Prupe.3G300600_v2.0.a1

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000502
Physical Location & Seq
Forward (+)
26549832 .. 26552356
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G300600.1

Sequence Viewer

Length: 1014 bp
ATGGCCAAGATCAAGATTGGCATCAATGGATTCGGAAGGATTGGCCGCTTGGTTGCCAGAGTTGCTCTGCAGAGAGACGACGTTGAACTTGTCGCTGTGAACGACCCTTTCATCAACATTGAATACATCAGCTACATGTTCAAGTATGATAGTGTTCACGGGCAATGGAAGCACCACGAGCTTAACGCAAAGGATGATAAGACCCTTCTCTTTGGTGACAAGCCTGTCAAAGTTTTTGCTTCTAGGGAGCCCGAAGGGATCCCGTGGGGCAAGGCTGGTGCTGAATTTGTGGTTGAGTCCACCGGAGTGTTCACTGATAAGGAGAAAGCTTCTCTCCACTTAAAGGGTGGTGCAAAGAAGGTTGTGATTTCTGCCCCCAGTAAGGATGCTCCCATGTTTGTTGTGGGTGTCAATGAGAAGGACTACACCCCAGATCTTAACATTGTTTCCAATGCCAGCTGCACCACCAACTGTCTTGCTCCATTGGCAAAGGTTGTTCATGACAAATTTGGTATTGTGGAGGGTCTTATGACTACCGTCCATTCTATTACTGCCACTCAAAAGACTGTTGATGGACCATCAATGAAAGACTGGAGAGGTGGTAGAGCTGCAGCCACCAACATCATTCCCAGCAGTACTGGAGCTGCCAAGGCTGTTGGTAAAGTGCTGCCTGCACTGAATGGGAAGTTGACAGGAATGGCTTTCCGTGTTCCCACTGTTGATGTTTCGGTGGTTGATCTCACTGTGAGACTTGAGAAGAAGGCCACTTATGATGAGATTAAAGATGCCATCAAGAAAGAATCTGAGGGCAGCATGAAAGGAATCCTTGGATACACCGACGAGGATGTTGTGTCGACTGACTTCGTGGGTGACAACAGGTCGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTGTCTTGGTATGACAACGAATGGGGTTACAGCTCACGAGTTATTGACTTGATCTGTCACATTGCCTCTGTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

338

Amino Acids

36.57

Weight (kDa)

7.68

Isoelectric Point (pI)

