pycom06g13820

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000502
Physical Location & Seq
Reverse (-)
18697336 .. 18700433
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13820.6

Sequence Viewer

Length: 1038 bp
ATGCTAGTAACCGGCTATTCCGGGAAGATCAAGGTCGGAATCAATGGATTTGGAAGGATCGGAAGGTTGGTCGCTAGAATTGCTCTGCAGAGAGAGGATATCGAACTCGTCGCCATTAATGATCCCTTCATCACCGGCGATTACATGGTGTACATGTTCAACTACGACACCGTCCACGGACGCTGGAAGCATAACGATGTGAAGCTGAAGAACGCAGACACCCTTCTCTTTGGTGACAAGCCCGTCTCTATTTTTGCTGTCAGAGACCCGGTGGAGATCCCGTGGTCCGGGAGCGGAGCTGAGTACATCGTTGAGTCGACCGGTGTTTTCACCGACAAGGAAAAGGCTGCTGCCCATCTGAAGGGTGGAGCTAAGAAAGTTATCATCTCAGCCCCCAGCAAAGACGCTCCTATGTTCGTTGTCGGTGTCAATGAGAAGGACTACATGAAAGATCTTGATATTGTTTCCAATGCTAGTTGCACCACCAACTGCCTTGCCCCCCTTGCGAAGGTTATTCATGATAGATTCGGTATTGTGGAGGGTCTGATGACCACAGTTCACTCCATTACTGCCACCCAGAAAACTGTTGATGGACCTTCTTCGAAGGATTGGAGAGGTGGAAGGGCAGCTTCATTCAACATCATTCCCAGCAGTACTGGAGCTGCAAAGGCTGTTGGTAAAGTGCTGCCTGACCTGAACGGAAAATTGACGGGAATGGCATTCCGTGTTCCTACTGTCGATGTCTCGGTGGTTGACCTTACAGTGAGGCTGGCAAAAGCAGCTACTTATGATGAAGTAAAAGCTGCTATCAAGGAGGAGTCTGAGGGGAAACTGAACGGAATCCTGGGTTACACCGAAGATGATGTGGTTTCCACCGACCTTGTGGGCGACAGCAGGTCAAGTATTTTTGACGCAAAAGCCGGAATTGCTTTGAACGATAATTTCATCAAGCTGATCTCGTGGTATGACAACGAGTGGGGATATAGCTGCCGTGTGGTCGATCTGATTTCCTACATCGCATCTGTTGATCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

346

Amino Acids

37.27

Weight (kDa)

5.81

Isoelectric Point (pI)

