Rh7DG117900

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000502
Physical Location & Seq
Reverse (-)
9931504 .. 9934141
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG117900.1

Sequence Viewer

Length: 774 bp
ATGTTCAAGCACGACACTATTTACGGTGCATGGAAGAATTGTGAGGTGAAACTTAAGAATGCAAACCACGTTTACTTTGGTAACAAGGAAGTCACCATTTTTGCAATCAGCCGAGAAGACGAAATCCCTTGGTCCGGTCCCGGAGCCGAATATATCGTGGATGCCATTGGTACTGCCACCAAAATCAAATTTGCTCAGGGCCATTTGAAGGTCATTCATGATAAATTTGGAATCATCGAGGGTATGATGAGCACTGTTCACCAAGTTACTGCTAGCCAAAGAGGTGTTGATGGAACATGTCCTAATGATTGGAGACCTGGAAAAGCTGCACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCCACTACTACCGGAGCTGCTAAGGCTGTTGGTAAAGTTCTACCTGACCTGGATGGTAAATTGACCGGAATGTCATTCCGTGTTCCTAGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGGCTAGAAAAGCCGGCTACGTATAAGGAAATAAAAGCTGCCATCAAGGAAGAGTCTGAGGGAAACCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTGGTCTCTACCGACTTTGAGCATGACAGCAGGTCAAGTATTTTTGATGCAAAGGCCGGAATTGCTTTGAACGATAACTTCCACAAGTTGGTCGCATGGTACGACAACGAGTGGGGATACAGCACTCGCAACGTTGACTTGATGACCTATATTGCGTCATTTGATTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

257

Amino Acids

28.38

Weight (kDa)

5.99

Isoelectric Point (pI)

