Rroxscaffold_2G00078260

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000502
Physical Location & Seq
Reverse (-)
1615303 .. 1617558
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078260.1

Sequence Viewer

Length: 1026 bp
ATGGCCAAGATCAAGATTGGCATCAATGGATTCGGAAGGATTGGCCGGTTGGTGGCCAGAGTTGCTCTGCAGAGAGATGACATCGAACTCGTTGCCATTAACGATCCTTTCTTGACTGCTGATCACATGAGATATATGTTTAAGTACGACAGTGTTCATGGGCGGTGGAAGCATGGCGAGCTTAAGGTTAAGGATGAAAGCACACTTCTCTTTGGTGATAAGCCCGTTAAAGTTTTTGATTCTAGTTCTTTACTTACCTTACCTGATGAAATCCCATGGGGCGATTCTGGTGCTGAATTTGTCGTTGAGTCCTCCGGAGTTTACACAGATCGGGAGAGAGCATCTCACCACCTGAGGACTGGTGCAAAGAAAGTTATCATTTCTGCCCCAAGTGATGATGTTCCCATGTTTGTTGTGGGTGTTAATGAGAAGGACTACACTCCAGATCTTAACGTTGTTTCAAATGCAAGCTGCACTACTAACTGTCTTGCTCCCCTGGCAAAGGTTATCCACGATAAATTTGGTATCATAGAGGGTCTTATGACCACTGTCCATTCTATTACTGCTACTCAAAAGACTGTTGATAGTCCACTAATGAAAGACTGGAGAGGTGGTAGAGCTGCTGGCCATAACATCATTCCCACTAGTACTGGAGCTGCTGAGGGTGTTGGTAAAGTGCTGCCGGCACTAAATGGTAAGTTGACAGGAATGGCCTTCAGGGTTCCCACTGTTGATGTTTCCGTGGTTGACCTCACAGTGAGACTTGAGAAGAAGGCTACTTATGATGAGATTAAAAATGCTATCAAGGAAGAATCTGAGGGTAACCTAAAGGGAATCCTCGGATATATGGACGATGATTTAGTGTCCACTGACTTTGTGGATAACCACAGGTCAAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCGCGTGGTATGACAATGAATGGGGTTACAGCTCACGAGTCATCGACTTGATCTGTCACATGGCCACAGTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

341

Amino Acids

37.37

Weight (kDa)

5.82

Isoelectric Point (pI)

