Rroxscaffold_3G00264260

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000502
Physical Location & Seq
Forward (+)
57966573 .. 57972688
6116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264260.1

Sequence Viewer

Length: 1386 bp
ATGGGAGACTACACAGCCCCTCAAGGCTTTGCAGGGTATGCTTGCAAAGACCCTGCCAAGGTCACAGTAGACGATTTCGTCTACTCCGGCCTAAAAGTCCCCAGTAACACCACGAACATTAACAAATCTGGATTCACAGCTGCCGTTGCCCCTGTATTTCCTGCTCTCAACGGCCTAGGCGTTTCGGTGGCCCTAGCAACCCTGGAGGTTGATGGAGTTAGTCCGCTTCACAGCCACCGCGGAGCTACAGAAGTAATAGTCATCGTAGAAGGAAGTAACATAGTCGCCGGGTTCATTGCCTCGAGTAACAAAGTTTATACAAAGACTCTGAACAAGGGTGATGCTTTTGTTTTTCCACAAGGGTTGTATCACTTCTTTTGGAATAAGGGTCAAACACCTGCCAGTATATTTGTTAGCTTCAGTAGCGAAAACCCCGGCGTTCAGGTTCTGGAGTATGCACTGTTCCAAAGCGATTTCCCTACCGAAATCATAGCCAAGACCACTTTACTTGACGTTGCTCAGATTAAGAAACTTAAGGGTGTTTTTAATGGCATGTTCACAAAAGTTGATCGGAAATTTGAGGAGTCAGATTATCATGTGGACCAGGTCTACATGTTCAAGCACGACACTGTTCACGGTGCATGGAAGAATTGCGATGTGAAACTTAAGAATGCAAACCACGTTTACTTTGGTAACAAGGAAGTCACCATTTTTGCAATCAGCCGAGAAGACGAAATCCCTTGGTCCGGCCCAGGAGCCGAATATATCGTGGATGCCTCTGGTACTGCCACTGAAATCGAATTTGCTCAGGGCCATTTGAAGGTCATTCATGATAAATTTGGTATCATCGAGGGTCTGATGAGCACTATTCACTCAGTTACTGCTAGCCAAAGAGGTCTTGATGGAACATGTCCTAATGATTGGAGACCTGGAAAAGCTGCACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCCACTACTACCGGAGCTGCTAAGGCTGTTGGTAAAGTTCTACCTGACCTGGATGGTAAATTGACCGGAATGTCATTCCGTGTTCCTAGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGGCTAGAAAAGCCGGCTACGTATGAGGAAATAAAAGCTGCCATCAAGGAAGAGTCTGAGGGAAACCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTGGTCTCTACCGACTTTAAGCATGACAGCAGGTCAAGTATTTTTGATGCAAAGGCCGGAATTGCTTTGAACCATAACTTCCACAAGTTGGTCGCATGGTACGACAACGAGTGGGGATACAGCACTCGCATCGTTGACTTGATGACCTACATTGCGTCATTTGATTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

461

Amino Acids

50.31

Weight (kDa)