19.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 1 - 60 9e-06 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 69 - 110 3e-10 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 112 - 234 3.2e-49 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 451
Acc36I ACCTGC 1 cut(s) 621
AccB7I CCANNNNNTGG 1 cut(s) 688
AccI GTMKAC 1 cut(s) 489
AclI AACGTT 1 cut(s) 732
AcsI RAATTY 2 cut(s) 188, 224
AcuI CTGAAG 2 cut(s) 590, 612
AfaI GTAC 2 cut(s) 172, 701
AfiI CCNNNNNNNGG 3 cut(s) 134, 208, 688
AflII CTTAAG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 296
AgsI TTSAA 3 cut(s) 7, 208, 670
AhdI GACNNNNNGTC 1 cut(s) 631
AjnI CCWGG 2 cut(s) 316, 429
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 4 cut(s) 326, 362, 398, 539
AluI AGCT 4 cut(s) 326, 362, 398, 539
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 2 cut(s) 307, 610
AoxI GGCC 2 cut(s) 199, 654
ApeKI GCWGC 4 cut(s) 326, 362, 398, 539
ApoI RAATTY 2 cut(s) 188, 224
AspS9I GGNCC 3 cut(s) 132, 137, 199
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 58, 85, 251
AsuNHI GCTAGC 1 cut(s) 272
AvaII GGWCC 2 cut(s) 132, 137
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 4 cut(s) 313, 349, 385, 526
BccI CCATC 3 cut(s) 284, 428, 551
BciT130I CCWGG 2 cut(s) 318, 431
BciVI GTATCC 1 cut(s) 710
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 307, 610
BfaI CTAG 3 cut(s) 273, 468, 506
BfrI CTTAAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 621
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 4 cut(s) 327, 363, 399, 540
BlsI GCNGC 4 cut(s) 328, 364, 400, 541
Bme1390I CCNGG 3 cut(s) 141, 318, 431
Bme18I GGWCC 2 cut(s) 132, 137
BmeRI GACNNNNNGTC 1 cut(s) 631
BmgT120I GGNCC 3 cut(s) 132, 137, 199
BmiI GGNNCC 2 cut(s) 139, 145
BmrFI CCNGG 3 cut(s) 141, 318, 431
BmsI GCATC 2 cut(s) 151, 637
BmtI GCTAGC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 195, 402
BpuMI CCSGG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 522
BsaI GGTCTC 2 cut(s) 307, 610
BsaJI CCNNGG 1 cut(s) 128
BsaWI WCCGGW 3 cut(s) 134, 392, 446
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 208, 688
Bse118I RCCGGY 1 cut(s) 514
BseBI CCWGG 2 cut(s) 318, 431
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 166, 439
BseLI CCNNNNNNNGG 3 cut(s) 134, 208, 688
BseMII CTCAG 2 cut(s) 209, 549
BseXI GCAGC 4 cut(s) 313, 349, 385, 526
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 2 cut(s) 201, 656
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 6 cut(s) 135, 141, 393, 447, 515, 657
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 3 cut(s) 134, 208, 688
BsmAI GTCTC 2 cut(s) 307, 610
BsmFI GGGAC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 201, 656
Bso31I GGTCTC 2 cut(s) 307, 610
Bsp1286I GDGCHC 1 cut(s) 254
BspANI GGCC 2 cut(s) 201, 656
BspCNI CTCAG 2 cut(s) 208, 550
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 139, 145
BspMI ACCTGC 1 cut(s) 621
BspOI GCTAGC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 352
BspTI CTTAAG 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 307, 610
BsrFI RCCGGY 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 2 cut(s) 318, 431
Bst4CI ACNGT 3 cut(s) 26, 256, 499
Bst6I CTCTTC 2 cut(s) 352, 546
BstAFI CTTAAG 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 274, 516
BstDEI CTNAG 3 cut(s) 195, 402, 558
BstF5I GGATG 2 cut(s) 166, 439
BstMAI GTCTC 2 cut(s) 307, 610
BstMWI GCNNNNNNNGC 3 cut(s) 404, 511, 662
BstNI CCWGG 2 cut(s) 318, 431
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 3 cut(s) 139, 316, 429
BstSNI TACGTA 1 cut(s) 522
BstV1I GCAGC 4 cut(s) 313, 349, 385, 526
BstV2I GAAGAC 1 cut(s) 123
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 2 cut(s) 201, 656
BtsCI GGATG 2 cut(s) 166, 439
BtsIMutI CAGTG 3 cut(s) 252, 504, 588
BveI ACCTGC 1 cut(s) 621
Cac8I GCNNGC 2 cut(s) 274, 516
CciI TCATGA 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 3 cut(s) 132, 137, 199
CseI GACGC 1 cut(s) 744
Csp6I GTAC 2 cut(s) 171, 700
CviAII CATG 5 cut(s) 30, 218, 297, 623, 696
CviQI GTAC 2 cut(s) 171, 700
DdeI CTNAG 3 cut(s) 195, 402, 558
DrdI GACNNNNNNGTC 1 cut(s) 451
DriI GACNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 451
Eam1104I CTCTTC 2 cut(s) 352, 546
Eam1105I GACNNNNNGTC 1 cut(s) 631
EarI CTCTTC 2 cut(s) 352, 546
