Rh7AG114100

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000502
Physical Location & Seq
Reverse (-)
8910929 .. 8914595
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG114100.1

Sequence Viewer

Length: 921 bp
ATGTTCAAGCACGACACTGTTCACGGTGCATGGAAGAATTGCGATGTGAAACTTAAGAATGCAAACCACGTTTACTTTGGTAACAAGGAAGTCACCATTTTTGCAATCAGCCGAGAAGACGAAATCCCTTGGTCCGGCCCCGGAGCCGAATATATCGTGGATGCCTCTGGTACTGCCACCGAAATCGAATTTGCTCAGGGCCATTTGAAGGGCGGAGCAAAGAAGGTTATTGTCACTTGCCCGTGTGATGGTGCTCCTGCGTTTGTTGTGGGTGTCAATGAGAAGGAATACAAGCCGGAGCTTAATGTTATTTCCGGTGCTAGTTGCACCACCAACTGCCTTGCCCCCCTTGCAAAGGTCATTCATGATAAATTTGGTATCATCGAGGGTCTGATGAGCACTGTTCACTCAGTTACTGCTAGCCAAAGAGGTGTTGATGGAACATGTCCTAATGATTGGAGACCCGGAAAAGCTGCACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCCACTACTACCGGAGCTGCTAAGGCTGTTGGTAAAGTTCTACCTGACCTGGATGGTAAATTGACCGGAATGTCATTCCGTGTTCCTAGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGGCTAGAAAAGCCGGCTACGTATGAGGAAATAAAAGCTGCCATCAAGGAAGAGTCTGAGGGAAACCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTGGTCTCTACCGACTTTGAGCATGACAGCAGGTCAAGTATTTTTGATGCAAAGGCCGGAATTGCTTTGAACGATAACTTCCACAAGTTGGTCGCATGGTACGACAACGAGTGGGGATACAGCACTCGCATCGTTGACTTGATGACCTACATTGCGTCATTTGATTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

306

Amino Acids

33.19

Weight (kDa)

