Rmu_sc0019128.1_g000001

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019128.1
OG0000502
Physical Location & Seq
Forward (+)
1 .. 3092
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019128.1_g000001.1.cds

Sequence Viewer

Length: 912 bp
aaatttgaggagtcgaattatcgtgtggaccaggtctacatgttcaagcacgacactgtccacggtgcatggaagaattgcgatgtgaaacttaagaatgcaaatcacgtttactttggtaacaaggtagtcaccatttttgcaaacagccgagaagacgaaatcccttggtctggccccggagccgaatacatcgtggatgcctctggtactgccaccgaaatcgaatttgctcagggccatttgaagggcggagcaaagaaggttattgtcacttgcccgtgtgacggtgctcctacgtttgttgtgggtgtcaatgagaaggaatacaagccggagcttaatgttgtttccggtgctagttgcaccaccaactgccttgccccccttgcaaaggtaattcatgataaatttggtatcatcgagggtctgatgagtactgttcactcagttactgctagccaaagaggtgttgatggaacatgtcctaatgattggagacctggaaaagctgcaccaactatcaaagattggagaattggaagagctgcttatatcaacatcattcccactactaccggagctgctaaggctgttggtaaagttctacctgacctggatggtaaattgaccggaatgtcattccgtgttcctagtcttgatgtttcggtggtagacctaacagtgagactagaaaagccagctacggaagagtctgagggaaacctgaaaggaatcttgggttacactgaagatgatgtggtctctactgactttgagggtgacaacaggtacactgactttgagcgtgacaacaggtcaagtatttttgatgcaaaggccggaattgctttgaacgataacttccacaagttggttgcatggtacgacaacgagtggggatacaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

303

Amino Acids

33.22

Weight (kDa)

