RLG00000004459

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000502
Physical Location & Seq
Reverse (-)
59563202 .. 59566683
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004459

Sequence Viewer

Length: 897 bp
ATGGTTAGAGGCGAACTACAGACGCAGAATTGTGACCCAGTCTTCTTACTATGCTTCGGCTCAGACTTGCACTCTAGCCCGAGCTTGCATCTGGGCTTGAGCACGGGATTTGGAAGAATCGGAAGATTGGTCACAAGAGTGGCTTTGCAAAGAGACGATATTGATCTCGTTTGCATTAATGACCCCTACATCACGGCCGACTACATTGTCTACATGTTCAAGCACGACACTGTTCACGGTGCATGGAAGAATTGCGATGTGAAACTTAAGAATGCAAACCACGTTTACTTTGGTAACAAGGAAGTCACCATTTTTGCAATCAGTCGAGAAGACGAAATCCCTTGGTCCGGCCCCGGAGCCGAATACATCGTGGATGCCTCTGGTACTGCCACCGAAATCGAATTTGCTCAGGGCCATTTGAAGGTCATTCATGATAAATTTGGTATCATCGAGGGTCTGATGAGCACTGTTCACTCAGTTACTGCTAGCCAAAGAGGTGTTGATGGAACATGTCCTAATGATTGGAGACCTGGAAAAGCTGCACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATTATTCCCACTACTACTGGAGCTGCTAAGGCTGTTGGTAAAGTTCTACCTGACCTGGATGGTAAATTGACCGGAATGTCATTCCGTGTTCCTAGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGGCTAGAAAAGCCAGCTACGTATGAGGAAATAAAAGTTGCCATCAAGGAAGAGTCTGAGGGAAACCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGAGCGTGACAGCAGCACTCGCATCGTTGACTTGATGGCCTACATTGCGTCATTTGATTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

299

Amino Acids

32.66

Weight (kDa)