5.42

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 1 - 60 3.6e-07 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 114 - 159 8.5e-13 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 161 - 283 1.4e-49 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 598
Acc36I ACCTGC 1 cut(s) 768
AccB7I CCANNNNNTGG 1 cut(s) 835
AccI GTMKAC 1 cut(s) 636
AciI CCGC 1 cut(s) 213
AcsI RAATTY 2 cut(s) 188, 371
AcuI CTGAAG 2 cut(s) 737, 759
AfaI GTAC 2 cut(s) 172, 848
AfiI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 835
AflII CTTAAG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 3 cut(s) 7, 208, 817
AhdI GACNNNNNGTC 1 cut(s) 778
AjnI CCWGG 1 cut(s) 576
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AluBI AGCT 5 cut(s) 301, 473, 509, 545, 686
AluI AGCT 5 cut(s) 301, 473, 509, 545, 686
Alw21I GWGCWC 2 cut(s) 256, 401
Alw26I GTCTC 2 cut(s) 454, 757
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 3 cut(s) 136, 199, 801
ApeKI GCWGC 4 cut(s) 473, 509, 545, 686
ApoI RAATTY 2 cut(s) 188, 371
AspS9I GGNCC 3 cut(s) 132, 137, 199
AsuC2I CCSGG 2 cut(s) 141, 465
AsuHPI GGTGA 1 cut(s) 85
AsuNHI GCTAGC 1 cut(s) 419
AvaII GGWCC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 256, 401
BbvI GCAGC 4 cut(s) 460, 496, 532, 673
BccI CCATC 4 cut(s) 242, 431, 575, 698
BcgI CGANNNNNNTGC 2 cut(s) 859, 893
BciT130I CCWGG 1 cut(s) 578
BciVI GTATCC 1 cut(s) 857
BcnI CCSGG 2 cut(s) 141, 465
BcoDI GTCTC 2 cut(s) 454, 757
BfaI CTAG 4 cut(s) 321, 420, 615, 653
BfrI CTTAAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 768
BfuI GTATCC 1 cut(s) 857
BisI GCNGC 4 cut(s) 474, 510, 546, 687
BlsI GCNGC 4 cut(s) 475, 511, 547, 688
Bme1390I CCNGG 3 cut(s) 141, 465, 578
Bme18I GGWCC 1 cut(s) 132
BmeRI GACNNNNNGTC 1 cut(s) 778
BmgT120I GGNCC 3 cut(s) 132, 137, 199
BmiI GGNNCC 2 cut(s) 139, 145
BmrFI CCNGG 3 cut(s) 141, 465, 578
BmsI GCATC 3 cut(s) 151, 784, 885
BmtI GCTAGC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 195, 549
BpuMI CCSGG 2 cut(s) 141, 465
BsaAI YACGTR 1 cut(s) 669
BsaI GGTCTC 2 cut(s) 454, 757
BsaJI CCNNGG 2 cut(s) 128, 139
BsaWI WCCGGW 3 cut(s) 314, 539, 593
Bsc4I CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 835
Bse118I RCCGGY 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 897
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 2 cut(s) 128, 139
BseGI GGATG 2 cut(s) 166, 586
BseLI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 835
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 3 cut(s) 209, 423, 696
BseXI GCAGC 4 cut(s) 460, 496, 532, 673
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 3 cut(s) 138, 201, 803
BsiHKAI GWGCWC 2 cut(s) 256, 401
BsiSI CCGG 9 cut(s) 135, 141, 296, 315, 465, 540, 594, 662, 804
BslI CCNNNNNNNGG 5 cut(s) 134, 208, 248, 355, 835
BsmAI GTCTC 2 cut(s) 454, 757
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 3 cut(s) 138, 201, 803
Bso31I GGTCTC 2 cut(s) 454, 757
Bsp1286I GDGCHC 2 cut(s) 256, 401
BspACI CCGC 1 cut(s) 213
BspANI GGCC 3 cut(s) 138, 201, 803
BspCNI CTCAG 3 cut(s) 208, 422, 697
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 139, 145
BspMI ACCTGC 1 cut(s) 768
BspOI GCTAGC 1 cut(s) 423
BspQI GCTCTTC 1 cut(s) 499
BspTI CTTAAG 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 454, 757
BsrDI GCAATG 1 cut(s) 897
BsrFI RCCGGY 1 cut(s) 661
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 2 cut(s) 128, 139
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 4 cut(s) 19, 26, 403, 646
Bst6I CTCTTC 2 cut(s) 499, 693
BstAFI CTTAAG 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 669
BstC8I GCNNGC 2 cut(s) 421, 663
BstDEI CTNAG 4 cut(s) 195, 409, 549, 705
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 166, 586
BstMAI GTCTC 2 cut(s) 454, 757
BstMWI GCNNNNNNNGC 4 cut(s) 350, 551, 658, 809
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 3 cut(s) 139, 463, 576
BstSNI TACGTA 1 cut(s) 669
BstV1I GCAGC 4 cut(s) 460, 496, 532, 673
BstV2I GAAGAC 1 cut(s) 123
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 3 cut(s) 138, 201, 803
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 166, 586
BtsIMutI CAGTG 4 cut(s) 15, 399, 651, 735
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 2 cut(s) 421, 663
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 3 cut(s) 132, 137, 199
CseI GACGC 1 cut(s) 891
Csp6I GTAC 2 cut(s) 171, 847
CviAII CATG 5 cut(s) 30, 365, 444, 770, 843
CviQI GTAC 2 cut(s) 171, 847
DdeI CTNAG 4 cut(s) 195, 409, 549, 705
DrdI GACNNNNNNGTC 1 cut(s) 598
DriI GACNNNNNGTC 1 cut(s) 778