5.45

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 637
AccB7I CCANNNNNTGG 1 cut(s) 874
AccI GTMKAC 2 cut(s) 36, 675
AciI CCGC 1 cut(s) 252
AcsI RAATTY 3 cut(s) 2, 227, 410
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 4 cut(s) 211, 439, 794, 887
AfiI CCNNNNNNNGG 5 cut(s) 173, 247, 287, 394, 874
AflII CTTAAG 1 cut(s) 92
AflIII ACRYGT 2 cut(s) 39, 482
AgsI TTSAA 3 cut(s) 46, 247, 856
AhdI GACNNNNNGTC 1 cut(s) 817
AjnI CCWGG 3 cut(s) 30, 502, 615
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AluBI AGCT 5 cut(s) 340, 512, 548, 584, 704
AluI AGCT 5 cut(s) 340, 512, 548, 584, 704
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 3 cut(s) 493, 682, 769
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 3 cut(s) 175, 238, 840
ApeKI GCWGC 3 cut(s) 512, 548, 584
ApoI RAATTY 3 cut(s) 2, 227, 410
AspS9I GGNCC 3 cut(s) 28, 176, 238
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 124, 794
AsuNHI GCTAGC 1 cut(s) 458
AvaII GGWCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 3 cut(s) 499, 535, 571
BccI CCATC 2 cut(s) 470, 614
BciT130I CCWGG 3 cut(s) 32, 504, 617
BciVI GTATCC 1 cut(s) 896
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 3 cut(s) 493, 682, 769
BfaI CTAG 4 cut(s) 360, 459, 654, 692
BfrI CTTAAG 1 cut(s) 92
BfuI GTATCC 1 cut(s) 896
BisI GCNGC 3 cut(s) 513, 549, 585
BlsI GCNGC 3 cut(s) 514, 550, 586
BmcAI AGTACT 1 cut(s) 439
Bme1390I CCNGG 4 cut(s) 32, 180, 504, 617
Bme18I GGWCC 1 cut(s) 28
BmeRI GACNNNNNGTC 1 cut(s) 817
BmgT120I GGNCC 3 cut(s) 28, 176, 238
BmiI GGNNCC 2 cut(s) 178, 184
BmrFI CCNGG 4 cut(s) 32, 180, 504, 617
BmsI GCATC 2 cut(s) 190, 823
BmtI GCTAGC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 162
Bpu10I CCTNAGC 2 cut(s) 234, 588
BpuMI CCSGG 1 cut(s) 180
BsaI GGTCTC 2 cut(s) 493, 769
BsaJI CCNNGG 3 cut(s) 61, 167, 178
BsaWI WCCGGW 3 cut(s) 353, 578, 632
Bsc4I CCNNNNNNNGG 5 cut(s) 173, 247, 287, 394, 874
BseBI CCWGG 3 cut(s) 32, 504, 617
BseDI CCNNGG 3 cut(s) 61, 167, 178
BseGI GGATG 2 cut(s) 205, 625
BseLI CCNNNNNNNGG 5 cut(s) 173, 247, 287, 394, 874
BseMII CTCAG 3 cut(s) 248, 462, 708
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 499, 535, 571
BsgI GTGCAG 1 cut(s) 498
BshFI GGCC 3 cut(s) 177, 240, 842
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 6 cut(s) 180, 335, 354, 579, 633, 843
BslI CCNNNNNNNGG 5 cut(s) 173, 247, 287, 394, 874
BsmAI GTCTC 3 cut(s) 493, 682, 769
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 3 cut(s) 177, 240, 842
Bso31I GGTCTC 2 cut(s) 493, 769
Bsp1286I GDGCHC 1 cut(s) 295
BspACI CCGC 1 cut(s) 252
BspANI GGCC 3 cut(s) 177, 240, 842
BspCNI CTCAG 3 cut(s) 247, 461, 709
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 178, 184
BspOI GCTAGC 1 cut(s) 462
BspQI GCTCTTC 1 cut(s) 538
BspTI CTTAAG 1 cut(s) 92
BspTNI GGTCTC 2 cut(s) 493, 769
BssECI CCNNGG 3 cut(s) 61, 167, 178
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 3 cut(s) 32, 504, 617
Bst4CI ACNGT 5 cut(s) 58, 65, 290, 442, 685
Bst6I CTCTTC 2 cut(s) 538, 705
BstAFI CTTAAG 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 460, 702
BstDEI CTNAG 4 cut(s) 234, 448, 588, 717
BstDSI CCRYGG 1 cut(s) 61
BstENI CCTNNNNNAGG 1 cut(s) 392
BstF5I GGATG 2 cut(s) 205, 625
BstMAI GTCTC 3 cut(s) 493, 682, 769
BstMWI GCNNNNNNNGC 3 cut(s) 389, 590, 848
BstNI CCWGG 3 cut(s) 32, 504, 617
BstNSI RCATGY 2 cut(s) 43, 486
BstSCI CCNGG 4 cut(s) 30, 178, 502, 615
BstV1I GCAGC 3 cut(s) 499, 535, 571
BstV2I GAAGAC 1 cut(s) 162
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 3 cut(s) 177, 240, 842
BtgI CCRYGG 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 205, 625
BtsIMutI CAGTG 4 cut(s) 54, 690, 747, 795
Cac8I GCNNGC 2 cut(s) 460, 702
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 403
Cfr13I GGNCC 3 cut(s) 28, 176, 238
CsiI ACCWGGT 1 cut(s) 30
Csp6I GTAC 4 cut(s) 210, 438, 793, 886
CviAII CATG 5 cut(s) 40, 69, 404, 483, 882
CviQI GTAC 4 cut(s) 210, 438, 793, 886
DdeI CTNAG 4 cut(s) 234, 448, 588, 717
DrdI GACNNNNNNGTC 1 cut(s) 637
DriI GACNNNNNGTC 1 cut(s) 817
DseDI GACNNNNNNGTC 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 538, 705
Eam1105I GACNNNNNGTC 1 cut(s) 817
EarI CTCTTC 2 cut(s) 538, 705
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 167
Eco31I GGTCTC 2 cut(s) 493, 769
Eco47I GGWCC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 771
