MD17G1017300.v1.1

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
1377623 .. 1380280
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1017300.v1.1.491

Sequence Viewer

Length: 1014 bp
ATGTCCAAGATCAAGATTGGCATCAATGGATTCGGAAGGATTGGCCGCTTGGTGGCCAGGGTTGCTCTGCAGAGAGACGACATTGAGCTTGTCGCTGTCAACGATCCTTTCATCAACATCGAATACATGAGCTACATGTTTAAGTACGACACGGTTCACGGGCAATGGAAGCACCACGAGCTTAAGGTTAAGGATGATAAGACCCTTCTCTTTGGTGACAAGCCAGTCAAAGTGTTCGCTTCTAGGGACCCCGAACAGATCCCGTGGGGGGAGGCCGGAGCGGAATATGTGGTCGAGTCCACCGGAGTTTTCACCGATAAGGAAAAAGCCTCTCTGCACTTAAAGGGTGGTGCAAAGAAGGTTATCATTTCTGCCCCAAGTAAGGACGCCCCAATGTTTGTTGTGGGTGTCAATGAGAAGGAGTACAAGCCAGATCTTGACATTGTCTCCAATGCCAGTTGCACTACCAACTGTCTTGCCCCATTGGCAAAGGTTATTCATGACAAGTTTGGTATTGTGGAGGGTCTTATGACTACCGTCCATTCTATTACTGCCACTCAAAAGACTGTTGACGGACCGTCGATGAAAGACTGGAGAGGTGGCAGAGCTGCTGCTACCAACATCATTCCCAGCAGTACTGGAGCTGCCAAGGCCGTGGGGAAAGTGCTGCCCGCATTGAACGGGAAGTTGACGGGAATGGCATTCCGTGTTCCCACGGTGGATGTTTCGGTGGTTGATCTCACGGTGAGACTTGAGAAGAAGGCCACTTACGACGAGATCAAAAATGCCATCAAGAAAGAATCAGAGGGCAGCATGAAGGGAATCCTCGGATATACTGACGAAGATGTGGTGTCGACGGACTTTGTGGGCGATAACCGGTCGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAACGACAACTTTGTGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGTTATAGCTCGCGAGTAATTGACTTGATCCGTCACATTGCCTCAGTTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

338

Amino Acids

36.87

Weight (kDa)

