RLG00000022261

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000502
Physical Location & Seq
Forward (+)
82050308 .. 82052562
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022261

Sequence Viewer

Length: 789 bp
ATGGCCAAGATCAAGATTGGCATCAATGGATTCGGAAGGATTGGCCGGTTGGTGGCCAGAGTTGCTGTGCAGAGAGATGACATCGAACTCGTTGCCATTAACGATCCTTTCTTGACTGCAGATCACATGAGATACATGTTTAAGTACGACAGTGTTCATGGGCAGTGGAAGCATGGCGAGCTTAAGGTTAAGGATGAAAGCACACTTCTCTTTGGTGATAAGCCCGTTAAAGTTTTTGATTCTAGTTCTTTACTTACTTTACCTGATGAAATCCCATGGGGCGATTCTGGTGCTGAATTTGTCGTTGAGTCCTCCGGAGTTTACACAGATCGGGAGAGAGCATCTCACCACCTGAGGGTTATCCACGATAAATTTGGTATCATAGAGGGTCTTATGACCACTGTCCATTCTATTACTGCTACTCAAAAGACTGTTGATAGTCCACTAATGAAAGACTGGAGAGGTGGTAGAGCTGCTGGCCATAACATCATTCCCACTAGTACTGGAGCTGCTGAGGGTGTTGGTAAAGTGCTGCCGGCACTAAATGGGAAGTTGACAGGAATGGCCTTCAGGGTTCCCACTGTTGACGTTTCCGTGGTTGACCTCACAGTGAGACTTGAGAAGAAGGCTACTTATGATGAGATTAAAAATGCTATCAAGGAAGAATCTGAGGGTAACCTAAAGGGAATCCTCGGATATATGGACGATGATTTAGTGTCCACTGACTTTGTGGATAACCACAGCTCACGAGTCATCGACTTGATCTGTCACATGGCCACAGTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

263

Amino Acids

28.8

Weight (kDa)

