Rorug04G0249800

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
42204765 .. 42208011
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0249800.1

Sequence Viewer

Length: 804 bp
ATGGAAGGCTCAGGCAATGAACGTCCCAGTTTTGGGAAGATGGGTTACGGATGCAAGCATTACAGAAGGAGATGCCAGATTCGAGCTCCGTGTTGTAACGAGATCTACCCATGTCGCCATTGTCACAATGAAGCCACGAGCATGTTGAGCAACCCCTTTGATCGGCATGAGCTCGTTCGCCACGATGTTAAACAAGTTATTTGTTCAGTCTGTGACACAGAGCAGCCGGTGGCTCAAGTTTGTACCAACTGCGGCGTTAGTATGGGGGAATATTTCTGTGATATTTGCAAGTTCTATGATGATGATACAGAGAAAGGGCAATTTCACTGTCATGATTGTGGGATCTGCAGAATCGGTGGTCGTGAACATTTTTATCACTGCAAGAAGTGTGGGTCTTGCTATTCGATTGGCTTGCGTGATAATCACCTGTGTGTAGAGAACTCCATGCGGCACCACTGCCCCATTTGTTATGAGTTCCTTTTTGACTCGCTGAAAGACACTACTGTATTGAAATGTGGGCACACAATGCATTGTGAATGTTACAACGAAATGATAAAGCGGGACAAATATTGTTGTCCAATATGCTCCAAGTCAGTGATTGACATGTCTAGAACGTGGAAGAGAATAGATGAAGAGATAGAAGCAACTGTTATGCCCGAGGATTATCGGAATAAGAAGGTTTGGATCCTGTGCAATGACTGCAATGACACAACCGAAGTTTACTTCCACATTATTGGCCAGAAATGCAACCACTGCAAATCATACAACACCCGCACAATTGCCCCTCCAGTTCTTCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008886 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009651 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016491 GO:0016620 GO:0016903 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0022414 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032787 GO:0034285 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042493 GO:0042542 GO:0042579 GO:0042742 GO:0042866 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043891 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046677 GO:0046686 GO:0046700 GO:0046872 GO:0046914 GO:0046939 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0051775 GO:0055044 GO:0055086 GO:0055114 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700
Pfam Domains
Protein Families

Protein Analysis

267

Amino Acids

31.05

Weight (kDa)