8.27

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 107 3.6e-36 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 159 - 316 6e-73 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 854
AccII CGCG 1 cut(s) 973
AciI CCGC 3 cut(s) 46, 281, 672
AclWI GGATC 3 cut(s) 98, 253, 982
AcoI YGGCCR 2 cut(s) 43, 54
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 3 cut(s) 146, 425, 637
AfiI CCNNNNNNNGG 3 cut(s) 52, 268, 382
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 135
AgeI ACCGGT 1 cut(s) 876
AgsI TTSAA 2 cut(s) 679, 916
AhdI GACNNNNNGTC 1 cut(s) 577
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 7 cut(s) 88, 132, 181, 608, 644, 934, 969
AluI AGCT 7 cut(s) 88, 132, 181, 608, 644, 934, 969
Alw26I GTCTC 3 cut(s) 69, 451, 742
AlwI GGATC 3 cut(s) 98, 253, 982
AoxI GGCC 5 cut(s) 43, 54, 273, 651, 762
ApeKI GCWGC 5 cut(s) 608, 611, 644, 667, 810
AsiGI ACCGGT 1 cut(s) 876
AspS9I GGNCC 2 cut(s) 247, 575
AsuHPI GGTGA 3 cut(s) 227, 304, 757
AvaII GGWCC 2 cut(s) 247, 575
BalI TGGCCA 1 cut(s) 56
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
BauI CACGAG 1 cut(s) 176
BbvI GCAGC 5 cut(s) 595, 598, 631, 654, 822
BccI CCATC 1 cut(s) 797
BceAI ACGGC 1 cut(s) 638
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 3 cut(s) 69, 451, 742
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 485
BglII AGATCT 1 cut(s) 433
BisI GCNGC 6 cut(s) 46, 609, 612, 645, 668, 811
BlsI GCNGC 6 cut(s) 47, 610, 613, 646, 669, 812
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 2 cut(s) 247, 575
BmeRI GACNNNNNGTC 1 cut(s) 577
BmgT120I GGNCC 2 cut(s) 247, 575
BmiI GGNNCC 2 cut(s) 248, 249
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 30, 883
BoxI GACNNNNGTC 1 cut(s) 536
BpmI CTGGAG 2 cut(s) 613, 660
BpuEI CTTGAG 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 7 cut(s) 57, 263, 648, 654, 714, 826, 897
BsaWI WCCGGW 2 cut(s) 302, 876
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 268, 382
Bse118I RCCGGY 1 cut(s) 876
Bse1I ACTGG 4 cut(s) 224, 456, 596, 643
Bse3DI GCAATG 2 cut(s) 170, 996
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 7 cut(s) 57, 263, 648, 654, 714, 826, 897
BseGI GGATG 2 cut(s) 199, 727
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 3 cut(s) 52, 268, 382
BseMI GCAATG 2 cut(s) 170, 996
BseNI ACTGG 4 cut(s) 224, 456, 596, 643
BseXI GCAGC 5 cut(s) 595, 598, 631, 654, 822
BseYI CCCAGC 1 cut(s) 629
BsgI GTGCAG 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 973
Bsh1285I CGRYCG 1 cut(s) 881
BshFI GGCC 5 cut(s) 45, 56, 275, 653, 764
BshTI ACCGGT 1 cut(s) 876
BsiEI CGRYCG 1 cut(s) 881
BsiSI CCGG 3 cut(s) 276, 303, 877
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 3 cut(s) 52, 268, 382
BsmAI GTCTC 3 cut(s) 69, 451, 742
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 5 cut(s) 45, 56, 275, 653, 764
Bsp143I GATC 7 cut(s) 9, 103, 258, 433, 736, 777, 987
Bsp68I TCGCGA 1 cut(s) 973
BspACI CCGC 3 cut(s) 46, 281, 672
BspANI GGCC 5 cut(s) 45, 56, 275, 653, 764
BspFNI CGCG 1 cut(s) 973
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 248, 249
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 3 cut(s) 98, 253, 982
BspTI CTTAAG 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 170, 996
BsrFI RCCGGY 1 cut(s) 876
BsrI ACTGG 4 cut(s) 224, 456, 596, 643
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 7 cut(s) 57, 263, 648, 654, 714, 826, 897
BssMI GATC 7 cut(s) 9, 103, 258, 433, 736, 777, 987
BssNI GRCGYC 1 cut(s) 387
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 2 cut(s) 648, 897
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 7 cut(s) 154, 473, 538, 568, 579, 718, 745
BstACI GRCGYC 1 cut(s) 387
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 672, 971
BstDEI CTNAG 1 cut(s) 1003
BstDSI CCRYGG 3 cut(s) 263, 654, 714
BstF5I GGATG 2 cut(s) 199, 727
BstFNI CGCG 1 cut(s) 973
BstKTI GATC 7 cut(s) 12, 106, 261, 436, 739, 780, 990
BstMAI GTCTC 3 cut(s) 69, 451, 742
BstMBI GATC 7 cut(s) 9, 103, 258, 433, 736, 777, 987
BstMCI CGRYCG 1 cut(s) 881
BstMWI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 485, 650, 908
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 68
BstUI CGCG 1 cut(s) 973
BstV1I GCAGC 5 cut(s) 595, 598, 631, 654, 822
BstX2I RGATCY 2 cut(s) 258, 433
BstXI CCANNNNNNTGG 1 cut(s) 655
BstYI RGATCY 2 cut(s) 258, 433
BsuRI GGCC 5 cut(s) 45, 56, 275, 653, 764
BtgI CCRYGG 3 cut(s) 263, 654, 714
BtsCI GGATG 2 cut(s) 199, 727
BtuMI TCGCGA 1 cut(s) 973
Cac8I GCNNGC 2 cut(s) 672, 971
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 2 cut(s) 247, 575
CpoI CGGWCCG 1 cut(s) 575
CseI GACGC 1 cut(s) 395
Csp6I GTAC 3 cut(s) 145, 424, 636
CspAI ACCGGT 1 cut(s) 876
CspI CGGWCCG 1 cut(s) 575
CviAII CATG 4 cut(s) 127, 136, 500, 814
CviQI GTAC 3 cut(s) 145, 424, 636
DdeI CTNAG 1 cut(s) 1003
DpnI GATC 7 cut(s) 11, 105, 260, 435, 738, 779, 989
DpnII GATC 7 cut(s) 9, 103, 258, 433, 736, 777, 987
