Rh7BG116700

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000502
Physical Location & Seq
Reverse (-)
8715721 .. 8719042
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG116700.1

Sequence Viewer

Length: 942 bp
ATGGGGAAAATCAAACTCGGAATCAATGGATTTGGAAGAATTGGAAGATTGGTCACAAGAGTGGCTTTGCAAAGAGACGATATTGATCTTGTTTGCATTAACGACCCCCACGTCACGGCCGACTACATTGTCTACATGTTCAAGCACGACACTGTTCACGGTGCATGGAAGAATTGCGATGTGAAACTTAAGAATGCAAACCACGTTTACTTTGGTAACAAGGAAGTCACCATTTTTGCAATCAGCCGAGAAGACGAAATCCCTTGGTCCGGCCCCGGAGCCGAATACATCGTGGATGCCTCTGGTACTGCCACCGAAATCCAATTTGCTCAGGGCCATTTGAAGGGCGGAGCAAAGAAGGTTATTGTCACTTGCCCGTGTGATGGTGCTCCTACGTTTGTTGTGGGTGTCAATGAGAAGGAATACAAGCCGGAGCTTAATGTTATTTCCGGTGCTAGTTGCACCACCAACTGCCTTGCCCCCCTTGCAAAGGTCATTCATGATAAATTTGGTATCATCGAGGGTCTGATGAGCACTGTTCACTCAGTTACTGCTAGCCAAAAAGGTGTTGATGGAACATGTCCTAATGATTGGAGACCTGGAAAAGCTGCACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCCACTACTACCGGAGCTGCTAAGGCTGTTGGTAAAGTTCTACCTGACCTGGATGGTAAATTGACCGGAATGTCATTCCGTGTTCCTAGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGGCTAGAAAAGCCGGCTACGTATGAGGAAATAAAAGCTGCCATCAAGGAAGAGTCCGAGGGAAACCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTGGTCTCTACCGACTTTGAGCGTGACAGCAGGTACACAAATGCATATATATGCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

313

Amino Acids

33.96

Weight (kDa)

6.19

Isoelectric Point (pI)

