FvH4_6g52741

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000502
Physical Location & Seq
Forward (+)
38752808 .. 38755055
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52741.t1

Sequence Viewer

Length: 1026 bp
ATGGCCAAGATCAAGATTGGCATCAATGGATTCGGAAGGATTGGCCGGACGGTGGCCAGAGTTGCTCTGCAGAGAGACGACATTGAACTCGTTGCCATAAACGATCCGTTCTTGACTGCTGATCACATGAGTTACATGTTCAAGTACGACAGTGTTCATGGGCAGTGGAAGCATGGCGAGCTTAAGGTTAAGGATGAAAGCACACTTCTCTTTGGTGATAAGGCCGTAAAGGTTTATGATTCTAGTTGTTTGTTTACCTTACCTAATGAAATCCCATGGGAAGATGGTGGTGCTGAATTTGTCGTCGAGTCCAGCGGTGTTAACTCAGATCAGGAGAGAGCATCACGCCACCTGACGGCTGGTGCAAAGAAAGTAATCATTTCTGCGCCAAGTGACGAGTTTCCCATGTTTGTTGTGGGTGTTAATGAGAAGGACTACACTCCAGATCTTAGCATTGTTTCGAATGCAAGCTGCACTACTCACTGTCTTGCTCCACTGGCAAAGGTTATCCACGATAAATTTGGTATCGTAGAGGGTCTTATGACCACTGTCCATTCAGTTACTGCTACTCAAATGACTGTTGATAGTCCACTAATGAAAGACTGGAGAGGTAGTAGAGCTGCTGGCCGTAACATCATTCCGACTAGTACTGGAGCTGCCGAGGATGTTGGTAAAGTGCTGCCTGCTCTAAATGGGAAGTTGACAGGAATGGCCTTCAGGGTTCCCACTGTTGATGTGTCCGTGGTTGACCTCACAGTAAGACTTGAGAAGAAGGCTGCCTATGATGAGATTAAAAGTGCTATCAAGGAAGAATCTGAGGGTAACCTAAAGGGAATCCTAGGATACATAGACGATGATTTGGTGTCCACTGACTTTGTGAGTAACCACAGGTCGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCGCTTGGTATGACAATGAGTGGGGTTACAGCTCACGAGTTATCGACTTGATCTGTCACATGGCCACAGTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

342

Amino Acids

37.2

Weight (kDa)