28.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 110 2.1e-30 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 163 - 320 2.1e-69 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 953
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 1 cut(s) 163
AclI AACGTT 1 cut(s) 453
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 5 cut(s) 3, 43, 54, 625, 1011
AcsI RAATTY 2 cut(s) 296, 518
AcuI CTGAAG 1 cut(s) 700
AfaI GTAC 2 cut(s) 146, 649
AfiI CCNNNNNNNGG 2 cut(s) 52, 502
AflII CTTAAG 1 cut(s) 182
AgsI TTSAA 2 cut(s) 462, 928
AhlI ACTAGT 1 cut(s) 644
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 6 cut(s) 181, 471, 620, 656, 946, 981
AluI AGCT 6 cut(s) 181, 471, 620, 656, 946, 981
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 6 cut(s) 3, 43, 54, 625, 711, 1011
ApeKI GCWGC 4 cut(s) 471, 620, 656, 679
ApoI RAATTY 2 cut(s) 296, 518
AsuHPI GGTGA 2 cut(s) 227, 338
AxyI CCTNAGG 1 cut(s) 353
BalI TGGCCA 4 cut(s) 5, 56, 627, 1013
BauI CACGAG 1 cut(s) 984
BbvCI CCTCAGC 1 cut(s) 660
BbvI GCAGC 4 cut(s) 458, 607, 643, 666
BcgI CGANNNNNNTGC 4 cut(s) 74, 108, 272, 306
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 754
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 2 cut(s) 243, 645
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 182
BglII AGATCT 1 cut(s) 445
BisI GCNGC 4 cut(s) 472, 621, 657, 680
BlsI GCNGC 4 cut(s) 473, 622, 658, 681
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 723
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 3 cut(s) 30, 350, 895
BoxI GACNNNNGTC 1 cut(s) 548
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpmI CTGGAG 3 cut(s) 426, 625, 672
Bpu10I CCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 5 cut(s) 275, 495, 741, 838, 909
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 502
Bse118I RCCGGY 2 cut(s) 45, 682
Bse1I ACTGG 3 cut(s) 364, 608, 655
Bse21I CCTNAGG 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 314
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 5 cut(s) 275, 495, 741, 838, 909
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 52, 502
BseMII CTCAG 3 cut(s) 344, 651, 807
BseNI ACTGG 3 cut(s) 364, 608, 655
BseXI GCAGC 4 cut(s) 458, 607, 643, 666
BsgI GTGCAG 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 953
BshFI GGCC 6 cut(s) 5, 45, 56, 627, 713, 1013
BsiSI CCGG 3 cut(s) 46, 315, 683
BslI CCNNNNNNNGG 2 cut(s) 52, 502
BsmAI GTCTC 1 cut(s) 754
BsnI GGCC 6 cut(s) 5, 45, 56, 627, 713, 1013
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 6 cut(s) 9, 103, 121, 328, 445, 999
Bsp19I CCATGG 1 cut(s) 275
BspACI CCGC 1 cut(s) 163
BspANI GGCC 6 cut(s) 5, 45, 56, 627, 713, 1013
BspCNI CTCAG 3 cut(s) 345, 652, 808
BspEI TCCGGA 1 cut(s) 314
BspFNI CGCG 1 cut(s) 953
BspLI GGNNCC 1 cut(s) 723
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 45, 682
BsrI ACTGG 3 cut(s) 364, 608, 655
BssAI RCCGGY 2 cut(s) 45, 682
BssECI CCNNGG 5 cut(s) 275, 495, 741, 838, 909
BssMI GATC 6 cut(s) 9, 103, 121, 328, 445, 999
BssSI CACGAG 1 cut(s) 984
BssT1I CCWWGG 2 cut(s) 275, 909
Bst2BI CACGAG 1 cut(s) 984
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 7 cut(s) 152, 485, 550, 580, 730, 757, 1018
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 4 cut(s) 179, 469, 625, 684
BstDEI CTNAG 3 cut(s) 353, 660, 816
BstDSI CCRYGG 2 cut(s) 275, 741
BstEII GGTNACC 1 cut(s) 821
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 953
BstKTI GATC 6 cut(s) 12, 106, 124, 331, 448, 1002
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 6 cut(s) 9, 103, 121, 328, 445, 999
BstMWI GCNNNNNNNGC 5 cut(s) 62, 169, 178, 497, 920
BstNI CCWGG 1 cut(s) 497
BstPAI GACNNNNGTC 1 cut(s) 548
BstPI GGTNACC 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 495
BstSFI CTRYAG 1 cut(s) 68
BstUI CGCG 1 cut(s) 953
BstV1I GCAGC 4 cut(s) 458, 607, 643, 666
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 6 cut(s) 5, 45, 56, 627, 713, 1013
BtgI CCRYGG 2 cut(s) 275, 741
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 5 cut(s) 157, 546, 726, 762, 867
Cac8I GCNNGC 4 cut(s) 179, 469, 625, 684
Cfr10I RCCGGY 2 cut(s) 45, 682
Csp6I GTAC 2 cut(s) 145, 648
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 7 cut(s) 127, 158, 173, 276, 406, 1009, 1023
CviQI GTAC 2 cut(s) 145, 648
DdeI CTNAG 3 cut(s) 353, 660, 816
DpnI GATC 6 cut(s) 11, 105, 123, 330, 447, 1001
DpnII GATC 6 cut(s) 9, 103, 121, 328, 445, 999
EaeI YGGCCR 5 cut(s) 3, 43, 54, 625, 1011
Eco130I CCWWGG 2 cut(s) 275, 909
Eco57I CTGAAG 1 cut(s) 700
Eco81I CCTNAGG 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 821
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoO65I GGTNACC 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 2 cut(s) 275, 909
