Rmu_sc0005371.1_g000004

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005371.1
Physical Location & Seq
Reverse (-)
14425 .. 21793
7369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005371.1_g000004.1.cds

Sequence Viewer

Length: 1014 bp
atgttcacgcacgacactgtccacggtgcatggaagaattgcgatgtgaaacttaagaatgcaaatcacgtttactttggtaacaaggtagtcaccatttttgcaaacagccgagaagacgaaatcccttggtctggccccggagccgaatacatcgtggatgcctctggtactgccaccgaaatcgaatttgctcagggccatttgaagggcggagcaaagaaggttattgtcacttgcccgtgtgacggtgctcctacgtttgttgtgggtgtcaatgagaaggaatacaagccggagcttaatgttgtttccggtgctagttgcaccaccaactgccttgccccccttgcaaaggtaattcatgataaatttggtatcatcgagggtctgatgagtactgttcactcagttactgctagccaaagaggtgttgatggaacatgtcctaatgattggagacctggaaaagctgcaccaactatcaaagattggagaattggaagagctgcttatatcaacatcattcccactactaccggagctgctaaggctgttggtaaagttctacctgacctggatggtaaattgaccggaatgtcattccgtgttcctagtcttgatgtttcggtggtagacctaacagtgagactagaaaagccagctacggaagagtctgagggaaacctgaaaggaatcttgggttacactgaagatgatgtggtctctactgactttgagggtgacaacaggtcaagtatttttgatgcaaaggccggaattgctttgaacgataacttccacaagttggttgcatggtacgacaacgagtggggatacagttatcaagctccgacgttaacaggcgtggctgtccggtcgatacaactggatcgatcacgtacgaaggtggcctggaaacgagtaggacaggtttgggtatcattttcagcaggaaaaagaagaggtctgttagcaagaagaaataggtgtgttcagtgtgcaaacgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

337

Amino Acids

36.56

Weight (kDa)

