Rmu_sc0000033.1_g000020

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000033.1
OG0000502
Physical Location & Seq
Reverse (-)
91135 .. 94247
3113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000033.1_g000020.1.cds

Sequence Viewer

Length: 933 bp
atgtattgggatttaactccaataagcttcggcgggattcgaacccgaaaatttgaggagtcgaattatcgtgtggaccaggtctacatgttcaagcacgacactgtccacggtgcatggaagaattgcgatgtgaaacttaagaatgcaaatcacgtttactttggtaacaaggtagtcaccatttttgcaatcagccaagaagacgaaatcccttggtctggccccggagctgaatacatcgtggatgcctctggtactgccaccgaaatcgaatttgctcagggccatttgaagggcggagcaaagaaggttattgtcacttgcccgtgtgatggtgctcctacgtttgttgtgggtgtcaatgagaaggaatacaagccggagcttaatgttgtttccggtgctagttgcaccaccaactgccttgccccccttgcaaaggtaattcatgataaatttggtatcatcgagggtctgatgagcactgttcactcagttactgctagccaaagaggtgttgatggaacatgtcataatgattggagacctggaaaagctgcaccaactattaaagatgggagaattggaagagctgcttatatcaacatcattcccactaataccggagctgctaaggttgttggtaaagttctacctgacctggatggtaaattgaccggaatgtcattccgtgttcctagtcttgatgtttcggtggtagacctaacagtgagactagaaaagccagctacggaagagtctgaggggaacctgaagggaatcttgggttacactgaagatgatgtagtctctactgactttgagcgtgacagcaggtcaagtatttttgatgcaaaggccggaattgctttgaacgataacttccacaagttggttgcatggtacgacaacgagtggggatacaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

310

Amino Acids

33.91

Weight (kDa)