5.73

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 30 - 175 2.1e-30 Cupin
Cupin_2 PF07883 65 - 138 4.7e-09 Cupin domain
Gp_dh_N PF00044 202 - 264 3.6e-08 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 273 - 314 5.1e-10 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 316 - 438 4.2e-49 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 406
AasI GACNNNNNNGTC 2 cut(s) 77, 1063
Acc36I ACCTGC 2 cut(s) 406, 1233
AccB7I CCANNNNNTGG 1 cut(s) 1300
AccI GTMKAC 4 cut(s) 69, 81, 609, 1101
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 224, 238, 240
AcsI RAATTY 3 cut(s) 575, 800, 836
AcuI CTGAAG 3 cut(s) 403, 1202, 1224
AfaI GTAC 2 cut(s) 784, 1313
AfiI CCNNNNNNNGG 4 cut(s) 58, 746, 820, 1300
AflII CTTAAG 2 cut(s) 533, 665
AflIII ACRYGT 2 cut(s) 612, 908
AgsI TTSAA 3 cut(s) 619, 820, 1282
AhdI GACNNNNNGTC 1 cut(s) 1243
AjnI CCWGG 5 cut(s) 201, 603, 751, 928, 1041
AjuI GAANNNNNNNTTGG 2 cut(s) 1175, 1207
AluBI AGCT 7 cut(s) 140, 245, 417, 938, 974, 1010, 1151
AluI AGCT 7 cut(s) 140, 245, 417, 938, 974, 1010, 1151
Alw21I GWGCWC 1 cut(s) 866
Alw26I GTCTC 2 cut(s) 919, 1222
AlwNI CAGNNNCTG 2 cut(s) 448, 881
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 6 cut(s) 88, 172, 189, 748, 811, 1266
ApeKI GCWGC 5 cut(s) 140, 938, 974, 1010, 1151
ApoI RAATTY 3 cut(s) 575, 800, 836
AspA2I CCTAGG 1 cut(s) 175
AspS9I GGNCC 5 cut(s) 190, 601, 744, 749, 811
AsuC2I CCSGG 2 cut(s) 289, 435
AsuHPI GGTGA 2 cut(s) 350, 697
AsuNHI GCTAGC 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 2 cut(s) 601, 744
AvrII CCTAGG 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 1 cut(s) 866
BbvI GCAGC 5 cut(s) 127, 925, 961, 997, 1138
BccI CCATC 4 cut(s) 206, 896, 1040, 1163
BceAI ACGGC 2 cut(s) 128, 187
BcgI CGANNNNNNTGC 2 cut(s) 1324, 1358
BciT130I CCWGG 5 cut(s) 203, 605, 753, 930, 1043
BciVI GTATCC 1 cut(s) 1322
BcnI CCSGG 2 cut(s) 289, 435
BcoDI GTCTC 2 cut(s) 919, 1222
BfaI CTAG 5 cut(s) 176, 194, 885, 1080, 1118
BfmI CTRYAG 1 cut(s) 246
BfrI CTTAAG 2 cut(s) 533, 665
BfuAI ACCTGC 2 cut(s) 406, 1233
BfuI GTATCC 1 cut(s) 1322
BisI GCNGC 5 cut(s) 141, 939, 975, 1011, 1152
BlnI CCTAGG 1 cut(s) 175
BlsI GCNGC 5 cut(s) 142, 940, 976, 1012, 1153
Bme1390I CCNGG 7 cut(s) 203, 289, 435, 605, 753, 930, 1043
Bme18I GGWCC 2 cut(s) 601, 744
BmeRI GACNNNNNGTC 1 cut(s) 1243
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 5 cut(s) 190, 601, 744, 749, 811
BmiI GGNNCC 1 cut(s) 757
BmrFI CCNGG 7 cut(s) 203, 289, 435, 605, 753, 930, 1043
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 4 cut(s) 331, 763, 1249, 1350
BmtI GCTAGC 1 cut(s) 888
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 735
BpmI CTGGAG 2 cut(s) 224, 470
Bpu10I CCTNAGC 2 cut(s) 807, 1014
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 2 cut(s) 289, 435
BsaAI YACGTR 1 cut(s) 1134
BsaI GGTCTC 2 cut(s) 919, 1222
BsaJI CCNNGG 7 cut(s) 57, 175, 201, 238, 433, 740, 751
BsaWI WCCGGW 2 cut(s) 1004, 1058
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 746, 820, 1300
Bse118I RCCGGY 1 cut(s) 1126
Bse1I ACTGG 2 cut(s) 102, 402
Bse3DI GCAATG 2 cut(s) 294, 1362
BseBI CCWGG 5 cut(s) 203, 605, 753, 930, 1043