5.92

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 110 1.9e-30 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 118 - 253 8.4e-58 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 314
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 5 cut(s) 3, 43, 54, 478, 774
AcsI RAATTY 2 cut(s) 296, 371
AcuI CTGAAG 1 cut(s) 553
AfaI GTAC 2 cut(s) 146, 502
AfiI CCNNNNNNNGG 2 cut(s) 52, 355
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 135
AhlI ACTAGT 1 cut(s) 497
AluBI AGCT 4 cut(s) 181, 473, 509, 744
AluI AGCT 4 cut(s) 181, 473, 509, 744
Alw26I GTCTC 1 cut(s) 607
AlwI GGATC 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 6 cut(s) 3, 43, 54, 478, 564, 774
ApeKI GCWGC 3 cut(s) 473, 509, 532
ApoI RAATTY 2 cut(s) 296, 371
AsuHPI GGTGA 2 cut(s) 227, 338
AxyI CCTNAGG 1 cut(s) 353
BalI TGGCCA 4 cut(s) 5, 56, 480, 776
BauI CACGAG 1 cut(s) 747
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 460, 496, 519
BcgI CGANNNNNNTGC 4 cut(s) 74, 108, 272, 306
BcoDI GTCTC 1 cut(s) 607
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 2 cut(s) 243, 498
BfmI CTRYAG 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 182
BisI GCNGC 3 cut(s) 474, 510, 533
BlsI GCNGC 3 cut(s) 475, 511, 534
BmcAI AGTACT 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 576
BmsI GCATC 2 cut(s) 30, 350
BoxI GACNNNNGTC 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpmI CTGGAG 2 cut(s) 478, 525
Bpu10I CCTNAGC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 275, 594, 691
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 355
Bse118I RCCGGY 2 cut(s) 45, 535
Bse1I ACTGG 2 cut(s) 461, 508
Bse21I CCTNAGG 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 314
BseDI CCNNGG 3 cut(s) 275, 594, 691
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 52, 355
BseMII CTCAG 3 cut(s) 344, 504, 660
BseNI ACTGG 2 cut(s) 461, 508
BseXI GCAGC 3 cut(s) 460, 496, 519
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 6 cut(s) 5, 45, 56, 480, 566, 776
BsiSI CCGG 3 cut(s) 46, 315, 536
BslI CCNNNNNNNGG 2 cut(s) 52, 355
BsmAI GTCTC 1 cut(s) 607
BsnI GGCC 6 cut(s) 5, 45, 56, 480, 566, 776
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 5 cut(s) 9, 103, 121, 328, 762
Bsp19I CCATGG 1 cut(s) 275
BspANI GGCC 6 cut(s) 5, 45, 56, 480, 566, 776
BspCNI CTCAG 3 cut(s) 345, 505, 661
BspEI TCCGGA 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 576
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 45, 535
BsrI ACTGG 2 cut(s) 461, 508
BssAI RCCGGY 2 cut(s) 45, 535
BssECI CCNNGG 3 cut(s) 275, 594, 691
BssMI GATC 5 cut(s) 9, 103, 121, 328, 762
BssSI CACGAG 1 cut(s) 747
BssT1I CCWWGG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 747
Bst4CI ACNGT 6 cut(s) 152, 403, 433, 583, 610, 781
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 179, 478, 537
BstDEI CTNAG 3 cut(s) 353, 513, 669
BstDSI CCRYGG 2 cut(s) 275, 594
BstEII GGTNACC 1 cut(s) 674
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 5 cut(s) 12, 106, 124, 331, 765
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 5 cut(s) 9, 103, 121, 328, 762
BstMWI GCNNNNNNNGC 3 cut(s) 62, 169, 178
BstNSI RCATGY 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 401
BstPI GGTNACC 1 cut(s) 674
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 460, 496, 519
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 6 cut(s) 5, 45, 56, 480, 566, 776
BtgI CCRYGG 2 cut(s) 275, 594
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 6 cut(s) 157, 170, 399, 579, 615, 720
Cac8I GCNNGC 3 cut(s) 179, 478, 537
Cfr10I RCCGGY 2 cut(s) 45, 535
Csp6I GTAC 2 cut(s) 145, 501
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviAII CATG 7 cut(s) 127, 136, 158, 173, 276, 772, 786
CviQI GTAC 2 cut(s) 145, 501
DdeI CTNAG 3 cut(s) 353, 513, 669
DpnI GATC 5 cut(s) 11, 105, 123, 330, 764
DpnII GATC 5 cut(s) 9, 103, 121, 328, 762
EaeI YGGCCR 5 cut(s) 3, 43, 54, 478, 774
Eco130I CCWWGG 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 553
Eco81I CCTNAGG 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 674