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 1 cut(s) 577
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 2 cut(s) 43, 54
Eam1105I GACNNNNNGTC 1 cut(s) 577
Eco130I CCWWGG 2 cut(s) 648, 897
Eco47I GGWCC 2 cut(s) 247, 575
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 648, 897
ErhI CCWWGG 2 cut(s) 648, 897
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 130, 139, 503, 817
FaiI YATR 9 cut(s) 128, 137, 288, 501, 530, 815, 834, 948, 966
FaqI GGGAC 1 cut(s) 260
FatI CATG 4 cut(s) 126, 135, 499, 813
FauI CCCGC 1 cut(s) 679
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 6 cut(s) 46, 609, 612, 645, 668, 811
FokI GGATG 2 cut(s) 206, 734
Fsp4HI GCNGC 6 cut(s) 46, 609, 612, 645, 668, 811
FspBI CTAG 1 cut(s) 243
GluI GCNGC 6 cut(s) 46, 609, 612, 645, 668, 811
GsaI CCCAGC 1 cut(s) 633
GsuI CTGGAG 2 cut(s) 613, 660
HaeIII GGCC 5 cut(s) 45, 56, 275, 653, 764
HapII CCGG 3 cut(s) 276, 303, 877
HgaI GACGC 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 4 cut(s) 130, 139, 503, 817
HincII GTYRAC 4 cut(s) 100, 571, 690, 855
HindII GTYRAC 4 cut(s) 100, 571, 690, 855
HindIII AAGCTT 1 cut(s) 932
HinfI GANTC 4 cut(s) 30, 296, 800, 822
HpaII CCGG 3 cut(s) 276, 303, 877
HphI GGTGA 3 cut(s) 227, 304, 757
Hpy166II GTNNAC 6 cut(s) 100, 157, 300, 571, 690, 855
Hpy188I TCNGA 3 cut(s) 35, 805, 830
Hpy188III TCNNGA 5 cut(s) 13, 437, 500, 793, 972
Hpy8I GTNNAC 6 cut(s) 100, 157, 300, 571, 690, 855
Hpy99I CGWCG 3 cut(s) 583, 776, 859
HpyAV CCTTC 6 cut(s) 30, 215, 352, 412, 754, 811
HpyCH4III ACNGT 7 cut(s) 154, 473, 538, 568, 579, 718, 745
HpyCH4V TGCA 4 cut(s) 70, 337, 353, 462
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 485, 650, 908
HpyF3I CTNAG 1 cut(s) 1003
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 4 cut(s) 130, 139, 503, 817
KflI GGGWCCC 1 cut(s) 247
Kzo9I GATC 7 cut(s) 9, 103, 258, 433, 736, 777, 987
LmnI GCTCC 2 cut(s) 278, 641
Lsp1109I GCAGC 5 cut(s) 595, 598, 631, 654, 822
LweI GCATC 2 cut(s) 30, 883
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 215, 992
MalI GATC 7 cut(s) 11, 105, 260, 435, 738, 779, 989
MbiI CCGCTC 1 cut(s) 281
MboI GATC 7 cut(s) 9, 103, 258, 433, 736, 777, 987
MboII GAAGA 2 cut(s) 769, 854
MflI RGATCY 2 cut(s) 258, 433
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 2 cut(s) 906, 978
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 7 cut(s) 265, 340, 514, 590, 799, 836, 1012
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 5 cut(s) 141, 183, 189, 341, 1008
Msp20I TGGCCA 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 3 cut(s) 276, 303, 877
MspR9I CCNGG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 973
MwoI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 485, 650, 908
NdeII GATC 7 cut(s) 9, 103, 258, 433, 736, 777, 987
NlaIII CATG 4 cut(s) 130, 139, 503, 817
NlaIV GGNNCC 2 cut(s) 248, 249
NmuCI GTSAC 2 cut(s) 215, 992
NruI TCGCGA 1 cut(s) 973
NspI RCATGY 1 cut(s) 139
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 30, 800, 822
PflFI GACNNNGTC 1 cut(s) 443
PinAI ACCGGT 1 cut(s) 876
PkrI GCNGC 6 cut(s) 47, 610, 613, 646, 669, 812
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 247
PscI ACATGT 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 629
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 248, 249
PspPI GGNCC 2 cut(s) 247, 575
PspPPI RGGWCCY 1 cut(s) 247
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 2 cut(s) 258, 433
PsyI GACNNNGTC 1 cut(s) 443
RruI TCGCGA 1 cut(s) 973
RsaI GTAC 3 cut(s) 146, 425, 637
RsaNI GTAC 3 cut(s) 145, 424, 636
Rsr2I CGGWCCG 1 cut(s) 575
RsrII CGGWCCG 1 cut(s) 575
SalI GTCGAC 1 cut(s) 853
SaqAI TTAA 5 cut(s) 141, 183, 189, 341, 1008
SatI GCNGC 6 cut(s) 46, 609, 612, 645, 668, 811
Sau3AI GATC 7 cut(s) 9, 103, 258, 433, 736, 777, 987
Sau96I GGNCC 2 cut(s) 247, 575
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 58
SfaNI GCATC 2 cut(s) 30, 883
SfcI CTRYAG 1 cut(s) 68
SinI GGWCC 2 cut(s) 247, 575
SmlI CTYRAG 2 cut(s) 182, 752
SmoI CTYRAG 2 cut(s) 182, 752
Sse9I AATT 2 cut(s) 906, 978
SsiI CCGC 3 cut(s) 46, 281, 672
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 648, 897
TaaI ACNGT 7 cut(s) 154, 473, 538, 568, 579, 718, 745
TaqI TCGA 6 cut(s) 120, 294, 581, 854, 881, 891
TasI AATT 2 cut(s) 906, 978
TatI WGTACW 2 cut(s) 423, 635
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 30, 800, 822
Tru1I TTAA 5 cut(s) 141, 183, 189, 341, 1008
Tru9I TTAA 5 cut(s) 141, 183, 189, 341, 1008
TseFI GTSAC 2 cut(s) 215, 992
TseI GCWGC 5 cut(s) 608, 611, 644, 667, 810
Tsp45I GTSAC 2 cut(s) 215, 992
TspDTI ATGAA 4 cut(s) 100, 488, 599, 830
TspGWI ACGGA 4 cut(s) 588, 695, 872, 980
Tth111I GACNNNGTC 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 247, 575
XceI RCATGY 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 854
XspI CTAG 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.