5.79

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 685
Acc36I ACCTGC 1 cut(s) 828
AccB7I CCANNNNNTGG 1 cut(s) 895
AccI GTMKAC 2 cut(s) 84, 723
AciI CCGC 2 cut(s) 33, 300
AcsI RAATTY 3 cut(s) 50, 275, 458
AcuI CTGAAG 2 cut(s) 797, 819
AfaI GTAC 2 cut(s) 259, 908
AfiI CCNNNNNNNGG 5 cut(s) 221, 295, 335, 442, 895
AflII CTTAAG 1 cut(s) 140
AflIII ACRYGT 2 cut(s) 87, 530
AgsI TTSAA 3 cut(s) 94, 295, 877
AhdI GACNNNNNGTC 1 cut(s) 838
AjnI CCWGG 3 cut(s) 78, 550, 663
AjuI GAANNNNNNNTTGG 2 cut(s) 770, 802
AluBI AGCT 7 cut(s) 27, 233, 388, 560, 596, 632, 752
AluI AGCT 7 cut(s) 27, 233, 388, 560, 596, 632, 752
Alw21I GWGCWC 2 cut(s) 343, 488
Alw26I GTCTC 3 cut(s) 541, 730, 817
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 3 cut(s) 223, 286, 861
ApeKI GCWGC 3 cut(s) 560, 596, 632
ApoI RAATTY 3 cut(s) 50, 275, 458
AspS9I GGNCC 3 cut(s) 76, 224, 286
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 172
AsuII TTCGAA 1 cut(s) 40
AsuNHI GCTAGC 1 cut(s) 506
AvaII GGWCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 2 cut(s) 343, 488
BbvI GCAGC 3 cut(s) 547, 583, 619
BccI CCATC 4 cut(s) 329, 518, 572, 662
BciT130I CCWGG 3 cut(s) 80, 552, 665
BciVI GTATCC 1 cut(s) 917
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 3 cut(s) 541, 730, 817
BfaI CTAG 4 cut(s) 408, 507, 702, 740
BfrI CTTAAG 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 828
BfuI GTATCC 1 cut(s) 917
BisI GCNGC 3 cut(s) 561, 597, 633
BlsI GCNGC 3 cut(s) 562, 598, 634
Bme1390I CCNGG 4 cut(s) 80, 228, 552, 665
Bme18I GGWCC 1 cut(s) 76
BmeRI GACNNNNNGTC 1 cut(s) 838
BmgT120I GGNCC 3 cut(s) 76, 224, 286
BmiI GGNNCC 2 cut(s) 226, 773
BmrFI CCNGG 4 cut(s) 80, 228, 552, 665
BmsI GCATC 2 cut(s) 238, 844
BmtI GCTAGC 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 2 cut(s) 282, 636
Bpu14I TTCGAA 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 3 cut(s) 109, 215, 226
BsaWI WCCGGW 3 cut(s) 401, 626, 680
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 295, 335, 442, 895
BseBI CCWGG 3 cut(s) 80, 552, 665
BseDI CCNNGG 3 cut(s) 109, 215, 226
BseGI GGATG 2 cut(s) 253, 673
BseLI CCNNNNNNNGG 5 cut(s) 221, 295, 335, 442, 895
BseMII CTCAG 3 cut(s) 296, 510, 756
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 547, 583, 619
BsgI GTGCAG 1 cut(s) 546
BshFI GGCC 3 cut(s) 225, 288, 863
BsiHKAI GWGCWC 2 cut(s) 343, 488
BsiSI CCGG 6 cut(s) 228, 383, 402, 627, 681, 864
BslI CCNNNNNNNGG 5 cut(s) 221, 295, 335, 442, 895
BsmAI GTCTC 3 cut(s) 541, 730, 817
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 3 cut(s) 225, 288, 863
Bso31I GGTCTC 1 cut(s) 541
Bsp119I TTCGAA 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 343, 488
BspACI CCGC 2 cut(s) 33, 300
BspANI GGCC 3 cut(s) 225, 288, 863
BspCNI CTCAG 3 cut(s) 295, 509, 757
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 226, 773
BspMI ACCTGC 1 cut(s) 828
BspOI GCTAGC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 586
BspT104I TTCGAA 1 cut(s) 40
BspTI CTTAAG 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 109, 215, 226
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 3 cut(s) 80, 552, 665
Bst4CI ACNGT 4 cut(s) 106, 113, 490, 733
Bst6I CTCTTC 2 cut(s) 586, 753
BstAFI CTTAAG 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 508, 750
BstDEI CTNAG 4 cut(s) 282, 496, 636, 765
BstDSI CCRYGG 1 cut(s) 109
BstENI CCTNNNNNAGG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 253, 673
BstMAI GTCTC 3 cut(s) 541, 730, 817
BstMWI GCNNNNNNNGC 2 cut(s) 437, 869
BstNI CCWGG 3 cut(s) 80, 552, 665
BstNSI RCATGY 2 cut(s) 91, 534
BstSCI CCNGG 4 cut(s) 78, 226, 550, 663
BstV1I GCAGC 3 cut(s) 547, 583, 619
BstV2I GAAGAC 1 cut(s) 210
BsuI GTATCC 1 cut(s) 917
BsuRI GGCC 3 cut(s) 225, 288, 863
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 253, 673
BtsIMutI CAGTG 4 cut(s) 102, 486, 738, 795
BveI ACCTGC 1 cut(s) 828
Cac8I GCNNGC 2 cut(s) 508, 750
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 76, 224, 286
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 258, 907
CviAII CATG 5 cut(s) 88, 117, 452, 531, 903
CviQI GTAC 2 cut(s) 258, 907
DdeI CTNAG 4 cut(s) 282, 496, 636, 765
DrdI GACNNNNNNGTC 1 cut(s) 685
DriI GACNNNNNGTC 1 cut(s) 838
DseDI GACNNNNNNGTC 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 586, 753
Eam1105I GACNNNNNGTC 1 cut(s) 838
EarI CTCTTC 2 cut(s) 586, 753
EciI GGCGGA 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 797, 819