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 7 cut(s) 130, 139, 161, 176, 279, 775, 789
FatI CATG 7 cut(s) 126, 135, 157, 172, 275, 771, 785
Fnu4HI GCNGC 3 cut(s) 474, 510, 533
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 474, 510, 533
FspBI CTAG 2 cut(s) 243, 498
GluI GCNGC 3 cut(s) 474, 510, 533
GsuI CTGGAG 2 cut(s) 478, 525
HaeIII GGCC 6 cut(s) 5, 45, 56, 480, 566, 776
HapII CCGG 3 cut(s) 46, 315, 536
Hin1II CATG 7 cut(s) 130, 139, 161, 176, 279, 775, 789
HincII GTYRAC 3 cut(s) 555, 586, 601
HindII GTYRAC 3 cut(s) 555, 586, 601
HinfI GANTC 7 cut(s) 30, 239, 284, 308, 665, 687, 750
HpaII CCGG 3 cut(s) 46, 315, 536
HphI GGTGA 2 cut(s) 227, 338
Hpy166II GTNNAC 6 cut(s) 322, 443, 555, 586, 601, 720
Hpy188I TCNGA 3 cut(s) 35, 670, 695
Hpy188III TCNNGA 5 cut(s) 13, 112, 315, 332, 747
Hpy8I GTNNAC 6 cut(s) 322, 443, 555, 586, 601, 720
HpyAV CCTTC 3 cut(s) 30, 577, 619
HpyCH4III ACNGT 6 cut(s) 152, 403, 433, 583, 610, 781
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 2 cut(s) 70, 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 169, 178
HpyF3I CTNAG 3 cut(s) 353, 513, 669
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 7 cut(s) 130, 139, 161, 176, 279, 775, 789
Kpn2I TCCGGA 1 cut(s) 314
KroI GCCGGC 1 cut(s) 535
KroNI GCCGGC 1 cut(s) 537
Kzo9I GATC 5 cut(s) 9, 103, 121, 328, 762
LmnI GCTCC 1 cut(s) 506
Lsp1109I GCAGC 3 cut(s) 460, 496, 519
LweI GCATC 2 cut(s) 30, 350
MaeI CTAG 2 cut(s) 243, 498
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 3 cut(s) 674, 767, 781
MalI GATC 5 cut(s) 11, 105, 123, 330, 764
MboI GATC 5 cut(s) 9, 103, 121, 328, 762
MboII GAAGA 2 cut(s) 634, 674
MlsI TGGCCA 4 cut(s) 5, 56, 480, 776
MluCI AATT 2 cut(s) 296, 371
MluNI TGGCCA 4 cut(s) 5, 56, 480, 776
MlyI GAGTC 2 cut(s) 317, 759
MnlI CCTC 8 cut(s) 322, 348, 379, 455, 508, 614, 664, 701
Mox20I TGGCCA 4 cut(s) 5, 56, 480, 776
MroI TCCGGA 1 cut(s) 314
MroNI GCCGGC 1 cut(s) 535
MscI TGGCCA 4 cut(s) 5, 56, 480, 776
MseI TTAA 6 cut(s) 99, 141, 183, 189, 228, 645
Msp20I TGGCCA 4 cut(s) 5, 56, 480, 776
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 3 cut(s) 46, 315, 536
MwoI GCNNNNNNNGC 3 cut(s) 62, 169, 178
NaeI GCCGGC 1 cut(s) 537
NcoI CCATGG 1 cut(s) 275
NdeII GATC 5 cut(s) 9, 103, 121, 328, 762
NgoMIV GCCGGC 1 cut(s) 535
NlaIII CATG 7 cut(s) 130, 139, 161, 176, 279, 775, 789
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 767
NspI RCATGY 1 cut(s) 139
PciI ACATGT 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 537
PfeI GAWTC 5 cut(s) 30, 239, 284, 665, 687
PkrI GCNGC 3 cut(s) 475, 511, 534
PleI GAGTC 2 cut(s) 316, 758
PpsI GAGTC 2 cut(s) 316, 758
PscI ACATGT 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 401
PspEI GGTNACC 1 cut(s) 674
PspN4I GGNNCC 1 cut(s) 576
PstI CTGCAG 1 cut(s) 121
RsaI GTAC 2 cut(s) 146, 502
RsaNI GTAC 2 cut(s) 145, 501
SaqAI TTAA 6 cut(s) 99, 141, 183, 189, 228, 645
SatI GCNGC 3 cut(s) 474, 510, 533
Sau3AI GATC 5 cut(s) 9, 103, 121, 328, 762
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 2 cut(s) 317, 759
SfaNI GCATC 2 cut(s) 30, 350
SfcI CTRYAG 1 cut(s) 117
SmlI CTYRAG 2 cut(s) 182, 617
SmoI CTYRAG 2 cut(s) 182, 617
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 2 cut(s) 296, 371
SspMI CTAG 2 cut(s) 243, 498
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 6 cut(s) 152, 403, 433, 583, 610, 781
TaiI ACGT 1 cut(s) 591
TaqI TCGA 2 cut(s) 84, 756
TasI AATT 2 cut(s) 296, 371
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 5 cut(s) 30, 239, 284, 665, 687
Tru1I TTAA 6 cut(s) 99, 141, 183, 189, 228, 645
Tru9I TTAA 6 cut(s) 99, 141, 183, 189, 228, 645
TscAI CASTG 6 cut(s) 157, 170, 406, 586, 615, 727
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 3 cut(s) 473, 509, 532
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 4 cut(s) 146, 210, 282, 464
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 6 cut(s) 157, 170, 406, 586, 615, 727
Vha464I CTTAAG 1 cut(s) 182
XapI RAATTY 2 cut(s) 296, 371
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 2 cut(s) 371, 727
XspI CTAG 2 cut(s) 243, 498
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.