23.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 854
AciI CCGC 1 cut(s) 46
AclWI GGATC 2 cut(s) 253, 266
AcoI YGGCCR 2 cut(s) 3, 43
AcsI RAATTY 2 cut(s) 284, 506
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 2 cut(s) 343, 382
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 4 cut(s) 86, 122, 142, 916
AhdI GACNNNNNGTC 1 cut(s) 877
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 8 cut(s) 132, 181, 329, 459, 608, 644, 934, 969
AluI AGCT 8 cut(s) 132, 181, 329, 459, 608, 644, 934, 969
Alw26I GTCTC 2 cut(s) 69, 742
AlwI GGATC 2 cut(s) 253, 266
AoxI GGCC 3 cut(s) 3, 43, 762
ApeKI GCWGC 6 cut(s) 459, 608, 611, 644, 667, 810
ApoI RAATTY 2 cut(s) 284, 506
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 227, 881
AvaII GGWCC 1 cut(s) 575
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 252
BauI CACGAG 2 cut(s) 176, 972
BbvI GCAGC 6 cut(s) 446, 595, 623, 631, 654, 822
BccI CCATC 3 cut(s) 566, 586, 797
BciVI GTATCC 1 cut(s) 824
BcoDI GTCTC 2 cut(s) 69, 742
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 2 cut(s) 68, 609
BfuI GTATCC 1 cut(s) 824
BglII AGATCT 1 cut(s) 433
BisI GCNGC 7 cut(s) 46, 460, 609, 612, 645, 668, 811
BlsI GCNGC 7 cut(s) 47, 461, 610, 613, 646, 669, 812
BmcAI AGTACT 1 cut(s) 637
Bme18I GGWCC 1 cut(s) 575
BmeRI GACNNNNNGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 249, 260
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 4 cut(s) 30, 376, 775, 883
BmuI ACTGGG 1 cut(s) 372
BoxI GACNNNNGTC 1 cut(s) 536
BpmI CTGGAG 2 cut(s) 613, 660
BpuEI CTTGAG 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 4 cut(s) 263, 648, 826, 897
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 382
Bse1I ACTGG 3 cut(s) 378, 596, 643
Bse3DI GCAATG 2 cut(s) 170, 996
Bse8I GATNNNNATC 1 cut(s) 20
BseDI CCNNGG 4 cut(s) 263, 648, 826, 897
BseGI GGATG 3 cut(s) 199, 391, 850
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 343, 382
BseMI GCAATG 2 cut(s) 170, 996
BseMII CTCAG 1 cut(s) 795
BseNI ACTGG 3 cut(s) 378, 596, 643
BseXI GCAGC 6 cut(s) 446, 595, 623, 631, 654, 822
BseYI CCCAGC 1 cut(s) 629
BsgI GTGCAG 2 cut(s) 445, 657
BshFI GGCC 3 cut(s) 5, 45, 764
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 343, 382
BsmAI GTCTC 2 cut(s) 69, 742
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 3 cut(s) 5, 45, 764
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 5 cut(s) 9, 258, 433, 736, 987
BspACI CCGC 1 cut(s) 46
BspANI GGCC 3 cut(s) 5, 45, 764
BspCNI CTCAG 1 cut(s) 796
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 249, 260
BspMAI CTGCAG 2 cut(s) 72, 613
BspPI GGATC 2 cut(s) 253, 266
BsrDI GCAATG 2 cut(s) 170, 996
BsrI ACTGG 3 cut(s) 378, 596, 643
BssECI CCNNGG 4 cut(s) 263, 648, 826, 897
BssMI GATC 5 cut(s) 9, 258, 433, 736, 987
BssSI CACGAG 2 cut(s) 176, 972
BssT1I CCWWGG 3 cut(s) 648, 826, 897
Bst2BI CACGAG 2 cut(s) 176, 972
Bst4CI ACNGT 5 cut(s) 473, 538, 568, 718, 745
BstC8I GCNNGC 2 cut(s) 457, 672
BstDEI CTNAG 1 cut(s) 804
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 3 cut(s) 199, 391, 850
BstKTI GATC 5 cut(s) 12, 261, 436, 739, 990
BstMAI GTCTC 2 cut(s) 69, 742
BstMBI GATC 5 cut(s) 9, 258, 433, 736, 987
BstMWI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 485, 650, 908
BstNSI RCATGY 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 536
BstSFI CTRYAG 2 cut(s) 68, 609
BstV1I GCAGC 6 cut(s) 446, 595, 623, 631, 654, 822
BstX2I RGATCY 2 cut(s) 258, 433
BstYI RGATCY 2 cut(s) 258, 433
BsuI GTATCC 1 cut(s) 824
BsuRI GGCC 3 cut(s) 5, 45, 764
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 3 cut(s) 199, 391, 850
BtsIMutI CAGTG 4 cut(s) 312, 674, 714, 741
Cac8I GCNNGC 2 cut(s) 457, 672
CciI TCATGA 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 636
CviAII CATG 4 cut(s) 136, 394, 500, 814
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 1 cut(s) 804
DpnI GATC 5 cut(s) 11, 260, 435, 738, 989
DpnII GATC 5 cut(s) 9, 258, 433, 736, 987
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 1 cut(s) 877
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 2 cut(s) 3, 43
Eam1105I GACNNNNNGTC 1 cut(s) 877
Eco130I CCWWGG 3 cut(s) 648, 826, 897
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 575
EcoT14I CCWWGG 3 cut(s) 648, 826, 897
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 3 cut(s) 648, 826, 897