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoRII CCWGG 3 cut(s) 78, 550, 663
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 5 cut(s) 91, 120, 455, 534, 906
FaiI YATR 7 cut(s) 89, 118, 453, 532, 537, 603, 904
FalI AAGNNNNNCTT 4 cut(s) 583, 615, 770, 802
FatI CATG 5 cut(s) 87, 116, 451, 530, 902
FauI CCCGC 1 cut(s) 26
FblI GTMKAC 2 cut(s) 84, 723
Fnu4HI GCNGC 3 cut(s) 561, 597, 633
FokI GGATG 2 cut(s) 260, 680
Fsp4HI GCNGC 3 cut(s) 561, 597, 633
FspBI CTAG 4 cut(s) 408, 507, 702, 740
GluI GCNGC 3 cut(s) 561, 597, 633
HaeIII GGCC 3 cut(s) 225, 288, 863
HapII CCGG 6 cut(s) 228, 383, 402, 627, 681, 864
Hin1II CATG 5 cut(s) 91, 120, 455, 534, 906
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 4 cut(s) 37, 59, 761, 783
HpaII CCGG 6 cut(s) 228, 383, 402, 627, 681, 864
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 6 cut(s) 76, 85, 109, 160, 493, 724
Hpy188I TCNGA 2 cut(s) 480, 766
Hpy188III TCNNGA 2 cut(s) 452, 707
Hpy8I GTNNAC 6 cut(s) 76, 85, 109, 160, 493, 724
HpyAV CCTTC 4 cut(s) 289, 304, 364, 772
HpyCH4III ACNGT 4 cut(s) 106, 113, 490, 733
HpyCH4IV ACGT 2 cut(s) 156, 347
HpyCH4V TGCA 8 cut(s) 116, 149, 191, 414, 440, 563, 857, 902
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 869
HpyF3I CTNAG 4 cut(s) 282, 496, 636, 765
HpySE526I ACGT 2 cut(s) 156, 347
Hsp92II CATG 5 cut(s) 91, 120, 455, 534, 906
LguI GCTCTTC 1 cut(s) 586
LmnI GCTCC 5 cut(s) 230, 302, 346, 385, 629
Lsp1109I GCAGC 3 cut(s) 547, 583, 619
LweI GCATC 2 cut(s) 238, 844
MabI ACCWGGT 1 cut(s) 78
MaeI CTAG 4 cut(s) 408, 507, 702, 740
MaeII ACGT 2 cut(s) 156, 347
MaeIII GTNAC 6 cut(s) 167, 178, 319, 499, 791, 830
MboII GAAGA 5 cut(s) 133, 215, 603, 770, 812
MhlI GDGCHC 2 cut(s) 343, 488
MluCI AATT 9 cut(s) 50, 64, 124, 275, 447, 458, 585, 674, 867
MlyI GAGTC 2 cut(s) 68, 770
MnlI CCTC 5 cut(s) 49, 262, 466, 509, 760
MseI TTAA 4 cut(s) 14, 141, 390, 573
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 6 cut(s) 228, 383, 402, 627, 681, 864
MspR9I CCNGG 4 cut(s) 80, 228, 552, 665
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 3 cut(s) 80, 552, 665
MwoI GCNNNNNNNGC 2 cut(s) 437, 869
NciI CCSGG 1 cut(s) 228
NheI GCTAGC 1 cut(s) 506
NlaIII CATG 5 cut(s) 91, 120, 455, 534, 906
NlaIV GGNNCC 2 cut(s) 226, 773
NmuCI GTSAC 3 cut(s) 178, 319, 830
NspI RCATGY 2 cut(s) 91, 534
NspV TTCGAA 1 cut(s) 40
PagI TCATGA 1 cut(s) 451
PciI ACATGT 2 cut(s) 87, 530
PciSI GCTCTTC 1 cut(s) 586
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 37, 783
PflFI GACNNNGTC 2 cut(s) 80, 104
PflMI CCANNNNNTGG 1 cut(s) 895
PkrI GCNGC 3 cut(s) 562, 598, 634
PleI GAGTC 2 cut(s) 67, 769
PpsI GAGTC 2 cut(s) 67, 769
PscI ACATGT 2 cut(s) 87, 530
Psp6I CCWGG 3 cut(s) 78, 550, 663
PspGI CCWGG 3 cut(s) 78, 550, 663
PspN4I GGNNCC 2 cut(s) 226, 773
PspPI GGNCC 3 cut(s) 76, 224, 286
PstNI CAGNNNCTG 1 cut(s) 503
PsyI GACNNNGTC 2 cut(s) 80, 104
RsaI GTAC 2 cut(s) 259, 908
RsaNI GTAC 2 cut(s) 258, 907
SapI GCTCTTC 1 cut(s) 586
SaqAI TTAA 4 cut(s) 14, 141, 390, 573
SatI GCNGC 3 cut(s) 561, 597, 633
Sau96I GGNCC 3 cut(s) 76, 224, 286
SchI GAGTC 2 cut(s) 68, 770
ScrFI CCNGG 4 cut(s) 80, 228, 552, 665
SduI GDGCHC 2 cut(s) 343, 488
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 2 cut(s) 238, 844
SfuI TTCGAA 1 cut(s) 40
SinI GGWCC 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 9 cut(s) 50, 64, 124, 275, 447, 458, 585, 674, 867
SsiI CCGC 2 cut(s) 33, 300
SspMI CTAG 4 cut(s) 408, 507, 702, 740
StyD4I CCNGG 4 cut(s) 78, 226, 550, 663
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 4 cut(s) 106, 113, 490, 733
TaiI ACGT 2 cut(s) 159, 350
TaqI TCGA 4 cut(s) 40, 62, 273, 471
TasI AATT 9 cut(s) 50, 64, 124, 275, 447, 458, 585, 674, 867
TfiI GAWTC 2 cut(s) 37, 783
Tru1I TTAA 4 cut(s) 14, 141, 390, 573
Tru9I TTAA 4 cut(s) 14, 141, 390, 573
TscAI CASTG 4 cut(s) 109, 493, 738, 802
TseFI GTSAC 3 cut(s) 178, 319, 830
TseI GCWGC 3 cut(s) 560, 596, 632
Tsp45I GTSAC 3 cut(s) 178, 319, 830
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 2 cut(s) 683, 770
TspRI CASTG 4 cut(s) 109, 493, 738, 802
Tth111I GACNNNGTC 2 cut(s) 80, 104
Van91I CCANNNNNTGG 1 cut(s) 895
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 440
XapI RAATTY 3 cut(s) 50, 275, 458
XceI RCATGY 2 cut(s) 91, 534
XmiI GTMKAC 2 cut(s) 84, 723
XspI CTAG 4 cut(s) 408, 507, 702, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.