RLG00000026305

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000502
Physical Location & Seq
Forward (+)
2018154 .. 2021527
3374 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026305

Sequence Viewer

Length: 1062 bp
ATGGTTGCAACTAGAAGTTTGTTTGAAATGTTACTGGTTGCAACTAGAAGTTTGTTTGGGCCTTTGGGGCAAATTGTAAAACACAAAGACCAAAAGTCAGATCCATTTTCTCACCATGTGACCGAATCTCCCGGTAAAACTACGCAGAGCAGCAAAGGAGCGTCTTGGCCTTGCCTGATGTCACAGCCACCGGGAAAATCAAACTCGGAATCAATGGGTTTGGAAGAATTGGAAGATTGGTCACAAGAGTGGCTTTGGAAAGAGACGATATTGAGCTTGTTTGCATTAATGACCCCTACATCACGGCTGACTATATTTCGTGAAAATATAGTTGATCAGAAATTTGAGGAGTCGAATTATCGTGTGGACCAGGTCTACATGTTCAAGCACGACACCGTTCACAGTGCATGGAAGAATTGCGATGTGAAACTTAAGAATGCAAATCACGTTTACTTTGGTAACAAGGTAGTCACCATTTTTGCAATCAGCCGAGAAGACGAAATCCCTTGGTCTGGCCCCGGAGCCGAATACATCGTGGATGCCTCTGGTACTGCCACCGAAATCGAATTTGCTCAGGGCCATTTGAAGGTAATTCATGATAAATTTGGTATCATCGAGGGTCTGATGAGCACTGTTCATTCAGTTACTGCTAGCCAAAGAGGTGTTGATGGAACATGTCCTAATGATTGGAGACCTGGAAAAGCTGCACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCCACTACTACCGGAGCTGCTAAGGCTGTTGGTAAAGTTCTACCTGACCTAGATGGTAAATTGACCGGAATGTCATTCCGTGTTCCTTGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGACTAGAAAAGCCGGCTACGTATGAGGAAATAAAAGCTGCCATCAAGGAAGAGTCTGAGGGAAACCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTGGTCTCTACTGACTTTGAGCATGACAGCAGCACTCGCATCGTTGACTTGATGACCTACATTGCGTCATTTGATTCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

354

Amino Acids

39.2

Weight (kDa)