20.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 105 6.8e-26 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 159 - 204 6.6e-13 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C PF02800 206 - 307 1.8e-40 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 110, 128, 733
Acc36I ACCTGC 1 cut(s) 903
AccI GTMKAC 2 cut(s) 132, 771
AciI CCGC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 2 cut(s) 872, 894
AfaI GTAC 2 cut(s) 307, 917
AfiI CCNNNNNNNGG 5 cut(s) 115, 269, 343, 383, 490
AflII CTTAAG 1 cut(s) 188
AflIII ACRYGT 2 cut(s) 135, 578
AgsI TTSAA 2 cut(s) 142, 343
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 2 cut(s) 598, 711
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 5 cut(s) 436, 608, 644, 680, 821
AluI AGCT 5 cut(s) 436, 608, 644, 680, 821
Alw21I GWGCWC 2 cut(s) 391, 536
Alw26I GTCTC 3 cut(s) 69, 589, 892
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 3 cut(s) 117, 271, 334
ApeKI GCWGC 4 cut(s) 608, 644, 680, 821
ApoI RAATTY 1 cut(s) 506
AspS9I GGNCC 3 cut(s) 267, 272, 334
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 391, 536
BbvI GCAGC 4 cut(s) 595, 631, 667, 808
BccI CCATC 4 cut(s) 377, 566, 710, 833
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 2 cut(s) 600, 713
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 3 cut(s) 69, 589, 892
BfaI CTAG 4 cut(s) 456, 555, 750, 788
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 903
BisI GCNGC 4 cut(s) 609, 645, 681, 822
BlsI GCNGC 4 cut(s) 610, 646, 682, 823
Bme1390I CCNGG 3 cut(s) 276, 600, 713
Bme18I GGWCC 1 cut(s) 267
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 3 cut(s) 267, 272, 334
BmiI GGNNCC 2 cut(s) 274, 280
BmrFI CCNGG 3 cut(s) 276, 600, 713
BmsI GCATC 1 cut(s) 286
BmtI GCTAGC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 258
Bpu10I CCTNAGC 2 cut(s) 330, 684
BpuMI CCSGG 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 804
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 2 cut(s) 589, 892
BsaJI CCNNGG 3 cut(s) 263, 274, 840
BsaWI WCCGGW 3 cut(s) 449, 674, 728
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 269, 343, 383, 490
Bse118I RCCGGY 1 cut(s) 796
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 2 cut(s) 600, 713
BseDI CCNNGG 3 cut(s) 263, 274, 840
BseGI GGATG 2 cut(s) 301, 721
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 5 cut(s) 115, 269, 343, 383, 490
BseMII CTCAG 2 cut(s) 344, 558
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 4 cut(s) 595, 631, 667, 808
BsgI GTGCAG 1 cut(s) 594
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 119, 273, 336
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 391, 536
BsiSI CCGG 7 cut(s) 270, 276, 431, 450, 675, 729, 797
BslI CCNNNNNNNGG 5 cut(s) 115, 269, 343, 383, 490
BsmAI GTCTC 3 cut(s) 69, 589, 892
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 3 cut(s) 119, 273, 336
Bso31I GGTCTC 2 cut(s) 589, 892
Bsp1286I GDGCHC 2 cut(s) 391, 536
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 348
BspANI GGCC 3 cut(s) 119, 273, 336
BspCNI CTCAG 2 cut(s) 343, 557
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 274, 280
BspMI ACCTGC 1 cut(s) 903
BspOI GCTAGC 1 cut(s) 558
BspQI GCTCTTC 1 cut(s) 634
BspTI CTTAAG 1 cut(s) 188
BspTNI GGTCTC 2 cut(s) 589, 892
BsrFI RCCGGY 1 cut(s) 796
BssAI RCCGGY 1 cut(s) 796
BssECI CCNNGG 3 cut(s) 263, 274, 840
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 600, 713
Bst4CI ACNGT 4 cut(s) 154, 161, 538, 781
Bst6I CTCTTC 2 cut(s) 634, 828
BstAFI CTTAAG 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 804
BstC8I GCNNGC 2 cut(s) 556, 798
BstDEI CTNAG 3 cut(s) 330, 544, 684
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 301, 721
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 3 cut(s) 69, 589, 892
BstMBI GATC 1 cut(s) 85
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 3 cut(s) 485, 686, 793
BstNI CCWGG 2 cut(s) 600, 713
BstNSI RCATGY 2 cut(s) 139, 582
BstSCI CCNGG 3 cut(s) 274, 598, 711
BstSNI TACGTA 1 cut(s) 804
BstV1I GCAGC 4 cut(s) 595, 631, 667, 808
BstV2I GAAGAC 1 cut(s) 258
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 3 cut(s) 119, 273, 336
BtgZI GCGATG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 301, 721
BtsIMutI CAGTG 4 cut(s) 150, 534, 786, 870
BveI ACCTGC 1 cut(s) 903
Cac8I GCNNGC 2 cut(s) 556, 798
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 796
Cfr13I GGNCC 3 cut(s) 267, 272, 334
Csp6I GTAC 2 cut(s) 306, 916
CviAII CATG 4 cut(s) 136, 165, 500, 579
CviQI GTAC 2 cut(s) 306, 916
DdeI CTNAG 3 cut(s) 330, 544, 684
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DrdI GACNNNNNNGTC 3 cut(s) 110, 128, 733
DseDI GACNNNNNNGTC 3 cut(s) 110, 128, 733
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 634, 828
EarI CTCTTC 2 cut(s) 634, 828
EciI GGCGGA 1 cut(s) 363
EclXI CGGCCG 1 cut(s) 117
Eco105I TACGTA 1 cut(s) 804