BseDI CCNNGG 7 cut(s) 57, 175, 201, 238, 433, 740, 751
BseGI GGATG 2 cut(s) 778, 1051
BseLI CCNNNNNNNGG 4 cut(s) 58, 746, 820, 1300
BseMI GCAATG 2 cut(s) 294, 1362
BseMII CTCAG 4 cut(s) 533, 821, 888, 1161
BseNI ACTGG 2 cut(s) 102, 402
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 5 cut(s) 127, 925, 961, 997, 1138
BsgI GTGCAG 1 cut(s) 924
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 6 cut(s) 90, 174, 191, 750, 813, 1268
BsiHKAI GWGCWC 1 cut(s) 866
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 8 cut(s) 87, 288, 435, 747, 1005, 1059, 1127, 1269
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 4 cut(s) 58, 746, 820, 1300
BsmAI GTCTC 2 cut(s) 919, 1222
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 6 cut(s) 90, 174, 191, 750, 813, 1268
Bso31I GGTCTC 2 cut(s) 919, 1222
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 866
Bsp143I GATC 1 cut(s) 568
BspACI CCGC 3 cut(s) 224, 238, 240
BspANI GGCC 6 cut(s) 90, 174, 191, 750, 813, 1268
BspCNI CTCAG 4 cut(s) 532, 820, 887, 1162
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 1 cut(s) 757
BspMI ACCTGC 2 cut(s) 406, 1233
BspOI GCTAGC 1 cut(s) 888
BspQI GCTCTTC 1 cut(s) 964
BspTI CTTAAG 2 cut(s) 533, 665
BspTNI GGTCTC 2 cut(s) 919, 1222
BsrDI GCAATG 2 cut(s) 294, 1362
BsrFI RCCGGY 1 cut(s) 1126
BsrI ACTGG 2 cut(s) 102, 402
BssAI RCCGGY 1 cut(s) 1126
BssECI CCNNGG 7 cut(s) 57, 175, 201, 238, 433, 740, 751
BssMI GATC 1 cut(s) 568
BssT1I CCWWGG 3 cut(s) 57, 175, 740
Bst2UI CCWGG 5 cut(s) 203, 605, 753, 930, 1043
Bst4CI ACNGT 5 cut(s) 67, 462, 631, 638, 1111
Bst6I CTCTTC 2 cut(s) 964, 1158
BstAFI CTTAAG 2 cut(s) 533, 665
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 1134
BstC8I GCNNGC 3 cut(s) 43, 886, 1128
BstDEI CTNAG 5 cut(s) 519, 807, 874, 1014, 1170
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 778, 1051
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 1 cut(s) 571
BstMAI GTCTC 2 cut(s) 919, 1222
BstMBI GATC 1 cut(s) 568
BstMWI GCNNNNNNNGC 6 cut(s) 38, 146, 423, 1016, 1123, 1274
BstNI CCWGG 5 cut(s) 203, 605, 753, 930, 1043
BstNSI RCATGY 3 cut(s) 556, 616, 912
BstSCI CCNGG 7 cut(s) 201, 287, 433, 603, 751, 928, 1041
BstSFI CTRYAG 1 cut(s) 246
BstSNI TACGTA 1 cut(s) 1134
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 5 cut(s) 127, 925, 961, 997, 1138
BstV2I GAAGAC 1 cut(s) 735
BsuI GTATCC 1 cut(s) 1322
BsuRI GGCC 6 cut(s) 90, 174, 191, 750, 813, 1268
BtgI CCRYGG 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 2 cut(s) 778, 1051
BtsIMutI CAGTG 5 cut(s) 458, 627, 789, 1116, 1200
BveI ACCTGC 2 cut(s) 406, 1233
Cac8I GCNNGC 3 cut(s) 43, 886, 1128
CaiI CAGNNNCTG 2 cut(s) 448, 881
CciI TCATGA 1 cut(s) 829
Cfr10I RCCGGY 1 cut(s) 1126
Cfr13I GGNCC 5 cut(s) 190, 601, 744, 749, 811
Cfr42I CCGCGG 1 cut(s) 241
CseI GACGC 1 cut(s) 1356
CsiI ACCWGGT 1 cut(s) 603
Csp6I GTAC 2 cut(s) 783, 1312
CspCI CAANNNNNGTGG 4 cut(s) 345, 380, 490, 525
CviAII CATG 8 cut(s) 553, 596, 613, 642, 830, 909, 1235, 1308
CviQI GTAC 2 cut(s) 783, 1312
DdeI CTNAG 5 cut(s) 519, 807, 874, 1014, 1170
DpnI GATC 1 cut(s) 570
DpnII GATC 1 cut(s) 568