5.44

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 124 - 186 7.2e-07 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 195 - 236 2.4e-10 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 238 - 344 1.4e-41 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 829
AccI GTMKAC 2 cut(s) 375, 867
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 3 cut(s) 341, 566, 602
AcuI CTGAAG 2 cut(s) 968, 990
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 512, 586
AflII CTTAAG 1 cut(s) 431
AflIII ACRYGT 2 cut(s) 378, 674
AgsI TTSAA 4 cut(s) 26, 385, 586, 1056
AhdI GACNNNNNGTC 1 cut(s) 94
AjnI CCWGG 2 cut(s) 369, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 941, 973
AleI CACNNNNGTG 1 cut(s) 247
AluBI AGCT 5 cut(s) 276, 704, 740, 776, 917
AluI AGCT 5 cut(s) 276, 704, 740, 776, 917
Alw21I GWGCWC 1 cut(s) 632
Alw26I GTCTC 4 cut(s) 257, 685, 874, 988
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 4 cut(s) 59, 167, 514, 577
ApeKI GCWGC 6 cut(s) 150, 704, 740, 776, 917, 1008
ApoI RAATTY 3 cut(s) 341, 566, 602
AseI ATTAAT 1 cut(s) 287
AspS9I GGNCC 4 cut(s) 59, 367, 515, 577
AsuC2I CCSGG 3 cut(s) 132, 192, 519
AsuHPI GGTGA 2 cut(s) 104, 463
AsuNHI GCTAGC 1 cut(s) 650
AvaII GGWCC 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 632
BbvI GCAGC 6 cut(s) 162, 691, 727, 763, 904, 1020
BccI CCATC 3 cut(s) 662, 806, 929
BceAI ACGGC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 1000, 1034
BciT130I CCWGG 2 cut(s) 371, 696
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 3 cut(s) 132, 192, 519
BcoDI GTCTC 4 cut(s) 257, 685, 874, 988
BfaI CTAG 5 cut(s) 12, 45, 651, 809, 884
BfrI CTTAAG 1 cut(s) 431
BglI GCCNNNNNGGC 1 cut(s) 67
BisI GCNGC 6 cut(s) 151, 705, 741, 777, 918, 1009
BlsI GCNGC 6 cut(s) 152, 706, 742, 778, 919, 1010
Bme1390I CCNGG 5 cut(s) 132, 192, 371, 519, 696
Bme18I GGWCC 1 cut(s) 367
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgT120I GGNCC 4 cut(s) 59, 367, 515, 577
BmiI GGNNCC 2 cut(s) 517, 523
BmrFI CCNGG 5 cut(s) 132, 192, 371, 519, 696
BmsI GCATC 2 cut(s) 529, 1026
BmtI GCTAGC 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 501
Bpu10I CCTNAGC 2 cut(s) 573, 780
BpuMI CCSGG 3 cut(s) 132, 192, 519
BsaAI YACGTR 1 cut(s) 900
BsaI GGTCTC 2 cut(s) 685, 988
BsaJI CCNNGG 2 cut(s) 506, 517
BsaWI WCCGGW 2 cut(s) 770, 824
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 586
Bse118I RCCGGY 1 cut(s) 892
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 1038
BseBI CCWGG 2 cut(s) 371, 696
BseDI CCNNGG 2 cut(s) 506, 517
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 2 cut(s) 512, 586
BseMI GCAATG 1 cut(s) 1038
BseMII CTCAG 2 cut(s) 587, 927
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 6 cut(s) 162, 691, 727, 763, 904, 1020
BsgI GTGCAG 1 cut(s) 690
BshFI GGCC 4 cut(s) 61, 169, 516, 579
BsiHKAI GWGCWC 1 cut(s) 632
BsiSI CCGG 6 cut(s) 132, 191, 519, 771, 825, 893
BslI CCNNNNNNNGG 2 cut(s) 512, 586
BsmAI GTCTC 4 cut(s) 257, 685, 874, 988
BsmBI CGTCTC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 4 cut(s) 61, 169, 516, 579
Bso31I GGTCTC 2 cut(s) 685, 988
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 2 cut(s) 100, 334
BspANI GGCC 4 cut(s) 61, 169, 516, 579
BspCNI CTCAG 2 cut(s) 586, 928
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 517, 523
BspOI GCTAGC 1 cut(s) 654
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 730
