RchiOBHm_Chr7g0190831

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000502
Physical Location & Seq
Reverse (-)
9767585 .. 9770762
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17048

Sequence Viewer

Length: 969 bp
ATGGGATTTGGAAGAATTGGAAGATTGGTCACAAGAGTGGCTTTGCAAAGAGACGATATTGATCTTGTTTGCATTAACGACCCCTACATCACGGCCGACTACATTGTCTACATGTTCAAGCACGACACTATTCACGGTGCATGGAAGAATTGTGAGGTGAAACTTAAGAATGCAAACCACGTAACAAGGAAGTCACCATTTCTGCAATCAGAAGACGAAATCCCTTGGTCCGGCCCAGGAGCCGAATATATCGTGGATGCCTCTGGTACTGCCACTGAAATCGAATTTGCTCAGGGCCATTTGAAGGGCGGAGCAAAGAAGGTTATTGTCACTTGCCCGTGTGATAGTGCTTCTGCGTTTGTTGTGGGTGTCAATGAGAAGGAATACAAGCCGGAGCTTAATGTTATTTCCGGTGCTAGTTGCACCACCAACTGCCTTGCCCCCCTTGCAAAGGTCATTCATGATAAATTTGGAATCATCGAGGGTCTGATGAGCACTGTTCACTCAGTTACTGCTAGCCAAAGAGGTGTTGATGGAACATGTCCTAATGATTGGAGACCTGGAAAAGCTACACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCTACTACTACCGGAGCTGCTAAGGCTGTTGGTAAAGCTCTACCTGACCTGGATGGTAAATTGACCAGAATGTCATTCCGTGTTCCTAGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGGCTAGAAAAGCCGGCTACGTATGAGGAAATAAAAGCTGCCATCAAGGAAGAGTCTGAGGGAAACTTGAAGGGAATCTTGGGTTACACTGAAGATGATGTGGTCTCTACCGACTTTGAGCATGACAGCAGGTCAAGTATTTTTGATGCAAAGGCCGGAATTGCTTTGAATGATAACTTCCACAAGTTGGTCGCATGGTACGACAACGAGTGGGGATACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

322

Amino Acids

35.27

Weight (kDa)

5.8

Isoelectric Point (pI)