DrdI GACNNNNNNGTC 2 cut(s) 77, 1063
DriI GACNNNNNGTC 1 cut(s) 1243
DseDI GACNNNNNNGTC 2 cut(s) 77, 1063
Eam1104I CTCTTC 2 cut(s) 964, 1158
Eam1105I GACNNNNNGTC 1 cut(s) 1243
EarI CTCTTC 2 cut(s) 964, 1158
Eco105I TACGTA 1 cut(s) 1134
Eco130I CCWWGG 3 cut(s) 57, 175, 740
Eco31I GGTCTC 2 cut(s) 919, 1222
Eco47I GGWCC 2 cut(s) 601, 744
Eco57I CTGAAG 3 cut(s) 403, 1202, 1224
Eco88I CYCGRG 1 cut(s) 301
EcoRII CCWGG 5 cut(s) 201, 603, 751, 928, 1041
EcoT14I CCWWGG 3 cut(s) 57, 175, 740
ErhI CCWWGG 3 cut(s) 57, 175, 740
FaeI CATG 8 cut(s) 556, 599, 616, 645, 833, 912, 1238, 1311
FalI AAGNNNNNCTT 4 cut(s) 961, 993, 1175, 1207
FaqI GGGAC 1 cut(s) 83
FatI CATG 8 cut(s) 552, 595, 612, 641, 829, 908, 1234, 1307
FblI GTMKAC 4 cut(s) 69, 81, 609, 1101
Fnu4HI GCNGC 5 cut(s) 141, 939, 975, 1011, 1152
FokI GGATG 2 cut(s) 785, 1058
Fsp4HI GCNGC 5 cut(s) 141, 939, 975, 1011, 1152
FspBI CTAG 5 cut(s) 176, 194, 885, 1080, 1118
GluI GCNGC 5 cut(s) 141, 939, 975, 1011, 1152
GsuI CTGGAG 2 cut(s) 224, 470
HaeIII GGCC 6 cut(s) 90, 174, 191, 750, 813, 1268
HapII CCGG 8 cut(s) 87, 288, 435, 747, 1005, 1059, 1127, 1269
HgaI GACGC 1 cut(s) 1356
Hin1II CATG 8 cut(s) 556, 599, 616, 645, 833, 912, 1238, 1311
HincII GTYRAC 1 cut(s) 1348
HindII GTYRAC 1 cut(s) 1348
HinfI GANTC 6 cut(s) 132, 325, 584, 1166, 1188, 1376
HpaII CCGG 8 cut(s) 87, 288, 435, 747, 1005, 1059, 1127, 1269
HphI GGTGA 2 cut(s) 350, 697
Hpy166II GTNNAC 9 cut(s) 70, 82, 558, 601, 610, 634, 685, 1102, 1348
Hpy188I TCNGA 6 cut(s) 330, 522, 573, 589, 858, 1171
Hpy188III TCNNGA 5 cut(s) 129, 449, 830, 899, 1085
Hpy8I GTNNAC 9 cut(s) 70, 82, 558, 601, 610, 634, 685, 1102, 1348
HpyAV CCTTC 3 cut(s) 263, 814, 1177
HpyCH4III ACNGT 5 cut(s) 67, 462, 631, 638, 1111
HpyCH4IV ACGT 3 cut(s) 513, 681, 1133
HpyCH4V TGCA 8 cut(s) 32, 45, 458, 641, 674, 716, 941, 1262
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 146, 423, 1016, 1123, 1274
HpyF3I CTNAG 5 cut(s) 519, 807, 874, 1014, 1170
HpySE526I ACGT 3 cut(s) 513, 681, 1133
Hsp92II CATG 8 cut(s) 556, 599, 616, 645, 833, 912, 1238, 1311
KroI GCCGGC 1 cut(s) 1126
KroNI GCCGGC 1 cut(s) 1128
KspI CCGCGG 1 cut(s) 241
Kzo9I GATC 1 cut(s) 568
LguI GCTCTTC 1 cut(s) 964
LmnI GCTCC 3 cut(s) 242, 755, 1007
Lsp1109I GCAGC 5 cut(s) 127, 925, 961, 997, 1138
LweI GCATC 4 cut(s) 331, 763, 1249, 1350
MabI ACCWGGT 1 cut(s) 603
MaeI CTAG 5 cut(s) 176, 194, 885, 1080, 1118
MaeII ACGT 3 cut(s) 513, 681, 1133
MaeIII GTNAC 8 cut(s) 61, 104, 275, 305, 692, 703, 877, 1196
MalI GATC 1 cut(s) 570
MboI GATC 1 cut(s) 568
MboII GAAGA 5 cut(s) 658, 740, 981, 1175, 1217
MhlI GDGCHC 1 cut(s) 866
MluCI AATT 7 cut(s) 575, 649, 800, 836, 963, 1052, 1272
MlyI GAGTC 3 cut(s) 319, 593, 1175
MroNI GCCGGC 1 cut(s) 1126
MseI TTAA 6 cut(s) 120, 525, 534, 546, 666, 1230
MspA1I CMGCKG 2 cut(s) 140, 240
MspCI CTTAAG 2 cut(s) 533, 665
MspI CCGG 8 cut(s) 87, 288, 435, 747, 1005, 1059, 1127, 1269
MspR9I CCNGG 7 cut(s) 203, 289, 435, 605, 753, 930, 1043
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 5 cut(s) 203, 605, 753, 930, 1043
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 6 cut(s) 38, 146, 423, 1016, 1123, 1274