Eco130I CCWWGG 1 cut(s) 263
Eco31I GGTCTC 2 cut(s) 589, 892
Eco47I GGWCC 1 cut(s) 267
Eco52I CGGCCG 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 872, 894
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 598, 711
EcoT14I CCWWGG 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 928
ErhI CCWWGG 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 139, 168, 503, 582
FalI AAGNNNNNCTT 6 cut(s) 49, 81, 631, 663, 845, 877
FatI CATG 4 cut(s) 135, 164, 499, 578
FblI GTMKAC 2 cut(s) 132, 771
Fnu4HI GCNGC 4 cut(s) 609, 645, 681, 822
FokI GGATG 2 cut(s) 308, 728
Fsp4HI GCNGC 4 cut(s) 609, 645, 681, 822
FspBI CTAG 4 cut(s) 456, 555, 750, 788
GluI GCNGC 4 cut(s) 609, 645, 681, 822
HaeIII GGCC 3 cut(s) 119, 273, 336
HapII CCGG 7 cut(s) 270, 276, 431, 450, 675, 729, 797
Hin1II CATG 4 cut(s) 139, 168, 503, 582
HinfI GANTC 3 cut(s) 21, 836, 858
HpaII CCGG 7 cut(s) 270, 276, 431, 450, 675, 729, 797
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 6 cut(s) 133, 157, 208, 541, 772, 918
Hpy188I TCNGA 3 cut(s) 20, 528, 841
Hpy188III TCNNGA 2 cut(s) 500, 755
Hpy8I GTNNAC 6 cut(s) 133, 157, 208, 541, 772, 918
HpyAV CCTTC 4 cut(s) 337, 352, 412, 847
HpyCH4III ACNGT 4 cut(s) 154, 161, 538, 781
HpyCH4IV ACGT 4 cut(s) 111, 204, 395, 803
HpyCH4V TGCA 9 cut(s) 70, 96, 164, 197, 239, 462, 488, 611, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 686, 793
HpyF3I CTNAG 3 cut(s) 330, 544, 684
HpySE526I ACGT 4 cut(s) 111, 204, 395, 803
Hsp92II CATG 4 cut(s) 139, 168, 503, 582
KroI GCCGGC 1 cut(s) 796
KroNI GCCGGC 1 cut(s) 798
Kzo9I GATC 1 cut(s) 85
LguI GCTCTTC 1 cut(s) 634
LmnI GCTCC 5 cut(s) 278, 350, 394, 433, 677
Lsp1109I GCAGC 4 cut(s) 595, 631, 667, 808
LweI GCATC 1 cut(s) 286
MaeI CTAG 4 cut(s) 456, 555, 750, 788
MaeII ACGT 4 cut(s) 111, 204, 395, 803
MaeIII GTNAC 8 cut(s) 52, 112, 215, 226, 367, 547, 866, 905
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 7 cut(s) 48, 57, 181, 263, 651, 845, 887
MhlI GDGCHC 2 cut(s) 391, 536
MluCI AATT 6 cut(s) 39, 172, 323, 506, 633, 722
MlyI GAGTC 1 cut(s) 845
MnlI CCTC 5 cut(s) 310, 514, 777, 802, 835
Mph1103I ATGCAT 1 cut(s) 928
MroNI GCCGGC 1 cut(s) 796
MseI TTAA 3 cut(s) 99, 189, 438
MslI CAYNNNNRTG 2 cut(s) 59, 931
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 7 cut(s) 270, 276, 431, 450, 675, 729, 797
MspR9I CCNGG 3 cut(s) 276, 600, 713
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 600, 713
MwoI GCNNNNNNNGC 3 cut(s) 485, 686, 793
NaeI GCCGGC 1 cut(s) 798
NciI CCSGG 1 cut(s) 276
NdeII GATC 1 cut(s) 85
NgoMIV GCCGGC 1 cut(s) 796
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 4 cut(s) 139, 168, 503, 582
NlaIV GGNNCC 2 cut(s) 274, 280
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 5 cut(s) 52, 112, 226, 367, 905
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 2 cut(s) 139, 582
OliI CACNNNNGTG 1 cut(s) 59
PagI TCATGA 1 cut(s) 499
PciI ACATGT 2 cut(s) 135, 578
PciSI GCTCTTC 1 cut(s) 634
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 117
PctI GAATGC 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 798
PfeI GAWTC 2 cut(s) 21, 858
PkrI GCNGC 4 cut(s) 610, 646, 682, 823
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
Ppu21I YACGTR 1 cut(s) 804
PscI ACATGT 2 cut(s) 135, 578
Psp6I CCWGG 2 cut(s) 598, 711
PspGI CCWGG 2 cut(s) 598, 711
PspN4I GGNNCC 2 cut(s) 274, 280
PspPI GGNCC 3 cut(s) 267, 272, 334
PstNI CAGNNNCTG 1 cut(s) 551
RsaI GTAC 2 cut(s) 307, 917
RsaNI GTAC 2 cut(s) 306, 916
RseI CAYNNNNRTG 2 cut(s) 59, 931
SapI GCTCTTC 1 cut(s) 634
SaqAI TTAA 3 cut(s) 99, 189, 438
SatI GCNGC 4 cut(s) 609, 645, 681, 822
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 3 cut(s) 267, 272, 334
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 3 cut(s) 276, 600, 713
SduI GDGCHC 2 cut(s) 391, 536
SfaNI GCATC 1 cut(s) 286
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 59, 931
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SnaBI TACGTA 1 cut(s) 804
Sse9I AATT 6 cut(s) 39, 172, 323, 506, 633, 722
SsiI CCGC 1 cut(s) 348
SspMI CTAG 4 cut(s) 456, 555, 750, 788
StyD4I CCNGG 3 cut(s) 274, 598, 711
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 4 cut(s) 154, 161, 538, 781
TaiI ACGT 4 cut(s) 114, 207, 398, 806
TaqI TCGA 1 cut(s) 519
TasI AATT 6 cut(s) 39, 172, 323, 506, 633, 722
TfiI GAWTC 2 cut(s) 21, 858
Tru1I TTAA 3 cut(s) 99, 189, 438
Tru9I TTAA 3 cut(s) 99, 189, 438
TscAI CASTG 4 cut(s) 157, 541, 786, 877
TseFI GTSAC 5 cut(s) 52, 112, 226, 367, 905
TseI GCWGC 4 cut(s) 608, 644, 680, 821
Tsp45I GTSAC 5 cut(s) 52, 112, 226, 367, 905
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 4 cut(s) 157, 541, 786, 877
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 506
XceI RCATGY 2 cut(s) 139, 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 2 cut(s) 132, 771
XspI CTAG 4 cut(s) 456, 555, 750, 788
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.