5.19

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 36 - 131 1.2e-22 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 140 - 181 1.9e-10 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 183 - 290 7.9e-41 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 206, 664
AccI GTMKAC 2 cut(s) 210, 702
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 2 cut(s) 401, 437
AcuI CTGAAG 2 cut(s) 803, 825
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 2 cut(s) 347, 421
AflII CTTAAG 1 cut(s) 266
AflIII ACRYGT 2 cut(s) 213, 509
AgsI TTSAA 2 cut(s) 220, 421
AjnI CCWGG 2 cut(s) 529, 642
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 5 cut(s) 84, 539, 575, 611, 731
AluI AGCT 5 cut(s) 84, 539, 575, 611, 731
Alw21I GWGCWC 2 cut(s) 104, 467
Alw26I GTCTC 3 cut(s) 147, 520, 823
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 79
AoxI GGCC 4 cut(s) 195, 349, 412, 867
ApeKI GCWGC 4 cut(s) 539, 575, 611, 843
ApoI RAATTY 2 cut(s) 401, 437
AseI ATTAAT 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 345, 350, 412
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 298
AsuNHI GCTAGC 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 345
BbsI GAAGAC 2 cut(s) 34, 336
Bbv12I GWGCWC 2 cut(s) 104, 467
BbvI GCAGC 4 cut(s) 526, 562, 598, 855
BccI CCATC 4 cut(s) 497, 641, 764, 859
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 2 cut(s) 835, 869
BciT130I CCWGG 2 cut(s) 531, 644
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 3 cut(s) 147, 520, 823
BfaI CTAG 4 cut(s) 75, 486, 681, 719
BfmI CTRYAG 1 cut(s) 17
BfrI CTTAAG 1 cut(s) 266
BisI GCNGC 4 cut(s) 540, 576, 612, 844
BlsI GCNGC 4 cut(s) 541, 577, 613, 845
Bme1390I CCNGG 3 cut(s) 354, 531, 644
Bme18I GGWCC 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 345, 350, 412
BmiI GGNNCC 2 cut(s) 352, 358
BmrFI CCNGG 3 cut(s) 354, 531, 644
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 3 cut(s) 97, 364, 861
BmtI GCTAGC 1 cut(s) 489
BmuI ACTGGG 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 34, 336
BpmI CTGGAG 1 cut(s) 627
Bpu10I CCTNAGC 2 cut(s) 408, 615
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 735
BsaBI GATNNNNATC 1 cut(s) 162
BsaI GGTCTC 2 cut(s) 520, 823
BsaJI CCNNGG 2 cut(s) 341, 352
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 421
Bse1I ACTGG 2 cut(s) 38, 610
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 2 cut(s) 531, 644
BseDI CCNNGG 2 cut(s) 341, 352
BseGI GGATG 2 cut(s) 379, 652
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 347, 421
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 4 cut(s) 75, 422, 489, 762
BseNI ACTGG 2 cut(s) 38, 610
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 4 cut(s) 526, 562, 598, 855
BsgI GTGCAG 1 cut(s) 525
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 4 cut(s) 197, 351, 414, 869
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 104, 467
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 3 cut(s) 348, 354, 660
BslI CCNNNNNNNGG 2 cut(s) 347, 421
BsmAI GTCTC 3 cut(s) 147, 520, 823
BsmBI CGTCTC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 4 cut(s) 197, 351, 414, 869
Bso31I GGTCTC 2 cut(s) 520, 823
BsoBI CYCGRG 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 104, 467
Bsp143I GATC 1 cut(s) 163
BspANI GGCC 4 cut(s) 197, 351, 414, 869
BspCNI CTCAG 4 cut(s) 74, 421, 488, 763
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 352, 358
BspOI GCTAGC 1 cut(s) 489
BspQI GCTCTTC 1 cut(s) 565
BspTI CTTAAG 1 cut(s) 266
BspTNI GGTCTC 2 cut(s) 520, 823
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 2 cut(s) 38, 610
BssECI CCNNGG 2 cut(s) 341, 352
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 531, 644
Bst4CI ACNGT 4 cut(s) 232, 239, 469, 712
Bst6I CTCTTC 2 cut(s) 565, 759
BstAFI CTTAAG 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 735
BstC8I GCNNGC 3 cut(s) 86, 487, 729
BstDEI CTNAG 5 cut(s) 61, 408, 475, 615, 771
BstF5I GGATG 2 cut(s) 379, 652
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 3 cut(s) 147, 520, 823
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 4 cut(s) 617, 724, 849, 875
BstNI CCWGG 2 cut(s) 531, 644
BstNSI RCATGY 2 cut(s) 217, 513
BstSCI CCNGG 3 cut(s) 352, 529, 642
BstSFI CTRYAG 1 cut(s) 17
BstSNI TACGTA 1 cut(s) 735
BstV1I GCAGC 4 cut(s) 526, 562, 598, 855
BstV2I GAAGAC 2 cut(s) 34, 336
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 4 cut(s) 197, 351, 414, 869
BtgZI GCGATG 1 cut(s) 270
BtsCI GGATG 2 cut(s) 379, 652
BtsIMutI CAGTG 4 cut(s) 228, 465, 717, 801
Cac8I GCNNGC 3 cut(s) 86, 487, 729
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 1 cut(s) 430
Cfr13I GGNCC 3 cut(s) 345, 350, 412
CseI GACGC 2 cut(s) 31, 867
Csp6I GTAC 1 cut(s) 384
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 4 cut(s) 214, 243, 431, 510
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 5 cut(s) 61, 408, 475, 615, 771
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DrdI GACNNNNNNGTC 2 cut(s) 206, 664