22.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 885
AccBSI CCGCTC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 317
AciI CCGC 1 cut(s) 294
AclWI GGATC 3 cut(s) 65, 116, 271
AcuI CTGAAG 2 cut(s) 227, 380
AfaI GTAC 3 cut(s) 152, 305, 655
AfiI CCNNNNNNNGG 3 cut(s) 287, 361, 508
AflIII ACRYGT 1 cut(s) 153
AgeI ACCGGT 1 cut(s) 320
AgsI TTSAA 3 cut(s) 160, 637, 934
AhdI GACNNNNNGTC 1 cut(s) 895
AjnI CCWGG 1 cut(s) 843
AluBI AGCT 9 cut(s) 205, 299, 371, 629, 662, 782, 803, 952, 987
AluI AGCT 9 cut(s) 205, 299, 371, 629, 662, 782, 803, 952, 987
Alw26I GTCTC 3 cut(s) 250, 258, 748
AlwI GGATC 3 cut(s) 65, 116, 271
ApeKI GCWGC 8 cut(s) 347, 350, 626, 662, 685, 779, 803, 987
AseI ATTAAT 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 285, 593
AsuC2I CCSGG 3 cut(s) 22, 269, 289
AsuHPI GGTGA 3 cut(s) 124, 245, 322
AsuII TTCGAA 1 cut(s) 602
AvaII GGWCC 2 cut(s) 285, 593
BauI CACGAG 1 cut(s) 958
BbvI GCAGC 8 cut(s) 334, 337, 638, 649, 672, 790, 791, 974
BccI CCATC 2 cut(s) 363, 584
BceAI ACGGC 1 cut(s) 975
BciT130I CCWGG 1 cut(s) 845
BcnI CCSGG 3 cut(s) 22, 269, 289
BcoDI GTCTC 3 cut(s) 250, 258, 748
BfaI CTAG 3 cut(s) 5, 75, 474
BfmI CTRYAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 885
BglII AGATCT 1 cut(s) 451
BisI GCNGC 8 cut(s) 348, 351, 627, 663, 686, 780, 804, 988
BlsI GCNGC 8 cut(s) 349, 352, 628, 664, 687, 781, 805, 989
BmcAI AGTACT 1 cut(s) 655
Bme1390I CCNGG 4 cut(s) 22, 269, 289, 845
Bme18I GGWCC 2 cut(s) 285, 593
BmeRI GACNNNNNGTC 1 cut(s) 895
BmgT120I GGNCC 2 cut(s) 285, 593
BmrFI CCNGG 4 cut(s) 22, 269, 289, 845
BmsI GCATC 1 cut(s) 1028
BpmI CTGGAG 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 3 cut(s) 22, 269, 289
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 175, 281, 844
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 361, 508
Bse118I RCCGGY 3 cut(s) 11, 134, 320
Bse1I ACTGG 1 cut(s) 661
BseBI CCWGG 1 cut(s) 845
BseDI CCNNGG 3 cut(s) 175, 281, 844
BseLI CCNNNNNNNGG 3 cut(s) 287, 361, 508
BseMII CTCAG 3 cut(s) 291, 402, 813
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 8 cut(s) 334, 337, 638, 649, 672, 790, 791, 974
BseYI CCCAGC 2 cut(s) 395, 647
Bsh1285I CGRYCG 1 cut(s) 321
BshTI ACCGGT 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 7 cut(s) 12, 21, 135, 269, 288, 321, 921
BslI CCNNNNNNNGG 3 cut(s) 287, 361, 508
BsmAI GTCTC 3 cut(s) 250, 258, 748
BsmBI CGTCTC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 719
Bso31I GGTCTC 1 cut(s) 258
Bsp119I TTCGAA 1 cut(s) 602
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 8 cut(s) 27, 57, 121, 276, 451, 954, 1000, 1027
BspACI CCGC 1 cut(s) 294
BspCNI CTCAG 3 cut(s) 292, 401, 814
BspHI TCATGA 1 cut(s) 517
BspMAI CTGCAG 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 885
BspPI GGATC 3 cut(s) 65, 116, 271
BspT104I TTCGAA 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 258
BsrBI CCGCTC 1 cut(s) 294
BsrFI RCCGGY 3 cut(s) 11, 134, 320
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 3 cut(s) 11, 134, 320
BssECI CCNNGG 3 cut(s) 175, 281, 844
BssMI GATC 8 cut(s) 27, 57, 121, 276, 451, 954, 1000, 1027
BssSI CACGAG 1 cut(s) 958
Bst2BI CACGAG 1 cut(s) 958
