s) 332, 464, 488, 821
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 539
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 279
BstV1I GCAGC 3 cut(s) 319, 322, 567
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BstZI CGGCCG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 387
BsuI GTATCC 1 cut(s) 737
BsuRI GGCC 5 cut(s) 5, 45, 302, 614, 914
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 157, 627
Cac8I GCNNGC 3 cut(s) 460, 585, 675
CaiI CAGNNNCTG 1 cut(s) 716
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 2 cut(s) 541, 792
ClaI ATCGAT 1 cut(s) 387
Csp6I GTAC 1 cut(s) 145
CviAII CATG 5 cut(s) 82, 136, 179, 503, 910
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 717
DpnI GATC 6 cut(s) 11, 105, 131, 252, 692, 902
DpnII GATC 6 cut(s) 9, 103, 129, 250, 690, 900
DriI GACNNNNNGTC 1 cut(s) 790
EaeI YGGCCR 2 cut(s) 3, 43
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 267, 681
Eam1105I GACNNNNNGTC 1 cut(s) 790
EarI CTCTTC 2 cut(s) 267, 681
Ecl136II GAGCTC 1 cut(s) 277
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 739, 810
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 541, 792
Eco52I CGGCCG 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 277
Eco91I GGTNACC 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 277
EcoO65I GGTNACC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 739, 810
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 739, 810
FaeI CATG 5 cut(s) 85, 139, 182, 506, 913
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FatI CATG 5 cut(s) 81, 135, 178, 502, 909
FauNDI CATATG 1 cut(s) 342
Fnu4HI GCNGC 5 cut(s) 46, 333, 336, 581, 945
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 5 cut(s) 46, 333, 336, 581, 945
FspBI CTAG 2 cut(s) 57, 590
GluI GCNGC 5 cut(s) 46, 333, 336, 581, 945
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 5 cut(s) 5, 45, 302, 614, 914
HapII CCGG 2 cut(s) 306, 584
Hin1II CATG 5 cut(s) 85, 139, 182, 506, 913
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 2 cut(s) 188, 845
HinfI GANTC 3 cut(s) 39, 713, 735
HpaII CCGG 2 cut(s) 306, 584
HphI GGTGA 4 cut(s) 64, 230, 646, 794
Hpy166II GTNNAC 4 cut(s) 157, 544, 649, 938
Hpy188I TCNGA 2 cut(s) 718, 828
Hpy188III TCNNGA 5 cut(s) 13, 306, 434, 706, 954
Hpy8I GTNNAC 4 cut(s) 157, 544, 649, 938
HpyAV CCTTC 2 cut(s) 415, 625
HpyCH4III ACNGT 5 cut(s) 152, 476, 541, 631, 658
HpyCH4V TGCA 4 cut(s) 346, 356, 458, 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 464, 488, 821
HpyF3I CTNAG 1 cut(s) 717
Hsp92II CATG 5 cut(s) 85, 139, 182, 506, 913
Kpn2I TCCGGA 1 cut(s) 305
KroI GCCGGC 1 cut(s) 583
KroNI GCCGGC 1 cut(s) 585
Kzo9I GATC 6 cut(s) 9, 103, 129, 250, 690, 900
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 4 cut(s) 282, 382, 397, 487
Lsp1109I GCAGC 3 cut(s) 319, 322, 567
LweI GCATC 2 cut(s) 379, 796
MaeI CTAG 2 cut(s) 57, 590
MaeIII GTNAC 4 cut(s) 52, 218, 782, 905
MalI GATC 6 cut(s) 11, 105, 131, 252, 692, 902
MboI GATC 6 cut(s) 9, 103, 129, 250, 690, 900
MboII GAAGA 3 cut(s) 48, 284, 698
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 228, 509, 819, 949
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 9 cut(s) 235, 265, 272, 292, 313, 517, 662, 712, 925
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 305
MroNI GCCGGC 1 cut(s) 583
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 141, 186, 192, 441
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 2 cut(s) 185, 191
MspI CCGG 2 cut(s) 306, 584
MspR9I CCNGG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 621
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 4 cut(s) 332, 464, 488, 821
NaeI GCCGGC 1 cut(s) 585
NdeI CATATG 1 cut(s) 342
NdeII GATC 6 cut(s) 9, 103, 129, 250, 690, 900
NgoMIV GCCGGC 1 cut(s) 583
NlaIII CATG 5 cut(s) 85, 139, 182, 506, 913
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 4 cut(s) 52, 218, 782, 905
NspI RCATGY 1 cut(s) 139
PceI AGGCCT 1 cut(s) 302
PciI ACATGT 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 267
PctI GAATGC 1 cut(s) 621
PdiI GCCGGC 1 cut(s) 585
PfeI GAWTC 3 cut(s) 39, 713, 735
PflMI CCANNNNNTGG 1 cut(s) 550
PkrI GCNGC 5 cut(s) 47, 334, 337, 582, 946
PscI ACATGT 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 279
PspEI GGTNACC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 541, 792
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 177
SacI GAGCTC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 4 cut(s) 141, 186, 192, 441
SatI GCNGC 5 cut(s) 46, 333, 336, 581, 945
Sau3AI GATC 6 cut(s) 9, 103, 129, 250, 690, 900
Sau96I GGNCC 2 cut(s) 541, 792
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 379, 796
SinI GGWCC 2 cut(s) 541, 792
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 3 cut(s) 185, 191, 665
SmoI CTYRAG 3 cut(s) 185, 191, 665
Sse9I AATT 4 cut(s) 228, 509, 819, 949
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 57, 590
SstI GAGCTC 1 cut(s) 279
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 2 cut(s) 739, 810
TaaI ACNGT 5 cut(s) 152, 476, 541, 631, 658
TaqI TCGA 5 cut(s) 297, 387, 633, 804, 894
TasI AATT 4 cut(s) 228, 509, 819, 949
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 39, 713, 735
Tru1I TTAA 4 cut(s) 141, 186, 192, 441
Tru9I TTAA 4 cut(s) 141, 186, 192, 441
TscAI CASTG 2 cut(s) 157, 634
TseFI GTSAC 4 cut(s) 52, 218, 782, 905
TseI GCWGC 4 cut(s) 332, 335, 580, 944
Tsp45I GTSAC 4 cut(s) 52, 218, 782, 905
TspDTI ATGAA 4 cut(s) 195, 699, 882, 945
TspGWI ACGGA 2 cut(s) 332, 893
TspRI CASTG 2 cut(s) 157, 634
Van91I CCANNNNNTGG 1 cut(s) 550
Vha464I CTTAAG 2 cut(s) 185, 191
VpaK11BI GGWCC 2 cut(s) 541, 792
XapI RAATTY 1 cut(s) 509
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XspI CTAG 2 cut(s) 57, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.