DseDI GACNNNNNNGTC 2 cut(s) 206, 664
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 565, 759
EarI CTCTTC 2 cut(s) 565, 759
EclXI CGGCCG 1 cut(s) 195
Eco105I TACGTA 1 cut(s) 735
Eco130I CCWWGG 1 cut(s) 341
Eco31I GGTCTC 2 cut(s) 520, 823
Eco47I GGWCC 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 803, 825
Eco88I CYCGRG 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 529, 642
EcoT14I CCWWGG 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 341
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 4 cut(s) 217, 246, 434, 513
FaiI YATR 8 cut(s) 52, 215, 244, 432, 511, 582, 738, 895
FalI AAGNNNNNCTT 6 cut(s) 127, 159, 562, 594, 776, 808
FatI CATG 4 cut(s) 213, 242, 430, 509
FblI GTMKAC 2 cut(s) 210, 702
Fnu4HI GCNGC 4 cut(s) 540, 576, 612, 844
FokI GGATG 2 cut(s) 386, 659
Fsp4HI GCNGC 4 cut(s) 540, 576, 612, 844
FspBI CTAG 4 cut(s) 75, 486, 681, 719
GluI GCNGC 4 cut(s) 540, 576, 612, 844
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 4 cut(s) 197, 351, 414, 869
HapII CCGG 3 cut(s) 348, 354, 660
HgaI GACGC 2 cut(s) 31, 867
Hin1II CATG 4 cut(s) 217, 246, 434, 513
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 4 cut(s) 117, 767, 789, 887
HpaII CCGG 3 cut(s) 348, 354, 660
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 6 cut(s) 211, 235, 286, 472, 703, 859
Hpy188I TCNGA 4 cut(s) 64, 122, 459, 772
Hpy188III TCNNGA 3 cut(s) 326, 431, 686
Hpy8I GTNNAC 6 cut(s) 211, 235, 286, 472, 703, 859
HpyAV CCTTC 2 cut(s) 415, 778
HpyCH4III ACNGT 4 cut(s) 232, 239, 469, 712
HpyCH4IV ACGT 2 cut(s) 282, 734
HpyCH4V TGCA 8 cut(s) 70, 88, 148, 174, 242, 275, 317, 542
HpyF10VI GCNNNNNNNGC 4 cut(s) 617, 724, 849, 875
HpyF3I CTNAG 5 cut(s) 61, 408, 475, 615, 771
HpySE526I ACGT 2 cut(s) 282, 734
Hsp92II CATG 4 cut(s) 217, 246, 434, 513
Kzo9I GATC 1 cut(s) 163
LguI GCTCTTC 1 cut(s) 565
LmnI GCTCC 2 cut(s) 356, 608
Lsp1109I GCAGC 4 cut(s) 526, 562, 598, 855
LweI GCATC 3 cut(s) 97, 364, 861
MaeI CTAG 4 cut(s) 75, 486, 681, 719
MaeII ACGT 2 cut(s) 282, 734
MaeIII GTNAC 7 cut(s) 32, 130, 293, 304, 478, 797, 836
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 8 cut(s) 34, 126, 135, 259, 341, 582, 776, 818
MhlI GDGCHC 2 cut(s) 104, 467
MluCI AATT 6 cut(s) 28, 250, 401, 437, 564, 653
MlyI GAGTC 1 cut(s) 776
MnlI CCTC 6 cut(s) 388, 445, 488, 708, 733, 766
MseI TTAA 2 cut(s) 177, 267
MslI CAYNNNNRTG 1 cut(s) 137
MspCI CTTAAG 1 cut(s) 266
MspI CCGG 3 cut(s) 348, 354, 660
MspR9I CCNGG 3 cut(s) 354, 531, 644
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 2 cut(s) 531, 644
MwoI GCNNNNNNNGC 4 cut(s) 617, 724, 849, 875
NciI CCSGG 1 cut(s) 354
NdeII GATC 1 cut(s) 163
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 4 cut(s) 217, 246, 434, 513
NlaIV GGNNCC 2 cut(s) 352, 358
NmuCI GTSAC 4 cut(s) 32, 130, 304, 836
NspI RCATGY 2 cut(s) 217, 513
OliI CACNNNNGTG 1 cut(s) 137
PagI TCATGA 1 cut(s) 430
PciI ACATGT 2 cut(s) 213, 509
PciSI GCTCTTC 1 cut(s) 565
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 3 cut(s) 117, 789, 887
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 4 cut(s) 541, 577, 613, 845
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
Ppu21I YACGTR 1 cut(s) 735
PscI ACATGT 2 cut(s) 213, 509
PshBI ATTAAT 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 529, 642
PspGI CCWGG 2 cut(s) 529, 642
PspN4I GGNNCC 2 cut(s) 352, 358
PspPI GGNCC 3 cut(s) 345, 350, 412
PstNI CAGNNNCTG 1 cut(s) 482
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 565
SaqAI TTAA 2 cut(s) 177, 267
SatI GCNGC 4 cut(s) 540, 576, 612, 844
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 3 cut(s) 345, 350, 412
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 3 cut(s) 354, 531, 644
SduI GDGCHC 2 cut(s) 104, 467
SfaNI GCATC 3 cut(s) 97, 364, 861
SfcI CTRYAG 1 cut(s) 17
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 2 cut(s) 97, 266
SmoI CTYRAG 2 cut(s) 97, 266
SnaBI TACGTA 1 cut(s) 735
Sse9I AATT 6 cut(s) 28, 250, 401, 437, 564, 653
SspMI CTAG 4 cut(s) 75, 486, 681, 719
StyD4I CCNGG 3 cut(s) 352, 529, 642
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 4 cut(s) 232, 239, 469, 712
TaiI ACGT 2 cut(s) 285, 737
TaqI TCGA 3 cut(s) 325, 399, 450
TasI AATT 6 cut(s) 28, 250, 401, 437, 564, 653
TfiI GAWTC 3 cut(s) 117, 789, 887
Tru1I TTAA 2 cut(s) 177, 267
Tru9I TTAA 2 cut(s) 177, 267
TscAI CASTG 4 cut(s) 235, 472, 717, 808
TseFI GTSAC 4 cut(s) 32, 130, 304, 836
TseI GCWGC 4 cut(s) 539, 575, 611, 843
Tsp45I GTSAC 4 cut(s) 32, 130, 304, 836
TspDTI ATGAA 1 cut(s) 419
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 4 cut(s) 235, 472, 717, 808
Tth111I GACNNNGTC 1 cut(s) 38
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 345
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 2 cut(s) 401, 437
XceI RCATGY 2 cut(s) 217, 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XmiI GTMKAC 2 cut(s) 210, 702
XspI CTAG 4 cut(s) 75, 486, 681, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.