Bst2UI CCWGG 1 cut(s) 845
Bst4CI ACNGT 5 cut(s) 172, 556, 586, 736, 763
BstAUI TGTACA 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 771
BstDEI CTNAG 4 cut(s) 300, 372, 388, 822
BstDSI CCRYGG 2 cut(s) 175, 281
BstENI CCTNNNNNAGG 1 cut(s) 506
BstKTI GATC 8 cut(s) 30, 60, 124, 279, 454, 957, 1003, 1030
BstMAI GTCTC 3 cut(s) 250, 258, 748
BstMBI GATC 8 cut(s) 27, 57, 121, 276, 451, 954, 1000, 1027
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 5 cut(s) 80, 503, 668, 779, 926
BstNI CCWGG 1 cut(s) 845
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 4 cut(s) 20, 267, 287, 843
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 8 cut(s) 334, 337, 638, 649, 672, 790, 791, 974
BstX2I RGATCY 2 cut(s) 276, 451
BstYI RGATCY 2 cut(s) 276, 451
BtgI CCRYGG 2 cut(s) 175, 281
BtgZI GCGATG 1 cut(s) 1000
BtsIMutI CAGTG 1 cut(s) 768
BveI ACCTGC 1 cut(s) 885
Cac8I GCNNGC 1 cut(s) 771
CciI TCATGA 1 cut(s) 517
Cfr10I RCCGGY 3 cut(s) 11, 134, 320
Cfr13I GGNCC 2 cut(s) 285, 593
CseI GACGC 3 cut(s) 189, 413, 920
Csp6I GTAC 3 cut(s) 151, 304, 654
CspAI ACCGGT 1 cut(s) 320
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
CviAII CATG 4 cut(s) 145, 154, 445, 518
CviQI GTAC 3 cut(s) 151, 304, 654
DdeI CTNAG 4 cut(s) 300, 372, 388, 822
DpnI GATC 8 cut(s) 29, 59, 123, 278, 453, 956, 1002, 1029
DpnII GATC 8 cut(s) 27, 57, 121, 276, 451, 954, 1000, 1027
DrdI GACNNNNNNGTC 1 cut(s) 242
DriI GACNNNNNGTC 1 cut(s) 895
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1105I GACNNNNNGTC 1 cut(s) 895
Eco31I GGTCTC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 285, 593
Eco57I CTGAAG 2 cut(s) 227, 380
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 843
EcoRV GATATC 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 4 cut(s) 148, 157, 448, 521
FaiI YATR 9 cut(s) 146, 155, 192, 413, 446, 519, 789, 966, 984
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FatI CATG 4 cut(s) 144, 153, 444, 517
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 8 cut(s) 348, 351, 627, 663, 686, 780, 804, 988
Fsp4HI GCNGC 8 cut(s) 348, 351, 627, 663, 686, 780, 804, 988
FspBI CTAG 3 cut(s) 5, 75, 474
GluI GCNGC 8 cut(s) 348, 351, 627, 663, 686, 780, 804, 988
GsaI CCCAGC 2 cut(s) 399, 651
GsuI CTGGAG 1 cut(s) 678
HapII CCGG 7 cut(s) 12, 21, 135, 269, 288, 321, 921
HgaI GACGC 3 cut(s) 189, 413, 920
Hin1II CATG 4 cut(s) 148, 157, 448, 521
HincII GTYRAC 2 cut(s) 318, 754
HindII GTYRAC 2 cut(s) 318, 754
HinfI GANTC 5 cut(s) 39, 314, 525, 818, 840
HpaII CCGG 7 cut(s) 12, 21, 135, 269, 288, 321, 921
HphI GGTGA 3 cut(s) 124, 245, 322
Hpy166II GTNNAC 5 cut(s) 151, 175, 318, 559, 754
Hpy188I TCNGA 7 cut(s) 38, 62, 263, 360, 546, 823, 1005
Hpy188III TCNNGA 2 cut(s) 455, 518
Hpy8I GTNNAC 5 cut(s) 151, 175, 318, 559, 754
Hpy99I CGWCG 1 cut(s) 113
HpyCH4III ACNGT 5 cut(s) 172, 556, 586, 736, 763
HpyCH4V TGCA 3 cut(s) 88, 480, 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 503, 668, 779, 926
HpyF3I CTNAG 4 cut(s) 300, 372, 388, 822
Hsp92II CATG 4 cut(s) 148, 157, 448, 521
Kzo9I GATC 8 cut(s) 27, 57, 121, 276, 451, 954, 1000, 1027
LmnI GCTCC 5 cut(s) 291, 296, 368, 412, 659
