Rh2DG682100

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000502
Physical Location & Seq
Forward (+)
90103989 .. 90106239
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG682100.1

Sequence Viewer

Length: 708 bp
ATGGCGAAGATCAAGATTGGCATAAATGGATTCGGAAGGATTGGCCGGTTGGTGGCCAGAGTTGCTCTGCAGAGAGATGACATCGAACTCGTTGCCATTAACGATCCTTTCTTGACTGCTGATCACATGAGATACATGTTTAAGTACGACAGTGTTCATGGGCAGTGGAAGCATGGCGAGCTTAAGGTTATCCACGATAAATTTGGTATCATAGAGGGTCTTATGACCACTGTCCATTCTATTACTGCTACTCAAAAGACTGTTGATAGTCCACTAATGAAAGACTGGAGAGGTGGTAGAGCTGCTGGCCATAACATCATTCCCACTAGTACTGGAGCTGCTGAGGGTGTTGGTAAAGTGCTGCTGGCACTAAATGGTAAGTTGACAGGAATGGCCTTCAGGGTTCCCACTGTTGATGTTTCCGTGGTTGACCTCACAGTGAGACTTGAGAAGAAGGCTACTTATGATGAGATTAAAAATGCTATCAAGGAAGAATCTGAGGGTAACCTAAAGGGAATCCTCGGATATATGGACGATGATTTAGTGTCCACTGACTTTGTGGATAACCACAGGTCAAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCGCGTGGTATGACAATGAATGGGGTTACAGCTCACGAGTCATCGACTTGATCTGTCACATGGCCACAGTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

235

Amino Acids

25.98

Weight (kDa)

6.44

Isoelectric Point (pI)