29.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 2 - 92 1.6e-18 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 146 - 190 2.5e-12 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 193 - 315 5.7e-47 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 104, 694
Acc36I ACCTGC 1 cut(s) 864
AccB7I CCANNNNNTGG 1 cut(s) 931
AccI GTMKAC 2 cut(s) 108, 732
AciI CCGC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 284, 467
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 2 cut(s) 268, 944
AfiI CCNNNNNNNGG 4 cut(s) 230, 304, 451, 931
AflII CTTAAG 1 cut(s) 164
AflIII ACRYGT 2 cut(s) 111, 539
AgsI TTSAA 4 cut(s) 118, 304, 814, 913
AhdI GACNNNNNGTC 1 cut(s) 874
AjnI CCWGG 3 cut(s) 235, 559, 672
AjuI GAANNNNNNNTTGG 2 cut(s) 806, 838
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 6 cut(s) 397, 569, 605, 641, 662, 782
AluI AGCT 6 cut(s) 397, 569, 605, 641, 662, 782
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 3 cut(s) 45, 550, 853
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 4 cut(s) 93, 232, 295, 897
ApeKI GCWGC 3 cut(s) 605, 641, 782
ApoI RAATTY 2 cut(s) 284, 467
AspS9I GGNCC 3 cut(s) 228, 233, 295
AsuHPI GGTGA 2 cut(s) 169, 186
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 3 cut(s) 592, 628, 769
BccI CCATC 3 cut(s) 527, 671, 794
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 3 cut(s) 237, 561, 674
BciVI GTATCC 1 cut(s) 953
BcoDI GTCTC 3 cut(s) 45, 550, 853
BfaI CTAG 4 cut(s) 417, 516, 711, 749
BfrI CTTAAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 864
BfuI GTATCC 1 cut(s) 953
BisI GCNGC 3 cut(s) 606, 642, 783
BlsI GCNGC 3 cut(s) 607, 643, 784
Bme1390I CCNGG 3 cut(s) 237, 561, 674
Bme18I GGWCC 1 cut(s) 228
BmeRI GACNNNNNGTC 1 cut(s) 874
BmgT120I GGNCC 3 cut(s) 228, 233, 295
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 237, 561, 674
BmsI GCATC 2 cut(s) 247, 880
BmtI GCTAGC 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 2 cut(s) 291, 645
BsaAI YACGTR 2 cut(s) 181, 765
BsaBI GATNNNNATC 1 cut(s) 60
BsaI GGTCTC 2 cut(s) 550, 853
BsaJI CCNNGG 2 cut(s) 224, 235
BsaWI WCCGGW 2 cut(s) 410, 635
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 304, 451, 931
Bse118I RCCGGY 1 cut(s) 757
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 3 cut(s) 237, 561, 674
BseDI CCNNGG 2 cut(s) 224, 235
BseGI GGATG 2 cut(s) 262, 682
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 4 cut(s) 230, 304, 451, 931
BseMII CTCAG 3 cut(s) 305, 519, 792
BseX3I CGGCCG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 592, 628, 769
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 4 cut(s) 95, 234, 297, 899
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 497
BsiSI CCGG 6 cut(s) 231, 392, 411, 636, 758, 900
BslI CCNNNNNNNGG 4 cut(s) 230, 304, 451, 931
BsmAI GTCTC 3 cut(s) 45, 550, 853
BsmBI CGTCTC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 4 cut(s) 95, 234, 297, 899
Bso31I GGTCTC 2 cut(s) 550, 853
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 309
BspANI GGCC 4 cut(s) 95, 234, 297, 899
BspCNI CTCAG 3 cut(s) 304, 518, 793
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 864
BspOI GCTAGC 1 cut(s) 519
BspQI GCTCTTC 1 cut(s) 595
BspTI CTTAAG 1 cut(s) 164
BspTNI GGTCTC 2 cut(s) 550, 853
BsrFI RCCGGY 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 757
BssECI CCNNGG 2 cut(s) 224, 235
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 3 cut(s) 237, 561, 674
Bst4CI ACNGT 3 cut(s) 137, 499, 742
Bst6I CTCTTC 2 cut(s) 595, 789
BstAFI CTTAAG 1 cut(s) 164
BstBAI YACGTR 2 cut(s) 181, 765
BstC8I GCNNGC 2 cut(s) 517, 759
BstDEI CTNAG 4 cut(s) 291, 505, 645, 801
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 2 cut(s) 262, 682
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 3 cut(s) 45, 550, 853
BstMBI GATC 1 cut(s) 61
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 4 cut(s) 446, 647, 754, 905
BstNI CCWGG 3 cut(s) 237, 561, 674
BstNSI RCATGY 2 cut(s) 115, 543
BstSCI CCNGG 3 cut(s) 235, 559, 672
BstSNI TACGTA 1 cut(s) 765
BstV1I GCAGC 3 cut(s) 592, 628, 769
BstV2I GAAGAC 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 93
BsuI GTATCC 1 cut(s) 953
BsuRI GGCC 4 cut(s) 95, 234, 297, 899
BtsCI GGATG 2 cut(s) 262, 682
BtsIMutI CAGTG 4 cut(s) 273, 495, 747, 831
BveI ACCTGC 1 cut(s) 864
Cac8I GCNNGC 2 cut(s) 517, 759
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 757
Cfr13I GGNCC 3 cut(s) 228, 233, 295
Csp6I GTAC 2 cut(s) 267, 943
CviAII CATG 6 cut(s) 112, 141, 461, 540, 866, 939
CviQI GTAC 2 cut(s) 267, 943
DdeI CTNAG 4 cut(s) 291, 505, 645, 801
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DrdI GACNNNNNNGTC 2 cut(s) 104, 694
DriI GACNNNNNGTC 1 cut(s) 874
DseDI GACNNNNNNGTC 2 cut(s) 104, 694
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
Eam1104I CTCTTC 2 cut(s) 595, 789
Eam1105I GACNNNNNGTC 1 cut(s) 874