DseDI GACNNNNNNGTC 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 499, 693
Eam1105I GACNNNNNGTC 1 cut(s) 778
EarI CTCTTC 2 cut(s) 499, 693
EciI GGCGGA 1 cut(s) 228
Eco105I TACGTA 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 2 cut(s) 454, 757
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 737, 759
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 5 cut(s) 33, 368, 447, 773, 846
FaiI YATR 9 cut(s) 31, 153, 366, 445, 516, 672, 771, 844, 919
FalI AAGNNNNNCTT 4 cut(s) 496, 528, 710, 742
FatI CATG 5 cut(s) 29, 364, 443, 769, 842
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 4 cut(s) 474, 510, 546, 687
FokI GGATG 2 cut(s) 173, 593
Fsp4HI GCNGC 4 cut(s) 474, 510, 546, 687
FspBI CTAG 4 cut(s) 321, 420, 615, 653
GluI GCNGC 4 cut(s) 474, 510, 546, 687
HaeIII GGCC 3 cut(s) 138, 201, 803
HapII CCGG 9 cut(s) 135, 141, 296, 315, 465, 540, 594, 662, 804
HgaI GACGC 1 cut(s) 891
Hin1II CATG 5 cut(s) 33, 368, 447, 773, 846
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 3 cut(s) 701, 723, 911
HpaII CCGG 9 cut(s) 135, 141, 296, 315, 465, 540, 594, 662, 804
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 5 cut(s) 22, 73, 406, 637, 883
Hpy188I TCNGA 2 cut(s) 393, 706
Hpy188III TCNNGA 2 cut(s) 365, 620
Hpy8I GTNNAC 5 cut(s) 22, 73, 406, 637, 883
HpyAV CCTTC 4 cut(s) 202, 217, 277, 712
HpyCH4III ACNGT 4 cut(s) 19, 26, 403, 646
HpyCH4IV ACGT 2 cut(s) 69, 668
HpyCH4V TGCA 7 cut(s) 29, 62, 104, 327, 353, 476, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 551, 658, 809
HpyF3I CTNAG 4 cut(s) 195, 409, 549, 705
HpySE526I ACGT 2 cut(s) 69, 668
Hsp92II CATG 5 cut(s) 33, 368, 447, 773, 846
KroI GCCGGC 1 cut(s) 661
KroNI GCCGGC 1 cut(s) 663
LguI GCTCTTC 1 cut(s) 499
LmnI GCTCC 5 cut(s) 143, 215, 259, 298, 542
Lsp1109I GCAGC 4 cut(s) 460, 496, 532, 673
LweI GCATC 3 cut(s) 151, 784, 885
MaeI CTAG 4 cut(s) 321, 420, 615, 653
MaeII ACGT 2 cut(s) 69, 668
MaeIII GTNAC 5 cut(s) 80, 91, 232, 412, 731
MboII GAAGA 5 cut(s) 46, 128, 516, 710, 752
MhlI GDGCHC 2 cut(s) 256, 401
MluCI AATT 6 cut(s) 37, 188, 371, 498, 587, 807
MlyI GAGTC 1 cut(s) 710
MnlI CCTC 6 cut(s) 175, 379, 422, 642, 667, 700
MroNI GCCGGC 1 cut(s) 661
MseI TTAA 2 cut(s) 54, 303
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 9 cut(s) 135, 141, 296, 315, 465, 540, 594, 662, 804
MspR9I CCNGG 3 cut(s) 141, 465, 578
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 4 cut(s) 350, 551, 658, 809
NaeI GCCGGC 1 cut(s) 663
NciI CCSGG 2 cut(s) 141, 465
NgoMIV GCCGGC 1 cut(s) 661
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 5 cut(s) 33, 368, 447, 773, 846
NlaIV GGNNCC 2 cut(s) 139, 145
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 2 cut(s) 91, 232
NspI RCATGY 1 cut(s) 447
PagI TCATGA 1 cut(s) 364
PciI ACATGT 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 846
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 663
PfeI GAWTC 2 cut(s) 723, 911
PflMI CCANNNNNTGG 1 cut(s) 835
PkrI GCNGC 4 cut(s) 475, 511, 547, 688
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
Ppu21I YACGTR 1 cut(s) 669
PscI ACATGT 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 2 cut(s) 139, 145
PspPI GGNCC 3 cut(s) 132, 137, 199
PstNI CAGNNNCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 172, 848
RsaNI GTAC 2 cut(s) 171, 847
SapI GCTCTTC 1 cut(s) 499
SaqAI TTAA 2 cut(s) 54, 303
SatI GCNGC 4 cut(s) 474, 510, 546, 687
Sau96I GGNCC 3 cut(s) 132, 137, 199
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 3 cut(s) 141, 465, 578
SduI GDGCHC 2 cut(s) 256, 401
SfaNI GCATC 3 cut(s) 151, 784, 885
SinI GGWCC 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SnaBI TACGTA 1 cut(s) 669
Sse9I AATT 6 cut(s) 37, 188, 371, 498, 587, 807
SsiI CCGC 1 cut(s) 213
SspMI CTAG 4 cut(s) 321, 420, 615, 653
StyD4I CCNGG 3 cut(s) 139, 463, 576
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 4 cut(s) 19, 26, 403, 646
TaiI ACGT 2 cut(s) 72, 671
TaqI TCGA 2 cut(s) 186, 384
TasI AATT 6 cut(s) 37, 188, 371, 498, 587, 807
TfiI GAWTC 2 cut(s) 723, 911
Tru1I TTAA 2 cut(s) 54, 303
Tru9I TTAA 2 cut(s) 54, 303
TscAI CASTG 4 cut(s) 22, 406, 651, 742
TseFI GTSAC 2 cut(s) 91, 232
TseI GCWGC 4 cut(s) 473, 509, 545, 686
Tsp45I GTSAC 2 cut(s) 91, 232
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 4 cut(s) 22, 406, 651, 742
Van91I CCANNNNNTGG 1 cut(s) 835
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 132
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 188, 371
XceI RCATGY 1 cut(s) 447
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 4 cut(s) 321, 420, 615, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.