5.41

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 109 1.8e-28 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 163 - 320 7.6e-69 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 5 cut(s) 3, 43, 54, 625, 1011
AcsI RAATTY 2 cut(s) 296, 518
AcuI CTGAAG 1 cut(s) 700
AfaI GTAC 2 cut(s) 146, 649
AfiI CCNNNNNNNGG 2 cut(s) 52, 355
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 3 cut(s) 86, 142, 928
AhlI ACTAGT 1 cut(s) 644
AluBI AGCT 6 cut(s) 181, 471, 620, 656, 946, 981
AluI AGCT 6 cut(s) 181, 471, 620, 656, 946, 981
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 7 cut(s) 3, 43, 54, 222, 625, 711, 1011
ApeKI GCWGC 5 cut(s) 471, 620, 656, 679, 776
ApoI RAATTY 2 cut(s) 296, 518
AspA2I CCTAGG 1 cut(s) 838
AspLEI GCGC 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 227
AsuII TTCGAA 1 cut(s) 461
AvrII CCTAGG 1 cut(s) 838
BalI TGGCCA 3 cut(s) 5, 56, 1013
BauI CACGAG 1 cut(s) 984
BbvI GCAGC 5 cut(s) 458, 607, 643, 666, 763
BccI CCATC 1 cut(s) 278
BceAI ACGGC 3 cut(s) 209, 372, 612
BciVI GTATCC 1 cut(s) 836
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 69
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 3 cut(s) 243, 645, 839
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 182
BfuI GTATCC 1 cut(s) 836
BglII AGATCT 1 cut(s) 445
BisI GCNGC 5 cut(s) 472, 621, 657, 680, 777
BlnI CCTAGG 1 cut(s) 838
BlsI GCNGC 5 cut(s) 473, 622, 658, 681, 778
BmcAI AGTACT 1 cut(s) 649
BmiI GGNNCC 1 cut(s) 723
BmsI GCATC 3 cut(s) 30, 350, 895
BoxI GACNNNNGTC 1 cut(s) 548
BpmI CTGGAG 3 cut(s) 426, 625, 672
Bpu14I TTCGAA 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 5 cut(s) 275, 660, 741, 838, 909
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 355
Bse1I ACTGG 3 cut(s) 501, 608, 655
Bse8I GATNNNNATC 1 cut(s) 20
BseDI CCNNGG 5 cut(s) 275, 660, 741, 838, 909
BseGI GGATG 2 cut(s) 199, 670
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 52, 355
BseMII CTCAG 2 cut(s) 339, 807
BseNI ACTGG 3 cut(s) 501, 608, 655
BseXI GCAGC 5 cut(s) 458, 607, 643, 666, 763
BsgI GTGCAG 1 cut(s) 457
BshFI GGCC 7 cut(s) 5, 45, 56, 224, 627, 713, 1013
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 52, 355
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 7 cut(s) 5, 45, 56, 224, 627, 713, 1013
Bsp119I TTCGAA 1 cut(s) 461
Bsp143I GATC 6 cut(s) 9, 103, 121, 328, 445, 999
Bsp19I CCATGG 1 cut(s) 275
BspACI CCGC 1 cut(s) 315
BspANI GGCC 7 cut(s) 5, 45, 56, 224, 627, 713, 1013
BspCNI CTCAG 2 cut(s) 338, 808
BspLI GGNNCC 1 cut(s) 723
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 461
BspTI CTTAAG 1 cut(s) 182
BsrI ACTGG 3 cut(s) 501, 608, 655
BssECI CCNNGG 5 cut(s) 275, 660, 741, 838, 909
BssMI GATC 6 cut(s) 9, 103, 121, 328, 445, 999
BssSI CACGAG 1 cut(s) 984
BssT1I CCWWGG 3 cut(s) 275, 838, 909
Bst2BI CACGAG 1 cut(s) 984
Bst4CI ACNGT 8 cut(s) 52, 152, 485, 550, 580, 730, 757, 1018
BstAFI CTTAAG 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 461
BstC8I GCNNGC 4 cut(s) 179, 469, 625, 684
BstDEI CTNAG 3 cut(s) 325, 449, 816
BstDSI CCRYGG 2 cut(s) 275, 741
BstEII GGTNACC 1 cut(s) 821
BstF5I GGATG 2 cut(s) 199, 670
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 6 cut(s) 12, 106, 124, 331, 448, 1002
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 6 cut(s) 9, 103, 121, 328, 445, 999
BstMWI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 497, 920, 1019
BstNSI RCATGY 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 548
BstPI GGTNACC 1 cut(s) 821
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 5 cut(s) 458, 607, 643, 666, 763
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 7 cut(s) 5, 45, 56, 224, 627, 713, 1013
BtgI CCRYGG 2 cut(s) 275, 741
BtsCI GGATG 2 cut(s) 199, 670
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 7 cut(s) 157, 170, 481, 494, 546, 726, 867
Cac8I GCNNGC 4 cut(s) 179, 469, 625, 684
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 145, 648
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 7 cut(s) 127, 136, 158, 173, 276, 406, 1009
CviQI GTAC 2 cut(s) 145, 648
DdeI CTNAG 3 cut(s) 325, 449, 816
DpnI GATC 6 cut(s) 11, 105, 123, 330, 447, 1001
DpnII GATC 6 cut(s) 9, 103, 121, 328, 445, 999
EaeI YGGCCR 5 cut(s) 3, 43, 54, 625, 1011
Eco130I CCWWGG 3 cut(s) 275, 838, 909
Eco57I CTGAAG 1 cut(s) 700
Eco91I GGTNACC 1 cut(s) 821
EcoO65I GGTNACC 1 cut(s) 821
EcoT14I CCWWGG 3 cut(s) 275, 838, 909
ErhI CCWWGG 3 cut(s) 275, 838, 909