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 2 cut(s) 685, 988
BsrDI GCAATG 1 cut(s) 1038
BsrFI RCCGGY 1 cut(s) 892
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 892
BssECI CCNNGG 2 cut(s) 506, 517
BssMI GATC 2 cut(s) 100, 334
BssT1I CCWWGG 1 cut(s) 506
Bst2UI CCWGG 2 cut(s) 371, 696
Bst4CI ACNGT 4 cut(s) 397, 404, 634, 877
Bst6I CTCTTC 2 cut(s) 730, 924
BstAFI CTTAAG 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 900
BstC8I GCNNGC 2 cut(s) 652, 894
BstDEI CTNAG 3 cut(s) 573, 780, 936
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 2 cut(s) 103, 337
BstMAI GTCTC 4 cut(s) 257, 685, 874, 988
BstMBI GATC 2 cut(s) 100, 334
BstMWI GCNNNNNNNGC 3 cut(s) 67, 782, 1014
BstNI CCWGG 2 cut(s) 371, 696
BstNSI RCATGY 2 cut(s) 382, 678
BstSCI CCNGG 5 cut(s) 130, 190, 369, 517, 694
BstSNI TACGTA 1 cut(s) 900
BstV1I GCAGC 6 cut(s) 162, 691, 727, 763, 904, 1020
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 4 cut(s) 61, 169, 516, 579
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 544
BtsIMutI CAGTG 4 cut(s) 409, 630, 882, 966
Cac8I GCNNGC 2 cut(s) 652, 894
CaiI CAGNNNCTG 1 cut(s) 647
CciI TCATGA 1 cut(s) 595
Cfr10I RCCGGY 1 cut(s) 892
Cfr13I GGNCC 4 cut(s) 59, 367, 515, 577
CseI GACGC 2 cut(s) 150, 1032
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 1 cut(s) 549
CviAII CATG 6 cut(s) 116, 379, 408, 596, 675, 1001
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 3 cut(s) 573, 780, 936
DpnI GATC 2 cut(s) 102, 336
DpnII GATC 2 cut(s) 100, 334
DraIII CACNNNGTG 1 cut(s) 118
DrdI GACNNNNNNGTC 1 cut(s) 829
DriI GACNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 829
Eam1104I CTCTTC 2 cut(s) 730, 924
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 2 cut(s) 730, 924
Eco105I TACGTA 1 cut(s) 900
Eco130I CCWWGG 1 cut(s) 506
Eco31I GGTCTC 2 cut(s) 685, 988
Eco47I GGWCC 1 cut(s) 367
Eco57I CTGAAG 2 cut(s) 968, 990
EcoRII CCWGG 2 cut(s) 369, 694
EcoT14I CCWWGG 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 506
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 6 cut(s) 119, 382, 411, 599, 678, 1004
FalI AAGNNNNNCTT 6 cut(s) 237, 269, 727, 759, 941, 973
FatI CATG 6 cut(s) 115, 378, 407, 595, 674, 1000
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 2 cut(s) 375, 867
Fnu4HI GCNGC 6 cut(s) 151, 705, 741, 777, 918, 1009
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 6 cut(s) 151, 705, 741, 777, 918, 1009
FspBI CTAG 5 cut(s) 12, 45, 651, 809, 884
GluI GCNGC 6 cut(s) 151, 705, 741, 777, 918, 1009
HaeIII GGCC 4 cut(s) 61, 169, 516, 579
HapII CCGG 6 cut(s) 132, 191, 519, 771, 825, 893
HgaI GACGC 2 cut(s) 150, 1032
Hin1II CATG 6 cut(s) 119, 382, 411, 599, 678, 1004
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HinfI GANTC 6 cut(s) 125, 209, 350, 932, 954, 1052
HpaII CCGG 6 cut(s) 132, 191, 519, 771, 825, 893
HphI GGTGA 2 cut(s) 104, 463
Hpy166II GTNNAC 6 cut(s) 367, 376, 400, 451, 868, 1024
Hpy188I TCNGA 5 cut(s) 100, 208, 339, 624, 937
Hpy188III TCNNGA 3 cut(s) 320, 596, 851
Hpy8I GTNNAC 6 cut(s) 367, 376, 400, 451, 868, 1024
HpyAV CCTTC 2 cut(s) 580, 943
HpyCH4III ACNGT 4 cut(s) 397, 404, 634, 877
HpyCH4IV ACGT 2 cut(s) 447, 899
HpyCH4V TGCA 7 cut(s) 8, 41, 284, 407, 440, 482, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 782, 1014
HpyF3I CTNAG 3 cut(s) 573, 780, 936
HpySE526I ACGT 2 cut(s) 447, 899