8.33

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 598
AccB7I CCANNNNNTGG 1 cut(s) 808
AccI GTMKAC 1 cut(s) 636
AciI CCGC 1 cut(s) 213
AclI AACGTT 1 cut(s) 1008
AclWI GGATC 1 cut(s) 900
AcsI RAATTY 2 cut(s) 188, 371
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 4 cut(s) 172, 400, 821, 904
AfiI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 808
AflII CTTAAG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 2 cut(s) 208, 790
AhdI GACNNNNNGTC 1 cut(s) 751
AjnI CCWGG 3 cut(s) 463, 576, 914
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 6 cut(s) 301, 473, 509, 545, 665, 851
AluI AGCT 6 cut(s) 301, 473, 509, 545, 665, 851
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 3 cut(s) 454, 643, 730
AlwI GGATC 1 cut(s) 900
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 4 cut(s) 136, 199, 774, 912
ApeKI GCWGC 3 cut(s) 473, 509, 545
ApoI RAATTY 2 cut(s) 188, 371
AspS9I GGNCC 2 cut(s) 137, 199
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 85, 755
AsuNHI GCTAGC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 460, 496, 532
BccI CCATC 2 cut(s) 431, 575
BciT130I CCWGG 3 cut(s) 465, 578, 916
BciVI GTATCC 1 cut(s) 830
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 3 cut(s) 454, 643, 730
BfaI CTAG 4 cut(s) 321, 420, 615, 653
BfrI CTTAAG 1 cut(s) 53
BfuI GTATCC 1 cut(s) 830
BisI GCNGC 3 cut(s) 474, 510, 546
BlsI GCNGC 3 cut(s) 475, 511, 547
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 4 cut(s) 141, 465, 578, 916
BmeRI GACNNNNNGTC 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 137, 199
BmiI GGNNCC 2 cut(s) 139, 145
BmrFI CCNGG 4 cut(s) 141, 465, 578, 916
BmsI GCATC 2 cut(s) 151, 757
BmtI GCTAGC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 195, 549
BpuMI CCSGG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 895
BsaAI YACGTR 1 cut(s) 902
BsaI GGTCTC 2 cut(s) 454, 730
BsaJI CCNNGG 3 cut(s) 22, 128, 139
BsaWI WCCGGW 4 cut(s) 314, 539, 593, 876
Bsc4I CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 808
Bse1I ACTGG 1 cut(s) 894
BseBI CCWGG 3 cut(s) 465, 578, 916
BseCI ATCGAT 1 cut(s) 895
BseDI CCNNGG 3 cut(s) 22, 128, 139
BseGI GGATG 2 cut(s) 166, 586
BseLI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 808
BseMII CTCAG 3 cut(s) 209, 423, 669
BseNI ACTGG 1 cut(s) 894
BseXI GCAGC 3 cut(s) 460, 496, 532
BsgI GTGCAG 1 cut(s) 459
Bsh1285I CGRYCG 1 cut(s) 881
BshFI GGCC 4 cut(s) 138, 201, 776, 914
BshVI ATCGAT 1 cut(s) 895
BsiEI CGRYCG 1 cut(s) 881
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 7 cut(s) 141, 296, 315, 540, 594, 777, 877
BsiWI CGTACG 1 cut(s) 902
BslI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 808
BsmAI GTCTC 3 cut(s) 454, 643, 730
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 4 cut(s) 138, 201, 776, 914
Bso31I GGTCTC 2 cut(s) 454, 730
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 892, 896
BspACI CCGC 1 cut(s) 213
BspANI GGCC 4 cut(s) 138, 201, 776, 914
BspCNI CTCAG 3 cut(s) 208, 422, 670
BspDI ATCGAT 1 cut(s) 895
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 139, 145
BspOI GCTAGC 1 cut(s) 423
BspPI GGATC 1 cut(s) 900
BspQI GCTCTTC 1 cut(s) 499
BspTI CTTAAG 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 454, 730
BsrI ACTGG 1 cut(s) 894
BssECI CCNNGG 3 cut(s) 22, 128, 139
BssMI GATC 2 cut(s) 892, 896
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 465, 578, 916
Bst4CI ACNGT 6 cut(s) 19, 26, 251, 403, 646, 842
Bst6I CTCTTC 3 cut(s) 499, 666, 958
BstAFI CTTAAG 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 902
BstC8I GCNNGC 2 cut(s) 421, 663
BstDEI CTNAG 4 cut(s) 195, 409, 549, 678
BstDSI CCRYGG 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 166, 586
BstKTI GATC 2 cut(s) 895, 899
BstMAI GTCTC 3 cut(s) 454, 643, 730
BstMBI GATC 2 cut(s) 892, 896
BstMCI CGRYCG 1 cut(s) 881
BstMWI GCNNNNNNNGC 3 cut(s) 350, 551, 782
BstNI CCWGG 3 cut(s) 465, 578, 916
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 4 cut(s) 139, 463, 576, 914
BstV1I GCAGC 3 cut(s) 460, 496, 532
BstV2I GAAGAC 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 895
BsuI GTATCC 1 cut(s) 830
BsuRI GGCC 4 cut(s) 138, 201, 776, 914
BsuTUI ATCGAT 1 cut(s) 895
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 166, 586
BtsIMutI CAGTG 4 cut(s) 15, 651, 708, 1004
Cac8I GCNNGC 2 cut(s) 421, 663
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 137, 199
ClaI ATCGAT 1 cut(s) 895
Csp6I GTAC 4 cut(s) 171, 399, 820, 903
CviAII CATG 4 cut(s) 30, 365, 444, 816
CviQI GTAC 4 cut(s) 171, 399, 820, 903
DdeI CTNAG 4 cut(s) 195, 409, 549, 678
DpnI GATC 2 cut(s) 894, 898
DpnII GATC 2 cut(s) 892, 896
DrdI GACNNNNNNGTC 1 cut(s) 598
DriI GACNNNNNGTC 1 cut(s) 751
DseDI GACNNNNNNGTC 1 cut(s) 598
Eam1104I CTCTTC 3 cut(s) 499, 666, 958
Eam1105I GACNNNNNGTC 1 cut(s) 751
EarI CTCTTC 3 cut(s) 499, 666, 958
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 2 cut(s) 454, 730