ErhI CCWWGG 2 cut(s) 275, 909
FaeI CATG 7 cut(s) 130, 161, 176, 279, 409, 1012, 1026
FatI CATG 7 cut(s) 126, 157, 172, 275, 405, 1008, 1022
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 472, 621, 657, 680
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 472, 621, 657, 680
FspBI CTAG 2 cut(s) 243, 645
GluI GCNGC 4 cut(s) 472, 621, 657, 680
GsuI CTGGAG 3 cut(s) 426, 625, 672
HaeIII GGCC 6 cut(s) 5, 45, 56, 627, 713, 1013
HapII CCGG 3 cut(s) 46, 315, 683
Hin1II CATG 7 cut(s) 130, 161, 176, 279, 409, 1012, 1026
HincII GTYRAC 2 cut(s) 702, 748
HindII GTYRAC 2 cut(s) 702, 748
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 7 cut(s) 30, 239, 284, 308, 812, 834, 987
HpaII CCGG 3 cut(s) 46, 315, 683
HphI GGTGA 2 cut(s) 227, 338
Hpy166II GTNNAC 5 cut(s) 322, 590, 702, 748, 867
Hpy188I TCNGA 3 cut(s) 35, 817, 842
Hpy188III TCNNGA 6 cut(s) 13, 112, 315, 332, 443, 984
Hpy8I GTNNAC 5 cut(s) 322, 590, 702, 748, 867
HpyAV CCTTC 4 cut(s) 30, 424, 724, 766
HpyCH4III ACNGT 7 cut(s) 152, 485, 550, 580, 730, 757, 1018
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 4 cut(s) 70, 365, 467, 474
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 169, 178, 497, 920
HpyF3I CTNAG 3 cut(s) 353, 660, 816
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 7 cut(s) 130, 161, 176, 279, 409, 1012, 1026
Kpn2I TCCGGA 1 cut(s) 314
KroI GCCGGC 1 cut(s) 682
KroNI GCCGGC 1 cut(s) 684
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 6 cut(s) 9, 103, 121, 328, 445, 999
LmnI GCTCC 2 cut(s) 496, 653
Lsp1109I GCAGC 4 cut(s) 458, 607, 643, 666
LweI GCATC 3 cut(s) 30, 350, 895
MaeI CTAG 2 cut(s) 243, 645
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 4 cut(s) 821, 974, 1004, 1018
MalI GATC 6 cut(s) 11, 105, 123, 330, 447, 1001
MboI GATC 6 cut(s) 9, 103, 121, 328, 445, 999
MboII GAAGA 2 cut(s) 781, 821
MflI RGATCY 1 cut(s) 445
MlsI TGGCCA 4 cut(s) 5, 56, 627, 1013
MluCI AATT 3 cut(s) 296, 518, 918
MluNI TGGCCA 4 cut(s) 5, 56, 627, 1013
MlyI GAGTC 2 cut(s) 317, 996
MnlI CCTC 8 cut(s) 322, 348, 526, 602, 655, 761, 811, 848
Mox20I TGGCCA 4 cut(s) 5, 56, 627, 1013
MroI TCCGGA 1 cut(s) 314
MroNI GCCGGC 1 cut(s) 682
MscI TGGCCA 4 cut(s) 5, 56, 627, 1013
MseI TTAA 8 cut(s) 99, 141, 183, 189, 228, 423, 450, 792
Msp20I TGGCCA 4 cut(s) 5, 56, 627, 1013
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 3 cut(s) 46, 315, 683
MspR9I CCNGG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 1 cut(s) 953
MwoI GCNNNNNNNGC 5 cut(s) 62, 169, 178, 497, 920
NaeI GCCGGC 1 cut(s) 684
NcoI CCATGG 1 cut(s) 275
NdeII GATC 6 cut(s) 9, 103, 121, 328, 445, 999
NgoMIV GCCGGC 1 cut(s) 682
NlaIII CATG 7 cut(s) 130, 161, 176, 279, 409, 1012, 1026
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 1 cut(s) 1004
PdiI GCCGGC 1 cut(s) 684
PfeI GAWTC 5 cut(s) 30, 239, 284, 812, 834
PkrI GCNGC 4 cut(s) 473, 622, 658, 681
PleI GAGTC 2 cut(s) 316, 995
PpsI GAGTC 2 cut(s) 316, 995
PshAI GACNNNNGTC 1 cut(s) 548
Psp1406I AACGTT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 495
PspEI GGTNACC 1 cut(s) 821
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 723
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 2 cut(s) 146, 649
RsaNI GTAC 2 cut(s) 145, 648
SaqAI TTAA 8 cut(s) 99, 141, 183, 189, 228, 423, 450, 792
SatI GCNGC 4 cut(s) 472, 621, 657, 680
Sau3AI GATC 6 cut(s) 9, 103, 121, 328, 445, 999
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 2 cut(s) 317, 996
ScrFI CCNGG 1 cut(s) 497
SfaNI GCATC 3 cut(s) 30, 350, 895
SfcI CTRYAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 182, 764
SmoI CTYRAG 2 cut(s) 182, 764
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 3 cut(s) 296, 518, 918
SsiI CCGC 1 cut(s) 163
SspMI CTAG 2 cut(s) 243, 645
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 2 cut(s) 275, 909
TaaI ACNGT 7 cut(s) 152, 485, 550, 580, 730, 757, 1018
TaiI ACGT 1 cut(s) 456
TaqI TCGA 3 cut(s) 84, 903, 993
TasI AATT 3 cut(s) 296, 518, 918
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 5 cut(s) 30, 239, 284, 812, 834
Tru1I TTAA 8 cut(s) 99, 141, 183, 189, 228, 423, 450, 792
Tru9I TTAA 8 cut(s) 99, 141, 183, 189, 228, 423, 450, 792
TscAI CASTG 5 cut(s) 157, 553, 733, 762, 874
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 4 cut(s) 471, 620, 656, 679
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 5 cut(s) 146, 210, 282, 611, 981
TspGWI ACGGA 1 cut(s) 730
TspRI CASTG 5 cut(s) 157, 553, 733, 762, 874
Vha464I CTTAAG 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 500
XapI RAATTY 2 cut(s) 296, 518
XcmI CCANNNNNNNNNTGG 4 cut(s) 356, 412, 518, 874
XspI CTAG 2 cut(s) 243, 645
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.