Lsp1109I GCAGC 8 cut(s) 334, 337, 638, 649, 672, 790, 791, 974
LweI GCATC 1 cut(s) 1028
MaeI CTAG 3 cut(s) 5, 75, 474
MaeIII GTNAC 3 cut(s) 7, 233, 848
MalI GATC 8 cut(s) 29, 59, 123, 278, 453, 956, 1002, 1029
MbiI CCGCTC 1 cut(s) 294
MboI GATC 8 cut(s) 27, 57, 121, 276, 451, 954, 1000, 1027
MboII GAAGA 4 cut(s) 37, 220, 591, 869
MflI RGATCY 2 cut(s) 276, 451
MluCI AATT 4 cut(s) 78, 704, 924, 940
MlyI GAGTC 2 cut(s) 323, 827
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 6 cut(s) 88, 532, 608, 759, 808, 817
MseI TTAA 2 cut(s) 117, 1036
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 7 cut(s) 12, 21, 135, 269, 288, 321, 921
MspR9I CCNGG 4 cut(s) 22, 269, 289, 845
Mva1269I GAATGC 1 cut(s) 719
MvaI CCWGG 1 cut(s) 845
MwoI GCNNNNNNNGC 5 cut(s) 80, 503, 668, 779, 926
NciI CCSGG 3 cut(s) 22, 269, 289
NdeII GATC 8 cut(s) 27, 57, 121, 276, 451, 954, 1000, 1027
NlaIII CATG 4 cut(s) 148, 157, 448, 521
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 157
NspV TTCGAA 1 cut(s) 602
PagI TCATGA 1 cut(s) 517
PciI ACATGT 1 cut(s) 153
PctI GAATGC 1 cut(s) 719
PfeI GAWTC 3 cut(s) 39, 525, 840
PflFI GACNNNGTC 1 cut(s) 170
PfoI TCCNGGA 2 cut(s) 20, 287
PinAI ACCGGT 1 cut(s) 320
PkrI GCNGC 8 cut(s) 349, 352, 628, 664, 687, 781, 805, 989
PleI GAGTC 2 cut(s) 322, 826
PpsI GAGTC 2 cut(s) 322, 826
PscI ACATGT 1 cut(s) 153
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 843
PspFI CCCAGC 2 cut(s) 395, 647
PspGI CCWGG 1 cut(s) 843
PspPI GGNCC 2 cut(s) 285, 593
PstI CTGCAG 1 cut(s) 90
PsuI RGATCY 2 cut(s) 276, 451
PsyI GACNNNGTC 1 cut(s) 170
RsaI GTAC 3 cut(s) 152, 305, 655
RsaNI GTAC 3 cut(s) 151, 304, 654
RseI CAYNNNNRTG 1 cut(s) 195
SalI GTCGAC 1 cut(s) 316
SaqAI TTAA 2 cut(s) 117, 1036
SatI GCNGC 8 cut(s) 348, 351, 627, 663, 686, 780, 804, 988
Sau3AI GATC 8 cut(s) 27, 57, 121, 276, 451, 954, 1000, 1027
Sau96I GGNCC 2 cut(s) 285, 593
ScaI AGTACT 1 cut(s) 655
SchI GAGTC 2 cut(s) 323, 827
ScrFI CCNGG 4 cut(s) 22, 269, 289, 845
SfaNI GCATC 1 cut(s) 1028
SfcI CTRYAG 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 602
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 2 cut(s) 285, 593
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 4 cut(s) 78, 704, 924, 940
SsiI CCGC 1 cut(s) 294
SspMI CTAG 3 cut(s) 5, 75, 474
StyD4I CCNGG 4 cut(s) 20, 267, 287, 843
TaaI ACNGT 5 cut(s) 172, 556, 586, 736, 763
TaqI TCGA 5 cut(s) 102, 317, 602, 738, 999
TasI AATT 4 cut(s) 78, 704, 924, 940
TatI WGTACW 3 cut(s) 150, 303, 653
TfiI GAWTC 3 cut(s) 39, 525, 840
Tru1I TTAA 2 cut(s) 117, 1036
Tru9I TTAA 2 cut(s) 117, 1036
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 8 cut(s) 347, 350, 626, 662, 685, 779, 803, 987
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 6 cut(s) 118, 461, 506, 621, 807, 934
TspGWI ACGGA 4 cut(s) 192, 713, 714, 852
TspRI CASTG 1 cut(s) 768
Tth111I GACNNNGTC 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 285, 593
VspI ATTAAT 1 cut(s) 117
XagI CCTNNNNNAGG 1 cut(s) 506
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 2 cut(s) 362, 880
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 3 cut(s) 5, 75, 474
ZrmI AGTACT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.