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 139, 397, 503, 817
FaiI YATR 8 cut(s) 137, 147, 395, 501, 530, 771, 815, 948
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FatI CATG 4 cut(s) 135, 393, 499, 813
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 7 cut(s) 46, 460, 609, 612, 645, 668, 811
FokI GGATG 3 cut(s) 206, 398, 857
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 7 cut(s) 46, 460, 609, 612, 645, 668, 811
FspBI CTAG 1 cut(s) 243
GluI GCNGC 7 cut(s) 46, 460, 609, 612, 645, 668, 811
GsaI CCCAGC 1 cut(s) 633
GsuI CTGGAG 2 cut(s) 613, 660
HaeIII GGCC 3 cut(s) 5, 45, 764
HapII CCGG 1 cut(s) 303
Hin1II CATG 4 cut(s) 139, 397, 503, 817
HincII GTYRAC 2 cut(s) 690, 855
HindII GTYRAC 2 cut(s) 690, 855
HindIII AAGCTT 2 cut(s) 327, 932
HinfI GANTC 4 cut(s) 30, 296, 800, 822
HpaII CCGG 1 cut(s) 303
HphI GGTGA 2 cut(s) 227, 881
Hpy166II GTNNAC 6 cut(s) 100, 157, 300, 312, 690, 855
Hpy188I TCNGA 2 cut(s) 35, 805
Hpy188III TCNNGA 4 cut(s) 13, 500, 793, 972
Hpy8I GTNNAC 6 cut(s) 100, 157, 300, 312, 690, 855
Hpy99I CGWCG 2 cut(s) 83, 842
HpyAV CCTTC 6 cut(s) 30, 215, 248, 352, 412, 754
HpyCH4III ACNGT 5 cut(s) 473, 538, 568, 718, 745
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 5 cut(s) 70, 353, 462, 611, 674
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 485, 650, 908
HpyF3I CTNAG 1 cut(s) 804
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 4 cut(s) 139, 397, 503, 817
Kzo9I GATC 5 cut(s) 9, 258, 433, 736, 987
LmnI GCTCC 4 cut(s) 247, 394, 484, 641
Lsp1109I GCAGC 6 cut(s) 446, 595, 623, 631, 654, 822
LweI GCATC 4 cut(s) 30, 376, 775, 883
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 4 cut(s) 215, 869, 962, 992
MalI GATC 5 cut(s) 11, 260, 435, 738, 989
MboI GATC 5 cut(s) 9, 258, 433, 736, 987
MboII GAAGA 1 cut(s) 769
MflI RGATCY 2 cut(s) 258, 433
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 284, 506, 906
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 5 cut(s) 514, 590, 799, 835, 1012
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 183, 341, 438, 780, 1008
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 1 cut(s) 303
MwoI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 485, 650, 908
NdeII GATC 5 cut(s) 9, 258, 433, 736, 987
NlaIII CATG 4 cut(s) 139, 397, 503, 817
NlaIV GGNNCC 2 cut(s) 249, 260
NmuCI GTSAC 3 cut(s) 215, 869, 992
NspI RCATGY 1 cut(s) 139
OliI CACNNNNGTG 1 cut(s) 305
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 3 cut(s) 30, 800, 822
PkrI GCNGC 7 cut(s) 47, 461, 610, 613, 646, 669, 812
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PscI ACATGT 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 536
PspFI CCCAGC 1 cut(s) 629
PspN4I GGNNCC 2 cut(s) 249, 260
PspPI GGNCC 1 cut(s) 575
PstI CTGCAG 2 cut(s) 72, 613
PsuI RGATCY 2 cut(s) 258, 433
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
RseI CAYNNNNRTG 1 cut(s) 305
SalI GTCGAC 1 cut(s) 853
SaqAI TTAA 5 cut(s) 183, 341, 438, 780, 1008
SatI GCNGC 7 cut(s) 46, 460, 609, 612, 645, 668, 811
Sau3AI GATC 5 cut(s) 9, 258, 433, 736, 987
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 1 cut(s) 305
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 4 cut(s) 30, 376, 775, 883
SfcI CTRYAG 2 cut(s) 68, 609
SinI GGWCC 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 3 cut(s) 284, 506, 906
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 243
StyI CCWWGG 3 cut(s) 648, 826, 897
TaaI ACNGT 5 cut(s) 473, 538, 568, 718, 745
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 854, 881, 891
TasI AATT 3 cut(s) 284, 506, 906
TatI WGTACW 1 cut(s) 635
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 30, 800, 822
Tru1I TTAA 5 cut(s) 183, 341, 438, 780, 1008
Tru9I TTAA 5 cut(s) 183, 341, 438, 780, 1008
TscAI CASTG 4 cut(s) 319, 681, 721, 748
TseFI GTSAC 3 cut(s) 215, 869, 992
TseI GCWGC 6 cut(s) 459, 608, 611, 644, 667, 810
Tsp45I GTSAC 3 cut(s) 215, 869, 992
TspDTI ATGAA 4 cut(s) 100, 488, 599, 830
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 4 cut(s) 319, 681, 721, 748
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 2 cut(s) 284, 506
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 2 cut(s) 344, 400
XmiI GTMKAC 1 cut(s) 854
XspI CTAG 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.