Eco105I TACGTA 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 2 cut(s) 307, 610
Eco47I GGWCC 2 cut(s) 132, 137
Eco57I CTGAAG 2 cut(s) 590, 612
EcoRII CCWGG 2 cut(s) 316, 429
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 5 cut(s) 33, 221, 300, 626, 699
FalI AAGNNNNNCTT 4 cut(s) 349, 381, 563, 595
FaqI GGGAC 1 cut(s) 123
FatI CATG 5 cut(s) 29, 217, 296, 622, 695
FblI GTMKAC 1 cut(s) 489
Fnu4HI GCNGC 4 cut(s) 327, 363, 399, 540
FokI GGATG 2 cut(s) 173, 446
Fsp4HI GCNGC 4 cut(s) 327, 363, 399, 540
FspBI CTAG 3 cut(s) 273, 468, 506
GluI GCNGC 4 cut(s) 327, 363, 399, 540
HaeIII GGCC 2 cut(s) 201, 656
HapII CCGG 6 cut(s) 135, 141, 393, 447, 515, 657
HgaI GACGC 1 cut(s) 744
Hin1II CATG 5 cut(s) 33, 221, 300, 626, 699
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HinfI GANTC 4 cut(s) 231, 554, 576, 764
HpaII CCGG 6 cut(s) 135, 141, 393, 447, 515, 657
HphI GGTGA 3 cut(s) 58, 85, 251
Hpy166II GTNNAC 4 cut(s) 73, 259, 490, 736
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 2 cut(s) 218, 473
Hpy8I GTNNAC 4 cut(s) 73, 259, 490, 736
HpyAV CCTTC 2 cut(s) 202, 565
HpyCH4III ACNGT 3 cut(s) 26, 256, 499
HpyCH4IV ACGT 3 cut(s) 69, 521, 732
HpyCH4V TGCA 5 cut(s) 29, 62, 104, 329, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 511, 662
HpyF3I CTNAG 3 cut(s) 195, 402, 558
HpySE526I ACGT 3 cut(s) 69, 521, 732
Hsp92II CATG 5 cut(s) 33, 221, 300, 626, 699
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
LguI GCTCTTC 1 cut(s) 352
LmnI GCTCC 2 cut(s) 143, 395
Lsp1109I GCAGC 4 cut(s) 313, 349, 385, 526
LweI GCATC 2 cut(s) 151, 637
MaeI CTAG 3 cut(s) 273, 468, 506
MaeII ACGT 3 cut(s) 69, 521, 732
MaeIII GTNAC 4 cut(s) 80, 91, 265, 584
MboII GAAGA 5 cut(s) 46, 128, 369, 563, 605
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 6 cut(s) 37, 188, 224, 351, 440, 660
MlyI GAGTC 1 cut(s) 563
MnlI CCTC 5 cut(s) 37, 232, 275, 495, 553
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 1 cut(s) 54
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 6 cut(s) 135, 141, 393, 447, 515, 657
MspR9I CCNGG 3 cut(s) 141, 318, 431
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 2 cut(s) 318, 431
MwoI GCNNNNNNNGC 3 cut(s) 404, 511, 662
NaeI GCCGGC 1 cut(s) 516
NciI CCSGG 1 cut(s) 141
NgoMIV GCCGGC 1 cut(s) 514
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 5 cut(s) 33, 221, 300, 626, 699
NlaIV GGNNCC 2 cut(s) 139, 145
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 1 cut(s) 300
PagI TCATGA 1 cut(s) 217
PciI ACATGT 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 699
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 3 cut(s) 231, 576, 764
PflMI CCANNNNNTGG 1 cut(s) 688
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 4 cut(s) 328, 364, 400, 541
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
Ppu21I YACGTR 1 cut(s) 522
PscI ACATGT 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 732
Psp6I CCWGG 2 cut(s) 316, 429
PspGI CCWGG 2 cut(s) 316, 429
PspN4I GGNNCC 2 cut(s) 139, 145
PspPI GGNCC 3 cut(s) 132, 137, 199
RsaI GTAC 2 cut(s) 172, 701
RsaNI GTAC 2 cut(s) 171, 700
SapI GCTCTTC 1 cut(s) 352
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 4 cut(s) 327, 363, 399, 540
Sau96I GGNCC 3 cut(s) 132, 137, 199
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 3 cut(s) 141, 318, 431
SduI GDGCHC 1 cut(s) 254
SfaNI GCATC 2 cut(s) 151, 637
SinI GGWCC 2 cut(s) 132, 137
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SnaBI TACGTA 1 cut(s) 522
Sse9I AATT 6 cut(s) 37, 188, 224, 351, 440, 660
SspMI CTAG 3 cut(s) 273, 468, 506
StyD4I CCNGG 3 cut(s) 139, 316, 429
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 3 cut(s) 26, 256, 499
TaiI ACGT 3 cut(s) 72, 524, 735
TaqI TCGA 1 cut(s) 237
TasI AATT 6 cut(s) 37, 188, 224, 351, 440, 660
TfiI GAWTC 3 cut(s) 231, 576, 764
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 3 cut(s) 259, 504, 595
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 4 cut(s) 326, 362, 398, 539
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 3 cut(s) 259, 504, 595
Van91I CCANNNNNTGG 1 cut(s) 688
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 132, 137
XapI RAATTY 2 cut(s) 188, 224
XceI RCATGY 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 489
XspI CTAG 3 cut(s) 273, 468, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.