Hsp92II CATG 6 cut(s) 119, 382, 411, 599, 678, 1004
KroI GCCGGC 1 cut(s) 892
KroNI GCCGGC 1 cut(s) 894
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 100, 334
LguI GCTCTTC 1 cut(s) 730
LmnI GCTCC 3 cut(s) 158, 521, 773
Lsp1109I GCAGC 6 cut(s) 162, 691, 727, 763, 904, 1020
LweI GCATC 2 cut(s) 529, 1026
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 5 cut(s) 12, 45, 651, 809, 884
MaeII ACGT 2 cut(s) 447, 899
MaeIII GTNAC 8 cut(s) 30, 118, 180, 240, 458, 469, 643, 962
MalI GATC 2 cut(s) 102, 336
MboI GATC 2 cut(s) 100, 334
MboII GAAGA 7 cut(s) 236, 245, 424, 506, 747, 941, 983
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 632
MlyI GAGTC 2 cut(s) 359, 941
MnlI CCTC 6 cut(s) 340, 553, 610, 653, 898, 931
MroNI GCCGGC 1 cut(s) 892
MseI TTAA 2 cut(s) 287, 432
MslI CAYNNNNRTG 1 cut(s) 247
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 6 cut(s) 132, 191, 519, 771, 825, 893
MspR9I CCNGG 5 cut(s) 132, 192, 371, 519, 696
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 2 cut(s) 371, 696
MwoI GCNNNNNNNGC 3 cut(s) 67, 782, 1014
NaeI GCCGGC 1 cut(s) 894
NciI CCSGG 3 cut(s) 132, 192, 519
NdeII GATC 2 cut(s) 100, 334
NgoMIV GCCGGC 1 cut(s) 892
NheI GCTAGC 1 cut(s) 650
NlaIII CATG 6 cut(s) 119, 382, 411, 599, 678, 1004
NlaIV GGNNCC 2 cut(s) 517, 523
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 4 cut(s) 118, 180, 240, 469
NspI RCATGY 2 cut(s) 382, 678
OliI CACNNNNGTG 1 cut(s) 247
PagI TCATGA 1 cut(s) 595
PciI ACATGT 2 cut(s) 378, 674
PciSI GCTCTTC 1 cut(s) 730
PctI GAATGC 1 cut(s) 442
PdiI GCCGGC 1 cut(s) 894
PfeI GAWTC 4 cut(s) 125, 209, 954, 1052
PflFI GACNNNGTC 1 cut(s) 371
PkrI GCNGC 6 cut(s) 152, 706, 742, 778, 919, 1010
PleI GAGTC 2 cut(s) 358, 940
PpsI GAGTC 2 cut(s) 358, 940
Ppu21I YACGTR 1 cut(s) 900
PscI ACATGT 2 cut(s) 378, 674
PshBI ATTAAT 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 369, 694
PspGI CCWGG 2 cut(s) 369, 694
PspN4I GGNNCC 2 cut(s) 517, 523
PspPI GGNCC 4 cut(s) 59, 367, 515, 577
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 730
SaqAI TTAA 2 cut(s) 287, 432
SatI GCNGC 6 cut(s) 151, 705, 741, 777, 918, 1009
Sau3AI GATC 2 cut(s) 100, 334
Sau96I GGNCC 4 cut(s) 59, 367, 515, 577
SchI GAGTC 2 cut(s) 359, 941
ScrFI CCNGG 5 cut(s) 132, 192, 371, 519, 696
SduI GDGCHC 1 cut(s) 632
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 2 cut(s) 529, 1026
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SnaBI TACGTA 1 cut(s) 900
SspMI CTAG 5 cut(s) 12, 45, 651, 809, 884
StyD4I CCNGG 5 cut(s) 130, 190, 369, 517, 694
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 4 cut(s) 397, 404, 634, 877
TaiI ACGT 2 cut(s) 450, 902
TaqI TCGA 3 cut(s) 353, 564, 615
TaqII GACCGA 1 cut(s) 137
TfiI GAWTC 4 cut(s) 125, 209, 954, 1052
Tru1I TTAA 2 cut(s) 287, 432
Tru9I TTAA 2 cut(s) 287, 432
TscAI CASTG 4 cut(s) 409, 637, 882, 973
TseFI GTSAC 4 cut(s) 118, 180, 240, 469
TseI GCWGC 6 cut(s) 150, 704, 740, 776, 917, 1008
Tsp45I GTSAC 4 cut(s) 118, 180, 240, 469
TspDTI ATGAA 2 cut(s) 584, 626
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 4 cut(s) 409, 637, 882, 973
Tth111I GACNNNGTC 1 cut(s) 371
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 367
VspI ATTAAT 1 cut(s) 287
XapI RAATTY 3 cut(s) 341, 566, 602
XceI RCATGY 2 cut(s) 382, 678
XmiI GTMKAC 2 cut(s) 375, 867
XspI CTAG 5 cut(s) 12, 45, 651, 809, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.