23.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 73 8.3e-21 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 61 - 214 1.3e-65 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 635
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 4 cut(s) 43, 54, 307, 693
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 382
AfaI GTAC 2 cut(s) 146, 331
AfiI CCNNNNNNNGG 1 cut(s) 52
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 610
AhlI ACTAGT 1 cut(s) 326
AluBI AGCT 5 cut(s) 181, 302, 338, 628, 663
AluI AGCT 5 cut(s) 181, 302, 338, 628, 663
Alw26I GTCTC 1 cut(s) 436
AlwI GGATC 1 cut(s) 98
AoxI GGCC 5 cut(s) 43, 54, 307, 393, 693
ApeKI GCWGC 3 cut(s) 302, 338, 361
ApoI RAATTY 1 cut(s) 200
BalI TGGCCA 3 cut(s) 56, 309, 695
BauI CACGAG 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 3 cut(s) 289, 325, 348
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 436
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 182
BisI GCNGC 3 cut(s) 303, 339, 362
BlsI GCNGC 3 cut(s) 304, 340, 363
BmcAI AGTACT 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 405
BmsI GCATC 1 cut(s) 577
BoxI GACNNNNGTC 1 cut(s) 230
BpmI CTGGAG 2 cut(s) 307, 354
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 3 cut(s) 423, 520, 591
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 290, 337
BseDI CCNNGG 3 cut(s) 423, 520, 591
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 333, 489
BseNI ACTGG 2 cut(s) 290, 337
BseXI GCAGC 3 cut(s) 289, 325, 348
Bsh1236I CGCG 1 cut(s) 635
BshFI GGCC 5 cut(s) 45, 56, 309, 395, 695
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 436
BsnI GGCC 5 cut(s) 45, 56, 309, 395, 695
Bsp143I GATC 4 cut(s) 9, 103, 121, 681
BspANI GGCC 5 cut(s) 45, 56, 309, 395, 695
BspCNI CTCAG 2 cut(s) 334, 490
BspFNI CGCG 1 cut(s) 635
BspLI GGNNCC 1 cut(s) 405
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 2 cut(s) 290, 337
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 3 cut(s) 423, 520, 591
BssMI GATC 4 cut(s) 9, 103, 121, 681
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 1 cut(s) 591
Bst2BI CACGAG 1 cut(s) 666
Bst4CI ACNGT 6 cut(s) 152, 232, 262, 412, 439, 700
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 179, 307, 366
BstDEI CTNAG 2 cut(s) 342, 498
BstDSI CCRYGG 1 cut(s) 423
BstEII GGTNACC 1 cut(s) 503
BstFNI CGCG 1 cut(s) 635
BstKTI GATC 4 cut(s) 12, 106, 124, 684
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 4 cut(s) 9, 103, 121, 681
BstMWI GCNNNNNNNGC 4 cut(s) 62, 169, 178, 602
BstNSI RCATGY 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 230
BstPI GGTNACC 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 68
BstUI CGCG 1 cut(s) 635
BstV1I GCAGC 3 cut(s) 289, 325, 348
BsuRI GGCC 5 cut(s) 45, 56, 309, 395, 695
BtgI CCRYGG 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 6 cut(s) 157, 170, 228, 408, 444, 549
Cac8I GCNNGC 3 cut(s) 179, 307, 366
Cfr10I RCCGGY 1 cut(s) 45
Csp6I GTAC 2 cut(s) 145, 330
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 6 cut(s) 127, 136, 158, 173, 691, 705
CviQI GTAC 2 cut(s) 145, 330
DdeI CTNAG 2 cut(s) 342, 498
DpnI GATC 4 cut(s) 11, 105, 123, 683
DpnII GATC 4 cut(s) 9, 103, 121, 681
EaeI YGGCCR 4 cut(s) 43, 54, 307, 693
Eco130I CCWWGG 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 382
Eco91I GGTNACC 1 cut(s) 503
EcoO65I GGTNACC 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 6 cut(s) 130, 139, 161, 176, 694, 708
FatI CATG 6 cut(s) 126, 135, 157, 172, 690, 704
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 303, 339, 362
Fsp4HI GCNGC 3 cut(s) 303, 339, 362
FspBI CTAG 1 cut(s) 327
GluI GCNGC 3 cut(s) 303, 339, 362
GsuI CTGGAG 2 cut(s) 307, 354
HaeIII GGCC 5 cut(s) 45, 56, 309, 395, 695
HapII CCGG 1 cut(s) 46
Hin1II CATG 6 cut(s) 130, 139, 161, 176, 694, 708
HincII GTYRAC 2 cut(s) 384, 430
HindII GTYRAC 2 cut(s) 384, 430
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 4 cut(s) 30, 494, 516, 669
HpaII CCGG 1 cut(s) 46
Hpy166II GTNNAC 4 cut(s) 272, 384, 430, 549
Hpy188I TCNGA 3 cut(s) 35, 499, 524
Hpy188III TCNNGA 3 cut(s) 13, 112, 666
Hpy8I GTNNAC 4 cut(s) 272, 384, 430, 549
HpyAV CCTTC 3 cut(s) 30, 406, 448
HpyCH4III ACNGT 6 cut(s) 152, 232, 262, 412, 439, 700
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 169, 178, 602
HpyF3I CTNAG 2 cut(s) 342, 498
Hsp92II CATG 6 cut(s) 130, 139, 161, 176, 694, 708
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 4 cut(s) 9, 103, 121, 681
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 3 cut(s) 289, 325, 348
LweI GCATC 1 cut(s) 577
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 4 cut(s) 503, 656, 686, 700
MalI GATC 4 cut(s) 11, 105, 123, 683
MboI GATC 4 cut(s) 9, 103, 121, 681
MboII GAAGA 3 cut(s) 19, 463, 503
MlsI TGGCCA 3 cut(s) 56, 309, 695
MluCI AATT 2 cut(s) 200, 600
MluNI TGGCCA 3 cut(s) 56, 309, 695
MlyI GAGTC 1 cut(s) 678
MnlI CCTC 6 cut(s) 208, 284, 337, 443, 493, 530
Mox20I TGGCCA 3 cut(s) 56, 309, 695
MscI TGGCCA 3 cut(s) 56, 309, 695
MseI TTAA 4 cut(s) 99, 141, 183, 474
Msp20I TGGCCA 3 cut(s) 56, 309, 695
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 1 cut(s) 46
MvnI CGCG 1 cut(s) 635
MwoI GCNNNNNNNGC 4 cut(s) 62, 169, 178, 602
NdeII GATC 4 cut(s) 9, 103, 121, 681
NlaIII CATG 6 cut(s) 130, 139, 161, 176, 694, 708
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 686
NspI RCATGY 1 cut(s) 139
PciI ACATGT 1 cut(s) 135
PfeI GAWTC 3 cut(s) 30, 494, 516
PkrI GCNGC 3 cut(s) 304, 340, 363
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
PscI ACATGT 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 230
PspEI GGTNACC 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 405
PstI CTGCAG 1 cut(s) 72
RsaI GTAC 2 cut(s) 146, 331
RsaNI GTAC 2 cut(s) 145, 330
SaqAI TTAA 4 cut(s) 99, 141, 183, 474
SatI GCNGC 3 cut(s) 303, 339, 362
Sau3AI GATC 4 cut(s) 9, 103, 121, 681
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 1 cut(s) 678
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 182, 446
SmoI CTYRAG 2 cut(s) 182, 446
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 2 cut(s) 200, 600
SspMI CTAG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 6 cut(s) 152, 232, 262, 412, 439, 700
TaqI TCGA 3 cut(s) 84, 585, 675
TasI AATT 2 cut(s) 200, 600
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 3 cut(s) 30, 494, 516
Tru1I TTAA 4 cut(s) 99, 141, 183, 474
Tru9I TTAA 4 cut(s) 99, 141, 183, 474
TscAI CASTG 6 cut(s) 157, 170, 235, 415, 444, 556
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 3 cut(s) 302, 338, 361
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 3 cut(s) 146, 293, 663
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 6 cut(s) 157, 170, 235, 415, 444, 556
Vha464I CTTAAG 1 cut(s) 182
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 2 cut(s) 200, 556
XspI CTAG 1 cut(s) 327
ZrmI AGTACT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.