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 30, 502, 615
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 5 cut(s) 43, 72, 407, 486, 885
FaiI YATR 6 cut(s) 41, 70, 405, 484, 555, 883
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FatI CATG 5 cut(s) 39, 68, 403, 482, 881
FblI GTMKAC 2 cut(s) 36, 675
Fnu4HI GCNGC 3 cut(s) 513, 549, 585
FokI GGATG 2 cut(s) 212, 632
Fsp4HI GCNGC 3 cut(s) 513, 549, 585
FspBI CTAG 4 cut(s) 360, 459, 654, 692
GluI GCNGC 3 cut(s) 513, 549, 585
HaeIII GGCC 3 cut(s) 177, 240, 842
HapII CCGG 6 cut(s) 180, 335, 354, 579, 633, 843
Hin1II CATG 5 cut(s) 43, 72, 407, 486, 885
HinfI GANTC 3 cut(s) 11, 713, 735
HpaII CCGG 6 cut(s) 180, 335, 354, 579, 633, 843
HphI GGTGA 2 cut(s) 124, 794
Hpy166II GTNNAC 7 cut(s) 28, 37, 61, 112, 445, 676, 795
Hpy188I TCNGA 2 cut(s) 432, 718
Hpy188III TCNNGA 2 cut(s) 404, 659
Hpy8I GTNNAC 7 cut(s) 28, 37, 61, 112, 445, 676, 795
HpyAV CCTTC 3 cut(s) 241, 256, 316
HpyCH4III ACNGT 5 cut(s) 58, 65, 290, 442, 685
HpyCH4IV ACGT 2 cut(s) 108, 299
HpyCH4V TGCA 8 cut(s) 68, 101, 143, 366, 392, 515, 836, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 590, 848
HpyF3I CTNAG 4 cut(s) 234, 448, 588, 717
HpySE526I ACGT 2 cut(s) 108, 299
Hsp92II CATG 5 cut(s) 43, 72, 407, 486, 885
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 5 cut(s) 182, 254, 298, 337, 581
Lsp1109I GCAGC 3 cut(s) 499, 535, 571
LweI GCATC 2 cut(s) 190, 823
MabI ACCWGGT 1 cut(s) 30
MaeI CTAG 4 cut(s) 360, 459, 654, 692
MaeII ACGT 2 cut(s) 108, 299
MaeIII GTNAC 8 cut(s) 119, 130, 271, 284, 451, 743, 782, 809
MboII GAAGA 5 cut(s) 85, 167, 555, 722, 764
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 9 cut(s) 2, 16, 76, 227, 399, 410, 537, 626, 846
MlyI GAGTC 2 cut(s) 20, 722
MnlI CCTC 5 cut(s) 214, 418, 461, 712, 772
MseI TTAA 2 cut(s) 93, 342
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 6 cut(s) 180, 335, 354, 579, 633, 843
MspR9I CCNGG 4 cut(s) 32, 180, 504, 617
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 3 cut(s) 32, 504, 617
MwoI GCNNNNNNNGC 3 cut(s) 389, 590, 848
NciI CCSGG 1 cut(s) 180
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 5 cut(s) 43, 72, 407, 486, 885
NlaIV GGNNCC 2 cut(s) 178, 184
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 5 cut(s) 130, 271, 284, 782, 809
NspI RCATGY 2 cut(s) 43, 486
PagI TCATGA 1 cut(s) 403
PciI ACATGT 2 cut(s) 39, 482
PciSI GCTCTTC 1 cut(s) 538
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 735
PflFI GACNNNGTC 2 cut(s) 32, 56
PflMI CCANNNNNTGG 1 cut(s) 874
PkrI GCNGC 3 cut(s) 514, 550, 586
PleI GAGTC 2 cut(s) 19, 721
PpsI GAGTC 2 cut(s) 19, 721
PscI ACATGT 2 cut(s) 39, 482
Psp6I CCWGG 3 cut(s) 30, 502, 615
PspGI CCWGG 3 cut(s) 30, 502, 615
PspN4I GGNNCC 2 cut(s) 178, 184
PspPI GGNCC 3 cut(s) 28, 176, 238
PstNI CAGNNNCTG 1 cut(s) 455
PsyI GACNNNGTC 2 cut(s) 32, 56
RsaI GTAC 4 cut(s) 211, 439, 794, 887
RsaNI GTAC 4 cut(s) 210, 438, 793, 886
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 2 cut(s) 93, 342
SatI GCNGC 3 cut(s) 513, 549, 585
Sau96I GGNCC 3 cut(s) 28, 176, 238
ScaI AGTACT 1 cut(s) 439
SchI GAGTC 2 cut(s) 20, 722
ScrFI CCNGG 4 cut(s) 32, 180, 504, 617
SduI GDGCHC 1 cut(s) 295
SexAI ACCWGGT 1 cut(s) 30
SfaNI GCATC 2 cut(s) 190, 823
SinI GGWCC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 9 cut(s) 2, 16, 76, 227, 399, 410, 537, 626, 846
SsiI CCGC 1 cut(s) 252
SspMI CTAG 4 cut(s) 360, 459, 654, 692
StyD4I CCNGG 4 cut(s) 30, 178, 502, 615
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 5 cut(s) 58, 65, 290, 442, 685
TaiI ACGT 2 cut(s) 111, 302
TaqI TCGA 3 cut(s) 14, 225, 423
TasI AATT 9 cut(s) 2, 16, 76, 227, 399, 410, 537, 626, 846
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 1 cut(s) 735
Tru1I TTAA 2 cut(s) 93, 342
Tru9I TTAA 2 cut(s) 93, 342
TscAI CASTG 4 cut(s) 61, 690, 754, 802
TseFI GTSAC 5 cut(s) 130, 271, 284, 782, 809
TseI GCWGC 3 cut(s) 512, 548, 584
Tsp45I GTSAC 5 cut(s) 130, 271, 284, 782, 809
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 2 cut(s) 635, 722
TspRI CASTG 4 cut(s) 61, 690, 754, 802
Tth111I GACNNNGTC 2 cut(s) 32, 56
Van91I CCANNNNNTGG 1 cut(s) 874
Vha464I CTTAAG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 3 cut(s) 2, 227, 410
XceI RCATGY 2 cut(s) 43, 486
XmiI GTMKAC 2 cut(s) 36, 675
XspI CTAG 4 cut(s) 360, 459, 654, 692
ZrmI AGTACT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.