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 7 cut(s) 130, 139, 161, 176, 279, 409, 1012
FatI CATG 7 cut(s) 126, 135, 157, 172, 275, 405, 1008
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 472, 621, 657, 680, 777
FokI GGATG 2 cut(s) 206, 677
Fsp4HI GCNGC 5 cut(s) 472, 621, 657, 680, 777
FspBI CTAG 3 cut(s) 243, 645, 839
GlaI GCGC 1 cut(s) 387
GluI GCNGC 5 cut(s) 472, 621, 657, 680, 777
GsuI CTGGAG 3 cut(s) 426, 625, 672
HaeIII GGCC 7 cut(s) 5, 45, 56, 224, 627, 713, 1013
HapII CCGG 1 cut(s) 46
HhaI GCGC 1 cut(s) 388
Hin1II CATG 7 cut(s) 130, 139, 161, 176, 279, 409, 1012
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HincII GTYRAC 3 cut(s) 322, 702, 748
HindII GTYRAC 3 cut(s) 322, 702, 748
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 5 cut(s) 30, 239, 308, 812, 834
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 6 cut(s) 255, 322, 590, 702, 748, 867
Hpy188I TCNGA 4 cut(s) 35, 328, 642, 817
Hpy188III TCNNGA 5 cut(s) 13, 112, 332, 443, 984
Hpy8I GTNNAC 6 cut(s) 255, 322, 590, 702, 748, 867
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 30, 424, 724, 766
HpyCH4III ACNGT 8 cut(s) 52, 152, 485, 550, 580, 730, 757, 1018
HpyCH4V TGCA 5 cut(s) 70, 365, 467, 474, 1022
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 497, 920, 1019
HpyF3I CTNAG 3 cut(s) 325, 449, 816
Hsp92II CATG 7 cut(s) 130, 139, 161, 176, 279, 409, 1012
HspAI GCGC 1 cut(s) 386
Ksp22I TGATCA 1 cut(s) 121
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 6 cut(s) 9, 103, 121, 328, 445, 999
LmnI GCTCC 2 cut(s) 496, 653
Lsp1109I GCAGC 5 cut(s) 458, 607, 643, 666, 763
LweI GCATC 3 cut(s) 30, 350, 895
MaeI CTAG 3 cut(s) 243, 645, 839
MaeIII GTNAC 8 cut(s) 131, 392, 559, 629, 821, 881, 974, 1004
MalI GATC 6 cut(s) 11, 105, 123, 330, 447, 1001
MboI GATC 6 cut(s) 9, 103, 121, 328, 445, 999
MboII GAAGA 3 cut(s) 293, 781, 821
MflI RGATCY 1 cut(s) 445
MlsI TGGCCA 3 cut(s) 5, 56, 1013
MluCI AATT 3 cut(s) 296, 518, 918
MluNI TGGCCA 3 cut(s) 5, 56, 1013
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 665
MnlI CCTC 5 cut(s) 526, 602, 655, 761, 811
Mox20I TGGCCA 3 cut(s) 5, 56, 1013
MscI TGGCCA 3 cut(s) 5, 56, 1013
MseI TTAA 5 cut(s) 183, 189, 321, 423, 792
Msp20I TGGCCA 3 cut(s) 5, 56, 1013
MspA1I CMGCKG 1 cut(s) 315
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 1 cut(s) 46
Mva1269I GAATGC 1 cut(s) 469
MwoI GCNNNNNNNGC 6 cut(s) 62, 169, 178, 497, 920, 1019
NcoI CCATGG 1 cut(s) 275
NdeII GATC 6 cut(s) 9, 103, 121, 328, 445, 999
NlaIII CATG 7 cut(s) 130, 139, 161, 176, 279, 409, 1012
NlaIV GGNNCC 1 cut(s) 723
NmeAIII GCCGAG 1 cut(s) 685
NmuCI GTSAC 2 cut(s) 392, 1004
NspI RCATGY 1 cut(s) 139
NspV TTCGAA 1 cut(s) 461
PciI ACATGT 1 cut(s) 135
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 4 cut(s) 30, 239, 812, 834
PkrI GCNGC 5 cut(s) 473, 622, 658, 681, 778
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PscI ACATGT 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 548
PspEI GGTNACC 1 cut(s) 821
PspN4I GGNNCC 1 cut(s) 723
PstI CTGCAG 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 2 cut(s) 146, 649
RsaNI GTAC 2 cut(s) 145, 648
SaqAI TTAA 5 cut(s) 183, 189, 321, 423, 792
SatI GCNGC 5 cut(s) 472, 621, 657, 680, 777
Sau3AI GATC 6 cut(s) 9, 103, 121, 328, 445, 999
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 1 cut(s) 317
SfaNI GCATC 3 cut(s) 30, 350, 895
SfcI CTRYAG 1 cut(s) 68
SfuI TTCGAA 1 cut(s) 461
SmlI CTYRAG 2 cut(s) 182, 764
SmoI CTYRAG 2 cut(s) 182, 764
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 3 cut(s) 296, 518, 918
SsiI CCGC 1 cut(s) 315
SspMI CTAG 3 cut(s) 243, 645, 839
StyI CCWWGG 3 cut(s) 275, 838, 909
TaaI ACNGT 8 cut(s) 52, 152, 485, 550, 580, 730, 757, 1018
TaqI TCGA 5 cut(s) 306, 461, 893, 903, 993
TasI AATT 3 cut(s) 296, 518, 918
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 4 cut(s) 30, 239, 812, 834
Tru1I TTAA 5 cut(s) 183, 189, 321, 423, 792
Tru9I TTAA 5 cut(s) 183, 189, 321, 423, 792
TscAI CASTG 7 cut(s) 157, 170, 488, 501, 553, 733, 874
TseFI GTSAC 2 cut(s) 392, 1004
TseI GCWGC 5 cut(s) 471, 620, 656, 679, 776
Tsp45I GTSAC 2 cut(s) 392, 1004
TspDTI ATGAA 4 cut(s) 146, 210, 282, 611
TspGWI ACGGA 2 cut(s) 96, 730
TspRI CASTG 7 cut(s) 157, 170, 488, 501, 553, 733, 874
Vha464I CTTAAG 1 cut(s) 182
XapI RAATTY 2 cut(s) 296, 518
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 3 cut(s) 356, 412, 518
XmaJI CCTAGG 1 cut(s) 838
XspI CTAG 3 cut(s) 243, 645, 839
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.