6.92

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 18 - 91 3e-21 CHY zinc finger
zf-RING_2 PF13639 152 - 195 2.9e-06 Ring finger domain
zinc_ribbon_6 PF14599 200 - 258 9.5e-28 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 450
AciI CCGC 4 cut(s) 252, 448, 559, 772
AclWI GGATC 3 cut(s) 350, 679, 692
AcoI YGGCCR 1 cut(s) 736
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 3 cut(s) 32, 33, 162
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 1 cut(s) 511
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 2 cut(s) 86, 172
AluI AGCT 2 cut(s) 86, 172
Alw21I GWGCWC 2 cut(s) 88, 174
AlwI GGATC 3 cut(s) 350, 679, 692
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 656
BaeGI GKGCMC 1 cut(s) 522
BalI TGGCCA 1 cut(s) 738
BamHI GGATCC 1 cut(s) 684
BanI GGYRCC 1 cut(s) 450
BanII GRGCYC 2 cut(s) 88, 174
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BauI CACGAG 1 cut(s) 136
Bbv12I GWGCWC 2 cut(s) 88, 174
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 346
BglII AGATCT 1 cut(s) 102
BisI GCNGC 3 cut(s) 224, 253, 449
BlsI GCNGC 3 cut(s) 225, 254, 450
BmeT110I CYCGRG 1 cut(s) 656
BmiI GGNNCC 2 cut(s) 452, 686
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 41, 62
BmuI ACTGGG 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 771
Bpu10I CCTNAGC 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 657
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 33, 162
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 27, 788
Bse3DI GCAATG 3 cut(s) 22, 700, 709
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 3 cut(s) 32, 33, 162
BseMI GCAATG 3 cut(s) 22, 700, 709
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 27, 788
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 738
BshNI GGYRCC 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 88, 174
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 2 cut(s) 9, 575
BslI CCNNNNNNNGG 3 cut(s) 32, 33, 162
BsmFI GGGAC 2 cut(s) 9, 575
BsnI GGCC 1 cut(s) 738
BsoBI CYCGRG 1 cut(s) 656
Bsp1286I GDGCHC 3 cut(s) 88, 174, 522
Bsp143I GATC 4 cut(s) 102, 160, 342, 684
BspACI CCGC 4 cut(s) 252, 448, 559, 772
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 452, 686
BspMAI CTGCAG 1 cut(s) 350
BspPI GGATC 3 cut(s) 350, 679, 692
BspT107I GGYRCC 1 cut(s) 450
BsrDI GCAATG 3 cut(s) 22, 700, 709
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 27, 788
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 4 cut(s) 102, 160, 342, 684
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 329, 505, 649
Bst6I CTCTTC 2 cut(s) 614, 627
BstAPI GCANNNNNTGC 3 cut(s) 526, 699, 753
BstC8I GCNNGC 2 cut(s) 56, 413
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 4 cut(s) 105, 163, 345, 687
BstMBI GATC 4 cut(s) 102, 160, 342, 684
BstMWI GCNNNNNNNGC 5 cut(s) 147, 526, 699, 744, 753
BstNSI RCATGY 2 cut(s) 145, 607
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 3 cut(s) 102, 342, 684
BstXI CCANNNNNNTGG 1 cut(s) 734
BstYI RGATCY 3 cut(s) 102, 342, 684
BsuRI GGCC 1 cut(s) 738
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 3 cut(s) 376, 454, 751
BtsIMutI CAGTG 5 cut(s) 325, 376, 454, 600, 751
Cac8I GCNNGC 2 cut(s) 56, 413
CciI TCATGA 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 226
Csp6I GTAC 1 cut(s) 243
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 6 cut(s) 111, 142, 167, 332, 445, 604
CviJI RGCY 8 cut(s) 9, 86, 134, 172, 226, 233, 411, 738
CviKI_1 RGCY 8 cut(s) 9, 86, 134, 172, 226, 233, 411, 738
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 10
DpnI GATC 4 cut(s) 104, 162, 344, 686
DpnII GATC 4 cut(s) 102, 160, 342, 684
EaeI YGGCCR 1 cut(s) 736
Eam1104I CTCTTC 2 cut(s) 614, 627
EarI CTCTTC 2 cut(s) 614, 627
Ecl136II GAGCTC 2 cut(s) 86, 172
Eco24I GRGCYC 2 cut(s) 88, 174
Eco53kI GAGCTC 2 cut(s) 86, 172
Eco88I CYCGRG 1 cut(s) 656
EcoICRI GAGCTC 2 cut(s) 86, 172
EcoT22I ATGCAT 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 88, 174
