RchiOBHm_Chr2g0174371

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000502
Physical Location & Seq
Forward (+)
86969550 .. 86969895
346 bp
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UTR
Exon/CDS
Intron
PRQ54152

Sequence Viewer

Length: 183 bp
ATGGCGAAGATCAAGATTGGCATAAATGGATTCAGAAGGATTGGCCGGTTGGTGGCCAGAGTTGCTCTGCAGAGAGATGACATCGAACTCGTTGCCATTAACGATCCTTTCTTGACTACTGATCACATGGTATGTGTATGTAGAACCAGTTTCATACACGATTCTAGTGTCCCGTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

60

Amino Acids

6.74

Weight (kDa)

8.88

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 53 7.9e-12 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 43, 54
AfiI CCNNNNNNNGG 1 cut(s) 52
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 43, 54
BalI TGGCCA 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BclI TGATCA 1 cut(s) 121
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 147
BshFI GGCC 2 cut(s) 45, 56
BsiSI CCGG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 45, 56
Bsp143I GATC 3 cut(s) 9, 103, 121
BspANI GGCC 2 cut(s) 45, 56
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 45
BssMI GATC 3 cut(s) 9, 103, 121
BstKTI GATC 3 cut(s) 12, 106, 124
BstMBI GATC 3 cut(s) 9, 103, 121
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 45, 56
Cfr10I RCCGGY 1 cut(s) 45
CviAII CATG 1 cut(s) 127
CviJI RGCY 2 cut(s) 45, 56
CviKI_1 RGCY 2 cut(s) 45, 56
DpnI GATC 3 cut(s) 11, 105, 123
DpnII GATC 3 cut(s) 9, 103, 121
EaeI YGGCCR 2 cut(s) 43, 54
FaeI CATG 1 cut(s) 130
FaiI YATR 5 cut(s) 23, 128, 133, 139, 155
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 126
FbaI TGATCA 1 cut(s) 121
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 45, 56
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 130
HinfI GANTC 2 cut(s) 30, 161
HpaII CCGG 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 13, 112
HpyAV CCTTC 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 9, 103, 121
LpnPI CCDG 3 cut(s) 59, 70, 160
MaeI CTAG 1 cut(s) 165
MalI GATC 3 cut(s) 11, 105, 123
MboI GATC 3 cut(s) 9, 103, 121
MboII GAAGA 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 56
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 9, 103, 121
NlaIII CATG 1 cut(s) 130
PfeI GAWTC 2 cut(s) 30, 161
PstI CTGCAG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 3 cut(s) 9, 103, 121
SfcI CTRYAG 1 cut(s) 68
SgeI CNNG 9 cut(s) 25, 58, 69, 101, 124, 139, 159, 170, 177
SspMI CTAG 1 cut(s) 165
TaqI TCGA 1 cut(s) 84
TfiI GAWTC 2 cut(s) 30, 161
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 142
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.