NaeI GCCGGC 1 cut(s) 1128
NciI CCSGG 2 cut(s) 289, 435
NdeII GATC 1 cut(s) 568
NgoMIV GCCGGC 1 cut(s) 1126
NheI GCTAGC 1 cut(s) 884
NlaIII CATG 8 cut(s) 556, 599, 616, 645, 833, 912, 1238, 1311
NlaIV GGNNCC 1 cut(s) 757
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 2 cut(s) 61, 703
NspI RCATGY 3 cut(s) 556, 616, 912
PaeR7I CTCGAG 1 cut(s) 301
PagI TCATGA 1 cut(s) 829
PaqCI CACCTGC 1 cut(s) 406
PciI ACATGT 2 cut(s) 612, 908
PciSI GCTCTTC 1 cut(s) 964
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 1311
PctI GAATGC 1 cut(s) 676
PdiI GCCGGC 1 cut(s) 1128
PfeI GAWTC 3 cut(s) 132, 1188, 1376
PflFI GACNNNGTC 1 cut(s) 605
PflMI CCANNNNNTGG 1 cut(s) 1300
PkrI GCNGC 5 cut(s) 142, 940, 976, 1012, 1153
PleI GAGTC 3 cut(s) 319, 592, 1174
PpsI GAGTC 3 cut(s) 319, 592, 1174
Ppu21I YACGTR 1 cut(s) 1134
PscI ACATGT 2 cut(s) 612, 908
Psp6I CCWGG 5 cut(s) 201, 603, 751, 928, 1041
PspGI CCWGG 5 cut(s) 201, 603, 751, 928, 1041
PspN4I GGNNCC 1 cut(s) 757
PspPI GGNCC 5 cut(s) 190, 601, 744, 749, 811
PspXI VCTCGAGB 1 cut(s) 301
PsrI GAACNNNNNNTAC 2 cut(s) 446, 478
PstNI CAGNNNCTG 2 cut(s) 448, 881
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 784, 1313
RsaNI GTAC 2 cut(s) 783, 1312
SacII CCGCGG 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 964
SaqAI TTAA 6 cut(s) 120, 525, 534, 546, 666, 1230
SatI GCNGC 5 cut(s) 141, 939, 975, 1011, 1152
Sau3AI GATC 1 cut(s) 568
Sau96I GGNCC 5 cut(s) 190, 601, 744, 749, 811
SchI GAGTC 3 cut(s) 319, 593, 1175
ScrFI CCNGG 7 cut(s) 203, 289, 435, 605, 753, 930, 1043
SduI GDGCHC 1 cut(s) 866
SexAI ACCWGGT 1 cut(s) 603
SfaNI GCATC 4 cut(s) 331, 763, 1249, 1350
SfcI CTRYAG 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 301
Sfr303I CCGCGG 1 cut(s) 241
SgrBI CCGCGG 1 cut(s) 241
SinI GGWCC 2 cut(s) 601, 744
SlaI CTCGAG 1 cut(s) 301
SmlI CTYRAG 4 cut(s) 21, 301, 533, 665
SmoI CTYRAG 4 cut(s) 21, 301, 533, 665
SnaBI TACGTA 1 cut(s) 1134
Sse9I AATT 7 cut(s) 575, 649, 800, 836, 963, 1052, 1272
SsiI CCGC 3 cut(s) 224, 238, 240
SspMI CTAG 5 cut(s) 176, 194, 885, 1080, 1118
StyD4I CCNGG 7 cut(s) 201, 287, 433, 603, 751, 928, 1041
StyI CCWWGG 3 cut(s) 57, 175, 740
TaaI ACNGT 5 cut(s) 67, 462, 631, 638, 1111
TaiI ACGT 3 cut(s) 516, 684, 1136
TaqI TCGA 3 cut(s) 302, 798, 849
TasI AATT 7 cut(s) 575, 649, 800, 836, 963, 1052, 1272
TfiI GAWTC 3 cut(s) 132, 1188, 1376
Tru1I TTAA 6 cut(s) 120, 525, 534, 546, 666, 1230
Tru9I TTAA 6 cut(s) 120, 525, 534, 546, 666, 1230
TscAI CASTG 5 cut(s) 465, 634, 796, 1116, 1207
TseFI GTSAC 2 cut(s) 61, 703
TseI GCWGC 5 cut(s) 140, 938, 974, 1010, 1151
Tsp45I GTSAC 2 cut(s) 61, 703
TspDTI ATGAA 2 cut(s) 283, 818
TspGWI ACGGA 1 cut(s) 1061
TspRI CASTG 5 cut(s) 465, 634, 796, 1116, 1207
Tth111I GACNNNGTC 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 1300
Vha464I CTTAAG 2 cut(s) 533, 665
VpaK11BI GGWCC 2 cut(s) 601, 744
XapI RAATTY 3 cut(s) 575, 800, 836
XceI RCATGY 3 cut(s) 556, 616, 912
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 301
XmaJI CCTAGG 1 cut(s) 175
XmiI GTMKAC 4 cut(s) 69, 81, 609, 1101
XspI CTAG 5 cut(s) 176, 194, 885, 1080, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.