EarI CTCTTC 2 cut(s) 595, 789
EciI GGCGGA 1 cut(s) 324
EclXI CGGCCG 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 765
Eco130I CCWWGG 1 cut(s) 224
Eco31I GGTCTC 2 cut(s) 550, 853
Eco47I GGWCC 1 cut(s) 228
Eco52I CGGCCG 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 855
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoRII CCWGG 3 cut(s) 235, 559, 672
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 6 cut(s) 115, 144, 464, 543, 869, 942
FaiI YATR 9 cut(s) 113, 142, 249, 462, 541, 612, 768, 867, 940
FalI AAGNNNNNCTT 6 cut(s) 25, 57, 592, 624, 806, 838
FatI CATG 6 cut(s) 111, 140, 460, 539, 865, 938
FblI GTMKAC 2 cut(s) 108, 732
Fnu4HI GCNGC 3 cut(s) 606, 642, 783
FokI GGATG 2 cut(s) 269, 689
Fsp4HI GCNGC 3 cut(s) 606, 642, 783
FspBI CTAG 4 cut(s) 417, 516, 711, 749
GluI GCNGC 3 cut(s) 606, 642, 783
HaeIII GGCC 4 cut(s) 95, 234, 297, 899
HapII CCGG 6 cut(s) 231, 392, 411, 636, 758, 900
Hin1II CATG 6 cut(s) 115, 144, 464, 543, 869, 942
HinfI GANTC 3 cut(s) 474, 797, 819
HpaII CCGG 6 cut(s) 231, 392, 411, 636, 758, 900
HphI GGTGA 2 cut(s) 169, 186
Hpy166II GTNNAC 3 cut(s) 109, 502, 733
Hpy188I TCNGA 3 cut(s) 211, 489, 802
Hpy188III TCNNGA 2 cut(s) 461, 716
Hpy8I GTNNAC 3 cut(s) 109, 502, 733
HpyAV CCTTC 4 cut(s) 298, 313, 373, 808
HpyCH4III ACNGT 3 cut(s) 137, 499, 742
HpyCH4IV ACGT 2 cut(s) 180, 764
HpyCH4V TGCA 8 cut(s) 46, 72, 140, 173, 205, 423, 449, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 647, 754, 905
HpyF3I CTNAG 4 cut(s) 291, 505, 645, 801
HpySE526I ACGT 2 cut(s) 180, 764
Hsp92II CATG 6 cut(s) 115, 144, 464, 543, 869, 942
KroI GCCGGC 1 cut(s) 757
KroNI GCCGGC 1 cut(s) 759
Kzo9I GATC 1 cut(s) 61
LguI GCTCTTC 1 cut(s) 595
LmnI GCTCC 4 cut(s) 239, 311, 394, 638
Lsp1109I GCAGC 3 cut(s) 592, 628, 769
LweI GCATC 2 cut(s) 247, 880
MaeI CTAG 4 cut(s) 417, 516, 711, 749
MaeII ACGT 2 cut(s) 180, 764
MaeIII GTNAC 6 cut(s) 28, 181, 192, 328, 508, 827
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 7 cut(s) 24, 33, 157, 224, 612, 806, 848
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 7 cut(s) 15, 148, 284, 467, 594, 683, 903
MlyI GAGTC 1 cut(s) 806
MnlI CCTC 7 cut(s) 148, 271, 475, 518, 738, 763, 796
MroNI GCCGGC 1 cut(s) 757
MseI TTAA 3 cut(s) 75, 165, 399
MslI CAYNNNNRTG 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 6 cut(s) 231, 392, 411, 636, 758, 900
MspR9I CCNGG 3 cut(s) 237, 561, 674
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 3 cut(s) 237, 561, 674
MwoI GCNNNNNNNGC 4 cut(s) 446, 647, 754, 905
NaeI GCCGGC 1 cut(s) 759
NdeII GATC 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 757
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 6 cut(s) 115, 144, 464, 543, 869, 942
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 3 cut(s) 28, 192, 328
NspI RCATGY 2 cut(s) 115, 543
OliI CACNNNNGTG 1 cut(s) 35
PagI TCATGA 1 cut(s) 460
PciI ACATGT 2 cut(s) 111, 539
PciSI GCTCTTC 1 cut(s) 595
PcsI WCGNNNNNNNCGW 1 cut(s) 942
PctI GAATGC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 759
PfeI GAWTC 2 cut(s) 474, 819
PflMI CCANNNNNTGG 1 cut(s) 931
PkrI GCNGC 3 cut(s) 607, 643, 784
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
Ppu21I YACGTR 2 cut(s) 181, 765
PscI ACATGT 2 cut(s) 111, 539
Psp6I CCWGG 3 cut(s) 235, 559, 672
PspGI CCWGG 3 cut(s) 235, 559, 672
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 3 cut(s) 228, 233, 295
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 268, 944
RsaNI GTAC 2 cut(s) 267, 943
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 595
SaqAI TTAA 3 cut(s) 75, 165, 399
SatI GCNGC 3 cut(s) 606, 642, 783
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 3 cut(s) 228, 233, 295
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 3 cut(s) 237, 561, 674
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 2 cut(s) 247, 880
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SnaBI TACGTA 1 cut(s) 765
Sse9I AATT 7 cut(s) 15, 148, 284, 467, 594, 683, 903
SsiI CCGC 1 cut(s) 309
SspMI CTAG 4 cut(s) 417, 516, 711, 749
StyD4I CCNGG 3 cut(s) 235, 559, 672
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 137, 499, 742
TaiI ACGT 2 cut(s) 183, 767
TaqI TCGA 2 cut(s) 282, 480
TasI AATT 7 cut(s) 15, 148, 284, 467, 594, 683, 903
TfiI GAWTC 2 cut(s) 474, 819
Tru1I TTAA 3 cut(s) 75, 165, 399
Tru9I TTAA 3 cut(s) 75, 165, 399
TscAI CASTG 4 cut(s) 280, 502, 747, 838
TseFI GTSAC 3 cut(s) 28, 192, 328
TseI GCWGC 3 cut(s) 605, 641, 782
Tsp45I GTSAC 3 cut(s) 28, 192, 328
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 1 cut(s) 692
TspRI CASTG 4 cut(s) 280, 502, 747, 838
Van91I CCANNNNNTGG 1 cut(s) 931
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 2 cut(s) 284, 467
XceI RCATGY 2 cut(s) 115, 543
XmiI GTMKAC 2 cut(s) 108, 732
XspI CTAG 4 cut(s) 417, 516, 711, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.