Eco57I CTGAAG 1 cut(s) 732
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRII CCWGG 3 cut(s) 463, 576, 914
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 4 cut(s) 33, 368, 447, 819
FaiI YATR 5 cut(s) 31, 366, 445, 516, 817
FalI AAGNNNNNCTT 2 cut(s) 496, 528
FatI CATG 4 cut(s) 29, 364, 443, 815
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 3 cut(s) 474, 510, 546
FokI GGATG 2 cut(s) 173, 593
Fsp4HI GCNGC 3 cut(s) 474, 510, 546
FspBI CTAG 4 cut(s) 321, 420, 615, 653
GluI GCNGC 3 cut(s) 474, 510, 546
HaeIII GGCC 4 cut(s) 138, 201, 776, 914
HapII CCGG 7 cut(s) 141, 296, 315, 540, 594, 777, 877
Hin1II CATG 4 cut(s) 33, 368, 447, 819
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HinfI GANTC 2 cut(s) 674, 696
HpaI GTTAAC 1 cut(s) 861
HpaII CCGG 7 cut(s) 141, 296, 315, 540, 594, 777, 877
HphI GGTGA 2 cut(s) 85, 755
Hpy166II GTNNAC 6 cut(s) 6, 22, 73, 406, 637, 861
Hpy188I TCNGA 3 cut(s) 393, 679, 855
Hpy188III TCNNGA 2 cut(s) 365, 620
Hpy8I GTNNAC 6 cut(s) 6, 22, 73, 406, 637, 861
Hpy99I CGWCG 1 cut(s) 859
HpyAV CCTTC 4 cut(s) 202, 217, 277, 901
HpyCH4III ACNGT 6 cut(s) 19, 26, 251, 403, 646, 842
HpyCH4IV ACGT 5 cut(s) 69, 260, 857, 901, 1008
HpyCH4V TGCA 9 cut(s) 29, 62, 104, 327, 353, 476, 770, 815, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 551, 782
HpyF3I CTNAG 4 cut(s) 195, 409, 549, 678
HpySE526I ACGT 5 cut(s) 69, 260, 857, 901, 1008
Hsp92II CATG 4 cut(s) 33, 368, 447, 819
KspAI GTTAAC 1 cut(s) 861
Kzo9I GATC 2 cut(s) 892, 896
LguI GCTCTTC 1 cut(s) 499
LmnI GCTCC 6 cut(s) 143, 215, 259, 298, 542, 856
Lsp1109I GCAGC 3 cut(s) 460, 496, 532
LweI GCATC 2 cut(s) 151, 757
MaeI CTAG 4 cut(s) 321, 420, 615, 653
MaeII ACGT 5 cut(s) 69, 260, 857, 901, 1008
MaeIII GTNAC 7 cut(s) 80, 91, 232, 245, 412, 704, 743
MalI GATC 2 cut(s) 894, 898
MboI GATC 2 cut(s) 892, 896
MboII GAAGA 7 cut(s) 46, 128, 516, 683, 725, 975, 993
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 7 cut(s) 37, 188, 360, 371, 498, 587, 780
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 1 cut(s) 878
MnlI CCTC 6 cut(s) 175, 379, 422, 673, 733, 959
MseI TTAA 3 cut(s) 54, 303, 860
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 7 cut(s) 141, 296, 315, 540, 594, 777, 877
MspR9I CCNGG 4 cut(s) 141, 465, 578, 916
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 3 cut(s) 465, 578, 916
MwoI GCNNNNNNNGC 3 cut(s) 350, 551, 782
NciI CCSGG 1 cut(s) 141
NdeII GATC 2 cut(s) 892, 896
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 4 cut(s) 33, 368, 447, 819
NlaIV GGNNCC 2 cut(s) 139, 145
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 4 cut(s) 91, 232, 245, 743
NspI RCATGY 1 cut(s) 447
PagI TCATGA 1 cut(s) 364
PciI ACATGT 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 499
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 696
Pfl23II CGTACG 1 cut(s) 902
PflFI GACNNNGTC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 808
PkrI GCNGC 3 cut(s) 475, 511, 547
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
Ppu21I YACGTR 1 cut(s) 902
PscI ACATGT 1 cut(s) 443
Psp1406I AACGTT 1 cut(s) 1008
Psp6I CCWGG 3 cut(s) 463, 576, 914
PspGI CCWGG 3 cut(s) 463, 576, 914
PspLI CGTACG 1 cut(s) 902
PspN4I GGNNCC 2 cut(s) 139, 145
PspPI GGNCC 2 cut(s) 137, 199
PstNI CAGNNNCTG 1 cut(s) 416
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 4 cut(s) 172, 400, 821, 904
RsaNI GTAC 4 cut(s) 171, 399, 820, 903
SapI GCTCTTC 1 cut(s) 499
SaqAI TTAA 3 cut(s) 54, 303, 860
SatI GCNGC 3 cut(s) 474, 510, 546
Sau3AI GATC 2 cut(s) 892, 896
Sau96I GGNCC 2 cut(s) 137, 199
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 4 cut(s) 141, 465, 578, 916
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 2 cut(s) 151, 757
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 7 cut(s) 37, 188, 360, 371, 498, 587, 780
SsiI CCGC 1 cut(s) 213
SspMI CTAG 4 cut(s) 321, 420, 615, 653
StyD4I CCNGG 4 cut(s) 139, 463, 576, 914
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 6 cut(s) 19, 26, 251, 403, 646, 842
TaiI ACGT 5 cut(s) 72, 263, 860, 904, 1011
TaqI TCGA 4 cut(s) 186, 384, 881, 895
TasI AATT 7 cut(s) 37, 188, 360, 371, 498, 587, 780
TatI WGTACW 1 cut(s) 398
TfiI GAWTC 1 cut(s) 696
Tru1I TTAA 3 cut(s) 54, 303, 860
Tru9I TTAA 3 cut(s) 54, 303, 860
TscAI CASTG 4 cut(s) 22, 651, 715, 1004
TseFI GTSAC 4 cut(s) 91, 232, 245, 743
TseI GCWGC 3 cut(s) 473, 509, 545
Tsp45I GTSAC 4 cut(s) 91, 232, 245, 743
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 2 cut(s) 596, 683
TspRI CASTG 4 cut(s) 22, 651, 715, 1004
Tth111I GACNNNGTC 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 808
Vha464I CTTAAG 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 188, 371
XceI RCATGY 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 4 cut(s) 321, 420, 615, 653
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.