FaeI CATG 6 cut(s) 114, 145, 170, 335, 448, 607
FaqI GGGAC 2 cut(s) 9, 575
FatI CATG 6 cut(s) 110, 141, 166, 331, 444, 603
FauI CCCGC 2 cut(s) 552, 779
Fnu4HI GCNGC 3 cut(s) 224, 253, 449
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 2 cut(s) 88, 174
Fsp4HI GCNGC 3 cut(s) 224, 253, 449
FspBI CTAG 1 cut(s) 609
GluI GCNGC 3 cut(s) 224, 253, 449
GsuI CTGGAG 1 cut(s) 771
HaeIII GGCC 1 cut(s) 738
HapII CCGG 1 cut(s) 227
Hin1II CATG 6 cut(s) 114, 145, 170, 335, 448, 607
HinfI GANTC 3 cut(s) 79, 351, 485
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 365, 721
Hpy188I TCNGA 1 cut(s) 669
Hpy188III TCNNGA 3 cut(s) 332, 362, 609
Hpy8I GTNNAC 2 cut(s) 365, 721
HpyAV CCTTC 2 cut(s) 60, 670
HpyCH4III ACNGT 3 cut(s) 329, 505, 649
HpyCH4IV ACGT 2 cut(s) 22, 614
HpyCH4V TGCA 9 cut(s) 54, 288, 348, 381, 529, 693, 702, 747, 756
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 526, 699, 744, 753
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 2 cut(s) 22, 614
Hsp92II CATG 6 cut(s) 114, 145, 170, 335, 448, 607
Kzo9I GATC 4 cut(s) 102, 160, 342, 684
LmnI GCTCC 2 cut(s) 91, 590
LpnPI CCDG 6 cut(s) 40, 89, 240, 440, 701, 752
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 2 cut(s) 41, 62
MaeI CTAG 1 cut(s) 609
MaeII ACGT 2 cut(s) 22, 614
MaeIII GTNAC 5 cut(s) 44, 95, 122, 212, 539
MalI GATC 4 cut(s) 104, 162, 344, 686
MboI GATC 4 cut(s) 102, 160, 342, 684
MboII GAAGA 4 cut(s) 49, 631, 644, 785
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 3 cut(s) 102, 342, 684
MhlI GDGCHC 3 cut(s) 88, 174, 522
MlsI TGGCCA 1 cut(s) 738
MluCI AATT 2 cut(s) 320, 777
MluNI TGGCCA 1 cut(s) 738
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 2 cut(s) 652, 795
Mox20I TGGCCA 1 cut(s) 738
Mph1103I ATGCAT 1 cut(s) 531
MscI TGGCCA 1 cut(s) 738
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 4 cut(s) 140, 330, 336, 429
Msp20I TGGCCA 1 cut(s) 738
MspI CCGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 777
MwoI GCNNNNNNNGC 5 cut(s) 147, 526, 699, 744, 753
NdeII GATC 4 cut(s) 102, 160, 342, 684
NlaIII CATG 6 cut(s) 114, 145, 170, 335, 448, 607
NlaIV GGNNCC 2 cut(s) 452, 686
NmuCI GTSAC 2 cut(s) 122, 212
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 2 cut(s) 145, 607
OliI CACNNNNGTG 1 cut(s) 429
PagI TCATGA 1 cut(s) 331
PciI ACATGT 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 2 cut(s) 79, 351
PkrI GCNGC 3 cut(s) 225, 254, 450
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PscI ACATGT 1 cut(s) 603
Psp124BI GAGCTC 2 cut(s) 88, 174
PspN4I GGNNCC 2 cut(s) 452, 686
PstI CTGCAG 1 cut(s) 350
PsuI RGATCY 3 cut(s) 102, 342, 684
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 4 cut(s) 140, 330, 336, 429
SacI GAGCTC 2 cut(s) 88, 174
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 3 cut(s) 224, 253, 449
Sau3AI GATC 4 cut(s) 102, 160, 342, 684
SchI GAGTC 1 cut(s) 479
SduI GDGCHC 3 cut(s) 88, 174, 522
SetI ASST 6 cut(s) 25, 88, 174, 429, 617, 681
SfaNI GCATC 2 cut(s) 41, 62
SfcI CTRYAG 1 cut(s) 346
SmiMI CAYNNNNRTG 4 cut(s) 140, 330, 336, 429
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 2 cut(s) 320, 777
SsiI CCGC 4 cut(s) 252, 448, 559, 772
SspI AATATT 2 cut(s) 272, 569
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 2 cut(s) 88, 174
TaaI ACNGT 3 cut(s) 329, 505, 649
TaiI ACGT 2 cut(s) 25, 617
TaqI TCGA 2 cut(s) 82, 404
TasI AATT 2 cut(s) 320, 777
TauI GCSGC 2 cut(s) 255, 451
TfiI GAWTC 2 cut(s) 79, 351
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 5 cut(s) 332, 383, 461, 600, 758
TseFI GTSAC 2 cut(s) 122, 212
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 2 cut(s) 122, 212
TspDTI ATGAA 3 cut(s) 33, 144, 645
TspGWI ACGGA 2 cut(s) 63, 78
TspRI CASTG 5 cut(s) 332, 383, 461, 600, 758
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 2 cut(s) 145, 607
XspI CTAG 1 cut(s) 609
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.